NFDI4Microbiota – national research data infrastructure for microbiota research

Authors: Konrad U. Förstner, Anke Becker, Jochen Blom, Peer Bork, Thomas Clavel, Marius Dieckmann, Alexander Goesmann, Barbara Götz, Thomas Gübitz, Franziska Hufsky, Sebastian Jünemann, Marie-Louise Körner, Manja Marz, Ulisses Nunes Da Rocha, Jörg Overmann, Alfred Pühler, Dietrich Rebholz-Schuhmann, Alexander Sczyrba, Jens Stoye, Justine Vandendorpe, Thea Van Rossum, Alice McHardy

Source: Research Ideas and Outcomes, Vol 9, Iss , Pp 1-107 (2023)

Subject Terms: Research data management, FAIR principles, microbi, Science

File Description: electronic resource

Relation: https://riojournal.com/article/110501/download/pdf/; https://riojournal.com/article/110501/download/xml/; https://riojournal.com/article/110501/; https://doaj.org/toc/2367-7163

Access URL: https://doaj.org/article/f9e47b635a024f7cb2221a8a4f1febda

Discover FDM – Gemeinsam Kompetenzen für Forschungsdatenmanagement von Studierenden fördern

Authors: Jessica Stegemann, Christina Kläre, Ursula Arning, Mirjam Blümm, Matthias Fingerhuth, Konrad U. Förstner, Katharina Fritsch, Janiça Hackenbuchner, Angela Heine, Kerstin Kaiser, Ella Sofie Posny, Torsten Rathmann, Stephanie Rehwald, Lioba Schreyer, Uwe Stadler

Source: o-bib. Das offene Bibliotheksjournal, Vol 10, Iss 4 (2023)

Subject Terms: Forschungsdatenmanagement, Studierende, Community of Practice, Datenkompetenz, Bibliography. Library science. Information resources

File Description: electronic resource

Relation: https://www.o-bib.de/bib/article/view/5979; https://doaj.org/toc/2363-9814

Access URL: https://doaj.org/article/ffe31104efca47aa9a29be79bc9c4f82

The induction of natural competence adapts staphylococcal metabolism to infection

Authors: Mar Cordero, Julia García-Fernández, Ivan C. Acosta, Ana Yepes, Jose Avendano-Ortiz, Clivia Lisowski, Babett Oesterreicht, Knut Ohlsen, Eduardo Lopez-Collazo, Konrad U. Förstner, Ana Eulalio, Daniel Lopez

Source: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a681d83de04a4da58efe8ede82c4aa5f

Der Zertifikatskurs Forschungsdatenmanagement in NRW

Authors: Benjamin Slowig, Mirjam Blümm, Konrad U. Förstner, Marvin Lanczek, Birte Lindstädt, Rabea Müller, Ulrike Nickenig, Stephanie Rehwald, Lioba Schreyer

Source: o-bib. Das offene Bibliotheksjournal, Vol 9, Iss 3 (2022)

Subject Terms: Forschungsdatenmanagement, Zertifikatskurs, Weiterqualifikation, professionelles Datenmanagement, Data Steward, Forschungsdaten, Bibliography. Library science. Information resources

File Description: electronic resource

Relation: https://www.o-bib.de/bib/article/view/5833; https://doaj.org/toc/2363-9814

Access URL: https://doaj.org/article/6f904e3169a441d1a9fde00e235ab268

CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences

Authors: Akinyemi M. Fasemore, Andrea Helbich, Mathias C. Walter, Thomas Dandekar, Gilles Vergnaud, Konrad U. Förstner, Dimitrios Frangoulidis

Source: mSystems, Vol 6, Iss 6 (2021)

Subject Terms: Coxiella burnetii, Q fever, genotyping, Web platform, Coxiella, typing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/adcc441e86574309b3a21ce492f36c58

Identification of BvgA-Dependent and BvgA-Independent Small RNAs (sRNAs) in Bordetella pertussis Using the Prokaryotic sRNA Prediction Toolkit ANNOgesic

Authors: Kyung Moon, Minji Sim, Chin-Hsien Tai, Kyungyoon Yoo, Charlotte Merzbacher, Sung-Huan Yu, David D. Kim, Jaehyun Lee, Konrad U. Förstner, Qing Chen, Scott Stibitz, Leslie G. Knipling, Deborah M. Hinton

Source: Microbiology Spectrum, Vol 9, Iss 2 (2021)

Subject Terms: small RNA, Hfq, BvgAS regulon, pertussis, RNA-seq, ANNOgesic, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/ba3b727b18e24be4a854bd8c0b732ef9

Dual-RNAseq Analysis Unravels Virus-Host Interactions of MetSV and Methanosarcina mazei

Authors: Finn O. Gehlert, Till Sauerwein, Katrin Weidenbach, Urska Repnik, Daniela Hallack, Konrad U. Förstner, Ruth A. Schmitz

Source: Viruses, Vol 14, Iss 11, p 2585 (2022)

Subject Terms: virus–host interaction, archaea, Methanosarcina, MetSV, dual-RNAseq, replication, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/11/2585; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/c43b3b6c44df4772a611395f000eda72

The Leader Peptide peTrpL Forms Antibiotic-Containing Ribonucleoprotein Complexes for Posttranscriptional Regulation of Multiresistance Genes

Authors: Hendrik Melior, Sandra Maaß, Siqi Li, Konrad U. Förstner, Saina Azarderakhsh, Adithi R. Varadarajan, Maximilian Stötzel, Muhammad Elhossary, Susanne Barth-Weber, Christian H. Ahrens, Dörte Becher, Elena Evguenieva-Hackenberg

Source: mBio, Vol 11, Iss 3 (2020)

Subject Terms: antimicrobial compound, leader peptide, multidrug resistance, nucleoprotein complex, posttranscriptional regulation, Agrobacterium tumefaciens, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/8fa148d0902848ea9801627da0c77e64

Tagungsbericht WikiCite 2017

Authors: Philipp Zumstein, Konrad U. Förstner

Source: o-bib. Das offene Bibliotheksjournal, Vol 4, Iss 3, Pp 106-112 (2017)

Subject Terms: Zitationsdaten, Offene Daten, Wikipedia, Wikidata, Bibliography. Library science. Information resources

File Description: electronic resource

Relation: https://www.o-bib.de/article/view/5231; https://doaj.org/toc/2363-9814

Access URL: https://doaj.org/article/2907713161384aa19bb630cbd21e0773

Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress

Authors: Carolin Riedel, Konrad U. Förstner, Christoph Püning, Thomas Alter, Cynthia M. Sharma, Greta Gölz

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: Campylobacter coli, Campylobacter lari, heat stress response, transcriptome sequencing, RNA-seq, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00523/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/506933e039254bb38056815a23971569

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection

Authors: Sara F. Martins Gomes, Alexander J. Westermann, Till Sauerwein, Tobias Hertlein, Konrad U. Förstner, Knut Ohlsen, Marco Metzger, Eric V. Shusta, Brandon J. Kim, Antje Appelt-Menzel, Alexandra Schubert-Unkmeir

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: Neisseria meningitidis, meningococcus, bacteria, stem cells, blood-cerebrospinal fluid barrier, blood-brain barrier, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.01181/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/d4018efb05f74918b5aab3359142cf9f

Identification of Cholecystokinin by Genome-Wide Profiling as Potential Mediator of Serotonin-Dependent Behavioral Effects of Maternal Separation in the Amygdala

Authors: Magdalena T. Weidner, Roy Lardenoije, Lars Eijssen, Floriana Mogavero, Lilian P. M. T. De Groodt, Sandy Popp, Rupert Palme, Konrad U. Förstner, Tatyana Strekalova, Harry W. M. Steinbusch, Angelika G. Schmitt-Böhrer, Jeffrey C. Glennon, Jonas Waider, Daniel L. A. van den Hove, Klaus-Peter Lesch

Source: Frontiers in Neuroscience, Vol 13 (2019)

Subject Terms: serotonin, maternal separation, mouse, emotional behavior, DNA methylation, RNA expression, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fnins.2019.00460/full; https://doaj.org/toc/1662-453X

Access URL: https://doaj.org/article/e9bfdfc3a3f543148df4c4b9e9207fcb

The CARF Protein MM_0565 Affects Transcription of the Casposon-Encoded cas1-solo Gene in Methanosarcina mazei Gö1

Authors: Andrea Ulbricht, Lisa Nickel, Katrin Weidenbach, Herman Vargas Gebauer, Claudia Kießling, Konrad U. Förstner, Ruth A. Schmitz

Source: Biomolecules, Vol 10, Iss 8, p 1161 (2020)

Subject Terms: methanoarchaea, CRISPR-Cas system, transcriptional regulation, adaptation phase, casposon, Methanosarcina mazei, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-273X/10/8/1161; https://doaj.org/toc/2218-273X

Access URL: https://doaj.org/article/8d68504f0b4b42dca2185db381b38938

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium

Authors: Alexander J. Westermann, Elisa Venturini, Mikael E. Sellin, Konrad U. Förstner, Wolf-Dietrich Hardt, Jörg Vogel

Source: mBio, Vol 10, Iss 1 (2019)

Subject Terms: Hfq, noncoding RNA, ProQ, RNA-seq, bacterial pathogen, posttranscriptional control, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/6dd8c7b94485478dae18e18aeea7d1ab

A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation

Authors: Srikkanth Balasubramanian, Joseph Skaf, Ulrike Holzgrabe, Richa Bharti, Konrad U. Förstner, Wilma Ziebuhr, Ute H. Humeida, Usama R. Abdelmohsen, Tobias A. Oelschlaeger

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: marine sponges, Streptomyces, Staphylococci, device-related infections, bioassay-guided fractionation, transcriptome, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2018.01473/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c66861738ecb40f9b771496e330c2af1

The Probiotic Escherichia coli Strain Nissle 1917 Combats Lambdoid Bacteriophages stx and λ

Authors: Susanne Bury, Manonmani Soundararajan, Richa Bharti, Rudolf von Bünau, Konrad U. Förstner, Tobias A. Oelschlaeger

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: probiotic, E. coli Nissle 1917, EHEC, Shiga toxin producing E. coli, stx-phages, lambda-phages, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2018.00929/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/5eefbc8a525d4056a40db437fa24919a

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

Authors: Ines Krohn-Molt, Malik Alawi, Konrad U. Förstner, Alena Wiegandt, Lia Burkhardt, Daniela Indenbirken, Melanie Thieß, Adam Grundhoff, Julia Kehr, Andreas Tholey, Wolfgang R. Streit

Source: Frontiers in Microbiology, Vol 8 (2017)

Subject Terms: microalga–bacteria interaction, phycosphere biofilm, metagenomics, metatranscriptomics, metaproteomics, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fmicb.2017.01941/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/106f0ca6f2374d0e83301efe64b28821

Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases

Authors: Daria Lavysh, Maria Sokolova, Marina Slashcheva, Konrad U. Förstner, Konstantin Severinov

Source: mBio, Vol 8, Iss 1 (2017)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/4a3c2ce030d9478082c030048aab4b16

Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung

Authors: Jozef Dingemans, Pieter Monsieurs, Sung-Huan Yu, Aurélie Crabbé, Konrad U. Förstner, Anne Malfroot, Pierre Cornelis, Rob Van Houdt

Source: mBio, Vol 7, Iss 4 (2016)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/05128c73b386434ea76ccf56e7e1fe95

Phenotypic heterogeneity affects Stenotrophomonas maltophilia K279a colony morphotypes and β-lactamase expression

Authors: Ebrahim Mama Abda, Dagmar eKrysciak, Ines eKrohn-Molt, Uwe eMamat, Christel eSchmeisser, Konrad U. Förstner, Ulrich E. Schaible, Thomas A. Kohl, Stefan eNieman, Wolfgang R. Streit

Source: Frontiers in Microbiology, Vol 6 (2015)

Subject Terms: Stenotrophomonas maltophilia, RNA-Seq, antibiotic resistance, Phenotypic heterogeneity, β-lactamases, colony morphotypes, Microbiology, QR1-502

File Description: electronic resource

Relation: http://journal.frontiersin.org/Journal/10.3389/fmicb.2015.01373/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/529f5d551413404aba49ccf6b62728dd