Customizing GPT for natural language dialogue interface in database access

Authors: Jin-Dong Kim, Kousaku Okubo

Source: Genomics & Informatics, Vol 22, Iss 1, Pp 1-8 (2024)

Subject Terms: Natural language dialogue interface, Large language models, ChatGPT, GPTS, Anatomy, Database, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2234-0742

Access URL: https://doaj.org/article/e6672656c7304fee89addc84e2f7ac4f

Isolation of Pure Human Mucosal Epithelium for RNA Analysis

Authors: Tadashi Ohnishi, Kousaku Okubo

Source: BioTechniques, Vol 27, Iss 5, Pp 978-986 (1999)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0736-6205; https://doaj.org/toc/1940-9818

Access URL: https://doaj.org/article/434389682fc2414cb098d2413dbc79e9

On theoretical models of gene expression evolution with random genetic drift and natural selection.

Authors: Osamu Ogasawara, Kousaku Okubo

Source: PLoS ONE, Vol 4, Iss 11, p e7943 (2009)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2776274?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/d46631bcc1c54d6c82fbd39f41406c62

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors: Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Kanako O Koyanagi, Roberto A Barrero, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry-Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Libin Jia, Mitsuteru Nakao, Michael A Thomas, Nicola Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, Boris Lenhard, Eric Eveno, Yoshiyuki Suzuki, Chisato Yamasaki, Jun-ichi Takeda, Craig Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, Matthew Bellgard, Maria de Fatima Bonaldo, Hidemasa Bono, Susan K Bromberg, Anthony J Brookes, Elspeth Bruford, Piero Carninci, Claude Chelala, Christine Couillault, Sandro J de Souza, Marie-Anne Debily, Marie-Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, Gopal R Gopinath, Esther Graudens, Yoonsoo Hahn, Michael Han, Ze-Guang Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makalowska, Takashi Makino, Shuhei Mano, Regine Mariage-Samson, Jun Mashima, Hideo Matsuda, Hans-Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier-Tonneau, Annemarie Poustka, Shuang-Xi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen Sherry, Rie Shiba, Nobuyoshi Shimizu, Mary Shimoyama, Andrew J Simpson, Bento Soares, Charles Steward, Makiko Suwa, Mami Suzuki, Aiko Takahashi, Gen Tamiya, Hiroshi Tanaka, Todd Taylor, Joseph D Terwilliger, Per Unneberg, Vamsi Veeramachaneni, Shinya Watanabe, Laurens Wilming, Norikazu Yasuda, Hyang-Sook Yoo, Marvin Stodolsky, Wojciech Makalowski, Mitiko Go, Kenta Nakai, Toshihisa Takagi, Minoru Kanehisa, Yoshiyuki Sakaki, John Quackenbush, Yasushi Okazaki, Yoshihide Hayashizaki, Winston Hide, Ranajit Chakraborty, Ken Nishikawa, Hideaki Sugawara, Yoshio Tateno, Zhu Chen, Michio Oishi, Peter Tonellato, Rolf Apweiler, Kousaku Okubo, Lukas Wagner, Stefan Wiemann, Robert L Strausberg, Takao Isogai, Charles Auffray, Nobuo Nomura, Takashi Gojobori, Sumio Sugano

Source: PLoS Biology, Vol 2, Iss 6, p e162 (2004)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/06eb24ad78484cfc8526622555aa94d3

DNA Data Bank of Japan.

Authors: Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Toshiaki Katayama, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi

Source: Nucleic Acids Research; 1/4/2017, Vol. 45 Issue D1, pD25-D31, 7p

DNA data bank of Japan (DDBJ) progress report.

Authors: Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi

Source: Nucleic Acids Research; 1/4/2016, Vol. 44 Issue 1, pD51-D57, 7p

DDBJ new system and service refactoring.

Authors: Osamu Ogasawara, Jun Mashima, Yuichi Kodama, Eli Kaminuma, Yasukazu Nakamura, Kousaku Okubo, Toshihisa Takagi

Source: Nucleic Acids Research; 2013 Database Issue Suppliment, Vol. 41, pD25-D29, 5p, 1 Color Photograph, 1 Chart

STATISTICAL ANALYSIS OF HUMAN DNA SEQUENCES IN THE VICINITY OF POLY(A) SIGNAL.

Authors: Tetsushi Yada, Masato Ishikawa, Yasushi Totoki, Kousaku Okubo

Source: Bioinformatics & Genome Research - Proceedings of the Third International Conference; 1995, p499-509, 11p

Subject Terms: NUCLEOTIDE sequencing, HUMAN DNA, NUCLEOTIDE sequence, DNA structure, COMPUTATIONAL biology

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Authors: Eli Kaminuma, Jun Mashima, Yuichi Kodama, Takashi Gojobori, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura

Source: Nucleic Acids Research; 2010 Database Issue Suppliment, Vol. 38, pD33-D38, 6p, 2 Color Photographs, 2 Diagrams, 1 Chart