Possible monitoring of mesophotic scleractinian corals using an underwater mini-ROV to sample coral eDNA

Authors: Koki Nishitsuji, Shinichiro Nagahama, Haruhi Narisoko, Kazuo Shimada, Nobuhiro Okada, Yuki Shimizu, Noriyuki Satoh

Source: Royal Society Open Science, Vol 11, Iss 2 (2024)

Subject Terms: mesophotic scleractinian corals, a possible survey, coral-specific eDNA, underwater mini-ROVs, genera-level detection, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2054-5703

Access URL: https://doaj.org/article/8230c78c7b7a4ee9bba4f5f69716ef9f

Fish and coral assemblages of a highly isolated oceanic island: The first eDNA survey of the Ogasawara Islands

Authors: Ayşe Haruka Oshima Açıkbaş, Haruhi Narisoko, Roger Huerlimann, Koki Nishitsuji, Noriyuki Satoh, James Davis Reimer, Timothy Ravasi

Source: Environmental DNA, Vol 6, Iss 1, Pp n/a-n/a (2024)

Subject Terms: coral reefs, environmental DNA, fish, marine biodiversity, metabarcoding, oceanic islands, Environmental sciences, GE1-350, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2637-4943

Access URL: https://doaj.org/article/197176d04030451fa2f30f3cca1a4229

Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate

Authors: Girish Beedessee, Takaaki Kubota, Asuka Arimoto, Koki Nishitsuji, Ross F. Waller, Kanako Hisata, Shinichi Yamasaki, Noriyuki Satoh, Jun’ichi Kobayashi, Eiichi Shoguchi

Source: BMC Biology, Vol 18, Iss 1, Pp 1-16 (2020)

Subject Terms: Polyketide synthases, Harmful algal blooms, Dinoflagellates, Iso-Seq, Duplication, Amphidinium, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12915-020-00873-6; https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/c535c47f350d48cca8f255536fceb392

Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus

Authors: Koki Nishitsuji, Asuka Arimoto, Yoshitaka Yonashiro, Kanako Hisata, Manabu Fujie, Mayumi Kawamitsu, Eiichi Shoguchi, Noriyuki Satoh

Source: BMC Genomics, Vol 21, Iss 1, Pp 1-12 (2020)

Subject Terms: Genome decoding, Cladosiphon strains, Sets of genes, Sub-speciation, Aquaculture, Pan-genome, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-06792-8; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/54ed46b4f77447bd867bcab637ec34df

Corrigendum: In vitro Symbiosis of Reef-Building Coral Cells With Photosynthetic Dinoflagellates

Authors: Kaz Kawamura, Satoko Sekida, Koki Nishitsuji, Eiichi Shoguchi, Kanako Hisata, Shigeki Fujiwara, Noriyuki Satoh

Source: Frontiers in Marine Science, Vol 8 (2021)

Subject Terms: In vitro symbiosis, corals, dinoflagellates, Acropora, endoderm, phagocytosis, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2021.800737/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/3333cac8fd0a4125817a3f6ad464287a

Novel Mitochondrial DNA Markers for Scleractinian Corals and Generic-Level Environmental DNA Metabarcoding

Authors: Chuya Shinzato, Haruhi Narisoko, Koki Nishitsuji, Tomofumi Nagata, Noriyuki Satoh, Jun Inoue

Source: Frontiers in Marine Science, Vol 8 (2021)

Subject Terms: scleractinia, mitochondrial genome, primer development, metabarcoding analyses, environmental DNA (eDNA), Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2021.758207/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/c1a2ab069bc849c0b0f23597abc3943c

Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus

Authors: Satoshi Kawato, Koki Nishitsuji, Asuka Arimoto, Kanako Hisata, Mayumi Kawamitsu, Reiko Nozaki, Hidehiro Kondo, Chuya Shinzato, Tsuyoshi Ohira, Noriyuki Satoh, Eiichi Shoguchi, Ikuo Hirono

Source: G3: Genes, Genomes, Genetics, Vol 11, Iss 11 (2021)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/2c30f50952d04e03a0891cf95eaec704

In vitro Symbiosis of Reef-Building Coral Cells With Photosynthetic Dinoflagellates

Authors: Kaz Kawamura, Satoko Sekida, Koki Nishitsuji, Eiichi Shoguchi, Kanako Hisata, Shigeki Fujiwara, Noriyuki Satoh

Source: Frontiers in Marine Science, Vol 8 (2021)

Subject Terms: in vitro symbiosis, corals, dinoflagellates, Acropora, endoderm, phagocytosis, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2021.706308/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/53cff43ce2af43d6abf8c0df5df0af8d

A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum

Authors: Noriyuki Satoh, Hitoshi Tominaga, Masato Kiyomoto, Kanako Hisata, Jun Inoue, Koki Nishitsuji

Source: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

Subject Terms: scRNA-seq analysis, amphioxus embryos, two Brachyury genes, notochord, somites, blastopore, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.696875/full; https://doaj.org/toc/2296-634X

Access URL: https://doaj.org/article/017196a7222743beaa63318a9287c898

The complete mitochondrial genome of the aquatic coralsnake Micrurus surinamensis (Reptilia, Serpentes, Elapidae)

Authors: Anita de Moura Pessoa, Rhewter Nunes, Mariana Pires de Campos Telles, Koki Nishitsuji, Kanako Hisata, Steven D. Aird, Alexander S. Mikheyev, Nelson Jorge da Silva

Source: Mitochondrial DNA. Part B. Resources, Vol 5, Iss 1, Pp 233-235 (2020)

Subject Terms: mitochondrion, elapid snakes, snake genomics, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/0cad61aefe9040ac8e5da8a088324cac

A draft genome of the striped catfish, Pangasianodon hypophthalmus, for comparative analysis of genes relevant to development and a resource for aquaculture improvement

Authors: Oanh T. P. Kim, Phuong T. Nguyen, Eiichi Shoguchi, Kanako Hisata, Thuy T. B. Vo, Jun Inoue, Chuya Shinzato, Binh T. N. Le, Koki Nishitsuji, Miyuki Kanda, Vu H. Nguyen, Hai V. Nong, Noriyuki Satoh

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)

Subject Terms: Striped catfish, Draft nuclear genome, Gadusol biosynthetic genes, Vitamin D-binding protein, cPLA2, Hox cluster, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-5079-x; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/789a5fe8351d4ca08c48a72031276c7b

Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution

Authors: Yuka Sekigami, Takuya Kobayashi, Ai Omi, Koki Nishitsuji, Tetsuro Ikuta, Asao Fujiyama, Noriyuki Satoh, Hidetoshi Saiga

Source: Zoological Letters, Vol 3, Iss 1, Pp 1-11 (2017)

Subject Terms: Hox gene cluster, Ascidian, Tunicate (urochordate) evolution, Halocynthia roretzi, Zoology, QL1-991

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40851-017-0078-3; https://doaj.org/toc/2056-306X

Access URL: https://doaj.org/article/e28e1258cce244b88bc7512ebdc9ece1

Note to: Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution

Authors: Yuka Sekigami, Takuya Kobayashi, Ai Omi, Koki Nishitsuji, Tetsuro Ikuta, Asao Fujiyama, Noriyuki Satoh, Hidetoshi Saiga

Source: Zoological Letters, Vol 5, Iss 1, Pp 1-3 (2019)

Subject Terms: Phylogenetic relationship, Tunicates, Ascidians, Hox gene cluster, Disintegration, Zoology, QL1-991

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40851-019-0121-7; https://doaj.org/toc/2056-306X

Access URL: https://doaj.org/article/73675224d31c4db1a973e7e80d2e5c4b

A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.

Authors: Koki Nishitsuji, Asuka Arimoto, Kenji Iwai, Yusuke Sudo, Kanako Hisata, Manabu Fujie, Nana Arakaki, Tetsuo Kushiro, Teruko Konishi, Chuya Shinzato, Noriyuki Satoh, Eiichi Shoguchi

Source: DNA Research; Dec2016, Vol. 23 Issue 6, p561-570, 10p