Systematic Optimization of Automated Phosphopeptide Enrichment for High-Sensitivity Phosphoproteomics

Authors: Bortel, Patricia, Piga, Ilaria, Koenig, Claire, Gerner, Christopher, Martinez-Val, Ana, Olsen, Jesper V.

Source: In Molecular & Cellular Proteomics May 2024 23(5)

Atypical cofilin signaling drives dendritic cell migration through the extracellular matrix via nuclear deformation

Authors: Warner, Harry ¹, Franciosa, Giulia ^{2, 8}, van der Borg, Guus ^{3, 8}, Coenen, Britt ¹, Faas, Felix ¹, Koenig, Claire ², de Boer, Rinse ¹, Classens, René ⁴, Maassen, Sjors ¹, Baranov, Maksim V. ¹, Mahajan, Shweta ¹, Dabral, Deepti ¹, Bianchi, Frans ¹, van Hilten, Niek ⁵, Risselada, Herre Jelger ^{5, 6}, Roos, Wouter H. ³, Olsen, Jesper Velgaard ², Cano, Laia Querol ⁴, van den Bogaart, Geert ^{1, 7, 9, ∗}

Source: In Cell Reports 26 March 2024 43(3)

French Neonatal Society issues recommendations on preventing nasal injuries in preterm newborn infants during non‐invasive respiratory support

Authors: Zores, Claire, Zana‐Taïeb, Elodie, Caeymaex, Laurence, Fumeaux, Céline Fischer, Kuhn, Pierre, Allen, Aurore, Audeoud, Frédérique, Bouvard, Charlotte, Brandicourt, Anne, Duboz, Marie Agnès, Evrard, Anne, Fichtner, Christine, Fischer‐Fumeaux, Céline, Girard, Laurence, Gonnaud, Françoise, Hüppi, Petra, Knezovic, Nadine, Laprugne, Elisabeth, Legouais, Sophie, Mons, Fabienne, Muller, Jean‐Baptiste, Picaud, Jean‐Charles, Pierrat, Véronique, Pladys, Patrick, Reynaud, Audrey, Renesme, Laurent, Rideau, Aline, Sizun, Jacques, Souet, Gilles, Thiriez, Gérard, Tourneux, Pierre, Touzet, Marie, Truffert, Patrick, Tscherning, Charlotte, Zaoui, Catherine, Zana‐Taieb, Elodie, Zores‐Koenig, Claire

Source: Acta pædiatrica. 112(9):1849-1859

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190076664.0x000001&indx=1&recIds=ETOCvdc_100190076664.0x000001

Recommendations for use of adhesives on hospitalized newborns: A systematic review of the literature

Authors: Allen, Aurore, Audeoud, Frédérique, Bouvard, Charlotte, Brandicourt, Anne, Caeymaex, Laurence, Duboz, Marie Agnès, Evrard, Anne, Fichtner, Christine, Fischer-Fumeaux, Céline, Girard, Laurence, Gonnaud, Françoise, Hüppi, Petra, Knezovic, Nadine, Kuhn, Pierre, Laprugne-Garcia, Elisabeth, Legouais, Sophie, Mons, Fabienne, Muller, Jean-Baptiste, Picaud, Jean-Charles, Pierrat, Véronique, Pladys, Patrick, Reynaud, Audrey, Renesme, Laurent, Rideau, Aline, Sizun, Jacques, Souet, Gilles, Thiriez, Gérard, Tourneux, Pierre, Touzet, Marie, Truffert, Patrick, Tscherning, Charlotte, Zaoui, Catherine, Zana-Taieb, Elodie, Zores-Koenig, Claire, Zana-Taïeb, Elodie

Source: In Archives de pédiatrie October 2023 30(7):486-492

Practical recommendations on room sizes for hospitalised newborn infants and their families based on a systematic review of the literature

Authors: Zana‐Taïeb, Elodie, Sizun, Jacques, Kuhn, Pierre, Reynaud, Audrey, Allen, Aurore, Berne‐Audeoud, Frédérique, Bouvard, Charlotte, Brandicourt, Anne, Caeymaex, Laurence, Denoual, Hélène, Duboz, Marie Agnès, Evrard, Anne, Fichtner, Christine, Fischer‐Fumeaux, Céline, Girard, Laurence, Gonnaud, Françoise, Haumont, Dominique, Hüppi, Petra, Knezovic, Nadine, Laprugne‐Garcia, Elisabeth, Legouais, Sophie, Mons, Fabienne, Pelofy, Valérie, Picaud, Jean‐Charles, Pierrat, Véronique, Pladys, Patrick, Renesme, Laurent, Rideau, Aline, Souet, Gilles, Tscherning, Charlotte, Thiriez, Gérard, Tourneux, Pierre, Touzet, Marie, Truffert, Patrick, Zaoui, Catherine, Zores‐Koenig, Claire

Source: Acta pædiatrica. 111(6):1109-1114

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163869183.0x000001&indx=1&recIds=ETOCvdc_100163869183.0x000001

Automated High-Throughput Biological Sex Identification from Archeological Human Dental Enamel Using Targeted Proteomics.

Authors: Koenig, Claire, Bortel, Patricia, Paterson, Ryan S., Rendl, Barbara, Madupe, Palesa P., Troché, Gaudry B., Hermann, Nuno Vibe, Martínez de Pinillos, Marina, Martinón-Torres, María, Mularczyk, Sandra, Schjellerup Jørkov, Marie Louise, Gerner, Christopher, Kanz, Fabian, Martinez-Val, Ana, Cappellini, Enrico, Olsen, Jesper V.

Source: Journal of Proteome Research; 11/1/2024, Vol. 23 Issue 11, p5107-5121, 15p

Recommendations on neonatal light environment from the French Neonatal Society

Authors: Zores‐Koenig, Claire, Kuhn, Pierre, Caeymaex, Laurence, Allen, Aurore, Berne‐Audeoud, Frédérique, Bouvard, Charlotte, Brandicourt, Anne, Casper, Charlotte, Denoual, Hélène, Duboz, Marie Agnès, Evrard, Anne, Fichtner, Christine, Fischer‐Fumeaux, Céline, Girard, Laurence, Gonnaud, Françoise, Haumont, Dominique, Hüppi, Petra, Knezovic, Nadine, Laprugne‐Garcia, Elisabeth, Legouais, Sophie, Mons, Fabienne, Pelofy, Valérie, Picaud, Jean‐Charles, Pierrat, Véronique, Pladys, Patrick, Renaud, Audrey, Renesme, Laurent, Sizun, Jacques, Souet, Gilles, Thiriez, Gérard, Tourneux, Pierre, Touzet, Marie, Truffert, Patrick, Zaoui, Catherine, Zana‐Taieb, Elodie

Source: Acta pædiatrica. 109(7):1292-1301

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107381796.0x000001&indx=1&recIds=ETOCvdc_100107381796.0x000001

Deep-time phylogenetic inference by paleoproteomic analysis of dental enamel.

Authors: Taurozzi, Alberto J., Rüther, Patrick L., Patramanis, Ioannis, Koenig, Claire, Sinclair Paterson, Ryan, Madupe, Palesa P., Harking, Florian Simon, Welker, Frido, Mackie, Meaghan, Ramos-Madrigal, Jazmín, Olsen, Jesper V., Cappellini, Enrico

Source: Nature Protocols; Jul2024, Vol. 19 Issue 7, p2085-2116, 32p

Optimal analytical strategies for sensitive and quantitative phosphoproteomics using TMT‐based multiplexing

Authors: Koenig, Claire, Martinez‐Val, Ana, Franciosa, Giulia, Olsen, Jesper V.

Source: Proteomics. 22(19-20)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163074599.0x000001&indx=1&recIds=ETOCvdc_100163074599.0x000001

Neonatal imitation, activation of the mirror neuron system and neurodevelopmental outcome of preterm infants

Authors: Zores Koenig, Claire, Kuhn, Pierre

Source: Acta pædiatrica. 111(9):1829-1830

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164067390.0x000001&indx=1&recIds=ETOCvdc_100164067390.0x000001

Maternal autism-associated IgG antibodies delay development and produce anxiety in a mouse gestational transfer model

Authors: Braunschweig, Daniel, Golub, Mari S., Koenig, Claire M., Qi, Lihong, Pessah, Isaac N., Van de Water, Judy, Berman, Robert F.

Source: In Journal of Neuroimmunology 15 November 2012 252(1-2):56-65

Maternal transfer of BDE-47 to offspring and neurobehavioral development in C57BL/6J mice

Authors: Koenig, Claire M., Lango, Jozsef, Pessah, Isaac N., Berman, Robert F.

Source: In Neurotoxicology and Teratology November-December 2012 34(6):571-580

Bioaccumulation and behavioral effects of 2,2′,4,4′-tetrabromodiphenyl ether (BDE-47) in perinatally exposed mice

Authors: Ta, Tram Anh, Koenig, Claire M., Golub, Mari S., Pessah, Isaac N., Qi, Lihong, Aronov, Pavel A., Berman, Robert F.

Source: In Neurotoxicology and Teratology 2011 33(3):393-404

Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog

Authors: Tsutaya, Takumi, Mackie, Meaghan, Koenig, Claire, Sato, Takao, Weber, Andrzej W., Kato, Hirofumi, Olsen, Jesper V., Cappellini, Enrico

Source: Scientific reports. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131440985.0x000001&indx=1&recIds=ETOCvdc_100131440985.0x000001

Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids.

Authors: Martínez-Val, Ana, Fort, Kyle, Koenig, Claire, Van der Hoeven, Leander, Franciosa, Giulia, Moehring, Thomas, Ishihama, Yasushi, Chen, Yu-ju, Makarov, Alexander, Xuan, Yue, Olsen, Jesper V.

Source: Nature Communications; 6/16/2023, Vol. 14 Issue 1, p1-18, 18p

Subject Terms: ACQUISITION of data, CANCER cell culture, TANDEM mass spectrometry, PROTEOMICS, MASS spectrometry, HELA cells, RADIOLABELING

Protocol for high-throughput semi-automated label-free- or TMT-based phosphoproteome profiling

Authors: Koenig, Claire ¹, Martinez-Val, Ana ^{1, 5, ∗}, Naicker, Previn ^{2, 3}, Stoychev, Stoyan ^{3, 4, 6, ∗∗}, Jordaan, Justin ³, Olsen, Jesper V. ¹

Source: In STAR Protocols 15 September 2023 4(3)

Characterizing Local Acute Irritation Properties of Captan and Folpet with New Approach Methods.

Authors: Kluxen, Felix M., Roper, Clive S., Jensen, Signe M., Koenig, Claire M.

Source: Applied In Vitro Toxicology; Sep2022, Vol. 8 Issue 3, p83-101, 19p

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution.

Authors: Martinez-Val, Ana, Bekker-Jensen, Dorte B., Steigerwald, Sophia, Koenig, Claire, Østergaard, Ole, Mehta, Adi, Tran, Trung, Sikorski, Krzysztof, Torres-Vega, Estefanía, Kwasniewicz, Ewa, Brynjólfsdóttir, Sólveig Hlín, Frankel, Lisa B., Kjøbsted, Rasmus, Krogh, Nicolai, Lundby, Alicia, Bekker-Jensen, Simon, Lund-Johansen, Fridtjof, Olsen, Jesper V.

Source: Nature Communications; 12/7/2021, Vol. 12 Issue 1, p1-17, 17p

Subject Terms: RIBOSOMAL proteins, CELL fractionation, SUBCELLULAR fractionation, EPIDERMAL growth factor receptors, EUKARYOTIC cells, INVOLUNTARY relocation

Flurochloridone: a male rat-specific reproductive toxicant?

Authors: Kluxen, Felix M., Bomann, Werner H., Schutte, Maaike E., Koenig, Claire M., Holmes, Thomas J., Mehta, Jyotigna M.

Source: REPRODUCTIVE TOXICOLOGY -NEW YORK. 88:34-34

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100087815571.0x000001&indx=1&recIds=ETOCvdc_100087815571.0x000001

Lack of Evidence for Neonatal Misoprostol Neurodevelopmental Toxicity in C57BL6/J Mice.

Authors: Koenig, Claire M.^1,2, Walker, Cheryl K.^1,3, Qi, Lihong^1,4, Pessah, Isaac N.^1,5, Berman, Robert F.^1,2 rfberman@ucdavis.edu

Source: PLoS ONE. Jun2012, Vol. 7 Issue 6, p1-7. 7p.

Subject Terms: *PROSTAGLANDIN E1, *UTERINE contraction, *PROSTAGLANDINS E, *DEVELOPMENTAL disabilities, *AUTISM