Epigenome‐wide association study using peripheral blood leukocytes identifies genomic regions associated with periodontal disease and edentulism in the Atherosclerosis Risk in Communities study

Authors: Zhao, Naisi, Teles, Flavia, Lu, Jiayun, Koestler, Devin C., Beck, James, Boerwinkle, Eric, Bressler, Jan, Kelsey, Karl T., Platz, Elizabeth A., Michaud, Dominique S.

Source: Journal of clinical periodontology. 50(9):1140-1153

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190305584.0x000001&indx=1&recIds=ETOCvdc_100190305584.0x000001

Calculating detection limits and uncertainty of reference-based deconvolution of whole-blood DNA methylation data

Authors: Bell-Glenn, Shelby, Salas, Lucas A, Molinaro, Annette M, Butler, Rondi A, Christensen, Brock C, Kelsey, Karl T, Wiencke, John K, Koestler, Devin C

Source: Epigenomics. 15(7):435-451

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189311251.0x000001&indx=1&recIds=ETOCvdc_100189311251.0x000001

Assessing Breast Cancer Molecular Subtypes Using Extracellular Vesicles' mRNA

Authors: Hu, Mengjia, Brown, Virginia, Jackson, Joshua M., Wijerathne, Harshani, Pathak, Harsh, Koestler, Devin C., Nissen, Emily, Hupert, Mateusz L., Muller, Rolf, Godwin, Andrew K.

Source: Analytical chemistry. 95(19):7665-7675

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632558555&indx=1&recIds=ETOCRN632558555

Antibodies to oral pathobionts and colon cancer risk in the CLUE I cohort study

Authors: Debertin, Julia, Teles, Flavia, Martin, Lynn M., Lu, Jiayun, Koestler, Devin C., Kelsey, Karl T., Beck, James D., Platz, Elizabeth A., Michaud, Dominique S.

Source: International journal of cancer. 153(2):302-311

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182474710.0x000001&indx=1&recIds=ETOCvdc_100182474710.0x000001

Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Healthcare Records

Authors: Thompson, Jeffrey, Hu, Jinxiang, Mudaranthakam, Dinesh Pal, Streeter, David, Neums, Lisa, Park, Michele, Koestler, Devin C., Gajewski, Byron, Mayo, Matthew S.

Subject Terms: Computer Science - Computation and Language, Computer Science - Computers and Society

Access URL: http://arxiv.org/abs/1812.02627

Comprehensive exploration of JQ1 and GSK2801 targets in breast cancer using network pharmacology and molecular modeling approaches

Authors: Yellapu, Nanda Kumar, Pei, Dong, Nissen, Emily, Thompson, Jeffrey A., Koestler, Devin C.

Source: In Computational and Structural Biotechnology Journal 2023 21:3224-3233

Pre-diagnosis neutrophil-to-lymphocyte ratio and mortality in individuals who develop lung cancer

Authors: Grieshober, Laurie, Graw, Stefan, Barnett, Matt J., Goodman, Gary E., Chen, Chu, Koestler, Devin C., Marsit, Carmen J., Doherty, Jennifer A.

Source: Cancer Causes & Control, 2021 Nov 01. 32(11), 1227-1236.

Access URL: https://www.jstor.org/stable/48757332

Rates of bone reabsorption and union in mandibular reconstruction using the osteocutaneous radial forearm free flap

Authors: Karadaghy, Omar A., Mussatto, Caroline C., Schatz, Benjamin A., Li, Jennifer, Norris, Taylor W., Nallani, Rohit, Shnayder, Lisa, Kakarala, Kiran, Tsue, Terance T., Girod, Douglas A., Li, Yanming, Koestler, Devin C., Villwock, Mark R., Harn, Nick, Bur, Andrés M.

Source: Head & neck. 44(2):420-430

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138908771.0x000001&indx=1&recIds=ETOCvdc_100138908771.0x000001

Identification of a foetal epigenetic compartment in adult human kidney

Authors: Wiencke, John K., Zhang, Ze, Koestler, Devin C., Salas, Lucas A., Molinaro, Annette M., Christensen, Brock C., Kelsey, Karl T.

Source: Epigenetics. 17(3):335-355

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100176325174.0x000001&indx=1&recIds=ETOCvdc_100176325174.0x000001

Selenium-associated differentially expressed microRNAs and their targeted mRNAs across the placental genome in two U.S. birth cohorts

Authors: Tian, Fu-Ying, Kennedy, Elizabeth M., Hermetz, Karen, Burt, Amber, Everson, Todd M., Punshon, Tracy, Jackson, Brian P., Hao, Ke, Chen, Jia, Karagas, Margaret R., Koestler, Devin C., Marsit, Carmen

Source: Epigenetics. 17(10):1234-1245

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165283725.0x000001&indx=1&recIds=ETOCvdc_100165283725.0x000001

Epigenome-wide scan identifies differentially methylated regions for lung cancer using pre-diagnostic peripheral blood

Authors: Zhao, Naisi, Ruan, Mengyuan, Koestler, Devin C., Lu, Jiayun, Marsit, Carmen J., Kelsey, Karl T., Platz, Elizabeth A., Michaud, Dominique S.

Source: Epigenetics. 17(4):460-472

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100145919803.0x000001&indx=1&recIds=ETOCvdc_100145919803.0x000001

Interactions of Age and Blood Immune Factors and Noninvasive Prediction of Glioma Survival

Authors: Molinaro, Annette M, Wiencke, John K, Warrier, Gayathri, Koestler, Devin C, Chunduru, Pranathi, Lee, Ji Yoon, Hansen, Helen M, Lee, Sean, Anguiano, Joaquin, Rice, Terri, Bracci, Paige M, McCoy, Lucie, Salas, Lucas A, Christensen, Brock C, Wrensch, Margaret, Kelsey, Karl T, Taylor, Jennie W, Clarke, Jennifer L

Source: Journal of the National Cancer Institute. 114(3):446-457

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100144309181.0x000001&indx=1&recIds=ETOCvdc_100144309181.0x000001

DNA methylation ageing clocks and pancreatic cancer risk: pooled analysis of three prospective nested case-control studies

Authors: Chung, Mei, Ruan, Mengyuan, Zhao, Naisi, Koestler, Devin C., De Vivo, Immaculata, Kelsey, Karl T., Michaud, Dominique S.

Source: Epigenetics. 16(12):1306-1316

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100135649257.0x000001&indx=1&recIds=ETOCvdc_100135649257.0x000001

A ketogenic diet differentially affects neuron and astrocyte transcription

Authors: Koppel, Scott J., Pei, Dong, Wilkins, Heather M., Weidling, Ian W., Wang, Xiaowan, Menta, Blaise W., Perez‐Ortiz, Judit, Kalani, Anuradha, Manley, Sharon, Novikova, Lesya, Koestler, Devin C., Swerdlow, Russell H.

Source: Journal of neurochemistry. 157(6):1930-1945

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100123874754.0x000001&indx=1&recIds=ETOCvdc_100123874754.0x000001

Placental microRNA expression associates with birthweight through control of adipokines: results from two independent cohorts

Authors: Kennedy, Elizabeth M., Hermetz, Karen, Burt, Amber, Everson, Todd M., Deyssenroth, Maya, Hao, Ke, Chen, Jia, Karagas, Margaret R, Pei, Dong, Koestler, Devin C, Marsit, Carmen J

Source: Epigenetics. 16(7):770-782

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100121697808.0x000001&indx=1&recIds=ETOCvdc_100121697808.0x000001

MicroRNA Profiling as a Methodology to Diagnose Ménière's Disease: Potential Application of Machine Learning

Authors: Shew, Matthew, Wichova, Helena, Bur, Andres, Koestler, Devin C., St Peter, Madeleine, Warnecke, Athanasia, Staecker, Hinrich

Source: Otolaryngology and head and neck surgery. 164(2):399-406

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN626478747&indx=1&recIds=ETOCRN626478747

Methylation cytometric pretreatment blood immune profiles with tumor mutation burden as prognostic indicators for survival outcomes in head and neck cancer patients on anti-PD-1 therapy.

Authors: Zhang, Ze, Sehgal, Kartik, Shirai, Keisuke, Butler, Rondi A., Wiencke, John K., Koestler, Devin C., Ramush, Geat, Lee, Min Kyung, Molinaro, Annette M., Stolrow, Hannah G., Birnbaum, Ariel, Salas, Lucas A., Haddad, Robert I., Kelsey, Karl T., Christensen, Brock C.

Source: NPJ Precision Oncology; 11/18/2024, Vol. 8 Issue 1, p1-10, 10p

Subject Terms: MONOCYTE lymphocyte ratio, NEUTROPHIL lymphocyte ratio, IMMUNE checkpoint inhibitors, OVERALL survival, SQUAMOUS cell carcinoma, HEAD & neck cancer

Proteomic profiling of bronchoalveolar lavage fluid uncovers protein clusters linked to survival in idiopathic forms of interstitial lung disease.

Authors: Ngo, Linh T., Rekowski, Michaella J., Koestler, Devin C., Takafumi Yorozuya, Atsushi Saito, Azeem, Imaan, Harrison, Alexis, Demoruelle, M. Kristen, Boomer, Jonathan, England, Bryant R., Wolters, Paul, Molyneaux, Philip L., Castro, Mario, Lee, Joyce S., Solomon, Joshua J., Koronuma, Koji, Washburn, Michael P., Matson, Scott M.

Source: ERJ Open Research; Nov2024, Vol. 10 Issue 6, p1-12, 12p

Improving the efficiency of clinical trials by standardizing processes for Investigator Initiated Trials

Authors: Mudaranthakam, Dinesh Pal, Phadnis, Milind A., Krebill, Ron, Clark, Lauren, Wick, Jo A., Thompson, Jeffrey, Keighley, John, Gajewski, Byron J., Koestler, Devin C., Mayo, Matthew S.

Source: In Contemporary Clinical Trials Communications June 2020 18

Coexpression of FOXP3 and a Helios isoform enhances the effectiveness of human engineered regulatory T cells

Authors: Seng, Amara, Krausz, Kelsey L., Pei, Dong, Koestler, Devin C., Fischer, Ryan T., Yankee, Thomas M., Markiewicz, Mary A. ^*

Source: In Blood Advances 14 April 2020 4(7):1325-1339