Single-Nucleus RNA Sequencing Reveals Loss of Distal Convoluted Tubule 1 Renal Tubules in HIV Viral Protein R Transgenic Mice

Authors: Latt, Khun Zaw, Yoshida, Teruhiko, Shrivastav, Shashi, Abedini, Amin, Reece, Jeff M., Sun, Zeguo, Lee, Hewang, Okamoto, Koji, Dagur, Pradeep, Ishimoto, Yu, Heymann, Jurgen, Zhao, Yongmei, Chung, Joon-Yong, Hewitt, Stephen, Jose, Pedro A., Lee, Kyung, He, John Cijiang, Winkler, Cheryl A., Knepper, Mark A., Kino, Tomoshige, Rosenberg, Avi Z., Susztak, Katalin, Kopp, Jeffrey B.

Source: In The American Journal of Pathology October 2024 194(10):1844-1856

Multiomics Analyses Reveal Sex Differences in Mouse Renal Proximal Subsegments

Authors: Chen, Lihe, Chou, Chung-Lin, Yang, Chin-Rang, Knepper, Mark A.

Source: Journal of the American Society of Nephrology. 34(5):829-845

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632309622&indx=1&recIds=ETOCRN632309622

Maurice B. Burg (1931–2022), discoverer of kidney transport mechanisms

Authors: Knepper, Mark A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Jul . 119(30), 1-2.

Access URL: https://www.jstor.org/stable/27171961

Using CRISPR-Cas9/phosphoproteomics to identify substrates of calcium/calmodulin-dependent kinase 2δ

Authors: Park, Euijung, Yang, Chin-Rang, Raghuram, Viswanathan, Chen, Lihe, Chou, Chung-Lin, Knepper, Mark A.

Source: In Journal of Biological Chemistry December 2023 299(12)

'ADPKD-omics': determinants of cyclic AMP levels in renal epithelial cells

Authors: Mehta, Yash R., Lewis, Spencer A., Leo, Kirby T., Chen, Lihe, Park, Euijung, Raghuram, Viswanathan, Chou, Chung-Lin, Yang, Chin-Rang, Kikuchi, Hiroaki, Khundmiri, Syed, Poll, Brian G., Knepper, Mark A.

Source: Kidney international. 101(1):47-62

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100180894007.0x000001&indx=1&recIds=ETOCvdc_100180894007.0x000001

A distal convoluted tubule‐specific isoform of murine SLC41A3 extrudes magnesium.

Authors: Franken, Gijs A. C., Bosman, Willem, Jung, Hyun Jun, Bos, Caro, Latta, Femke, Knepper, Mark, Hoenderop, Joost G. J., de Baaij, Jeroen H. F.

Source: Acta Physiologica; Mar2025, Vol. 241 Issue 3, p1-14, 14p

Subject Terms: KIDNEY physiology, BIOLOGICAL transport, KIDNEY tubules, GENE expression, TRANSCRIPTOMES

Phosphoproteomic response to epidermal growth factor in native rat inner medullary collecting duct.

Authors: Chou, Chung-Lin, Jayatissa, Nipun U., Kichula, Elena T., Ou, Shuo-Ming, Limbutara, Kavee, Knepper, Mark A.

Source: American Journal of Physiology: Renal Physiology; Jan2025, Vol. 328 Issue 1, pF29-F47, 19p

Subject Terms: PHOSPHOPROTEINS, SALINE waters, GENETIC translation, MASS spectrometry, CELL communication

A brief history of the cortical thick ascending limb: a systems-biology perspective.

Authors: Sohail, Shahzad K., Jayatissa, Nipun U., Mejia, Raymond, Khan, Shaza, Chou, Chung-Lin, Yang, Chin-Rang, Knepper, Mark A.

Source: American Journal of Physiology: Renal Physiology; Jan2025, Vol. 328 Issue 1, pF82-F94, 13p

Subject Terms: CARRIER proteins, DRINKING (Physiology), BIOLOGICAL transport, NEPHRONS, SYSTEMS biology

A high performance algorithm for clustering of large-scale protein mass spectrometry data using multi-core architectures

Authors: Saeed, Fahad, Hoffert, Jason D., Knepper, Mark A.

Source: 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2013) Advances in Social Networks Analysis and Mining (ASONAM), 2013 IEEE/ACM International Conference on. :923-930 Aug, 2013

Relation: 2013 International Conference on Advances in Social Networks Analysis and Mining (ASONAM)

An efficient algorithm for clustering of large-scale mass spectrometry data

Authors: Saeed, Fahad, Pisitkun, Trairak, Knepper, Mark A., Hoffert, Jason D.

Source: 2012 IEEE International Conference on Bioinformatics and Biomedicine Bioinformatics and Biomedicine (BIBM), 2012 IEEE International Conference on. :1-4 Oct, 2012

Relation: 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

An efficient dynamic programming algorithm for phosphorylation site assignment of large-scale mass spectrometry data

Authors: Saeed, Fahad, Pisitkun, Trairak, Hoffert, Jason D., Wang, Guanghui, Gucek, Marjan, Knepper, Mark A.

Source: 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops Bioinformatics and Biomedicine Workshops (BIBMW), 2012 IEEE International Conference on. :618-625 Oct, 2012

Relation: 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)

Phosphoproteomic Identification of Vasopressin/cAMP/Protein Kinase A–Dependent Signaling in Kidney

Authors: Salhadar, Karim, Matthews, Allanah, Raghuram, Viswanathan, Limbutara, Kavee, Yang, Chin-Rang, Datta, Arnab ¹, Chou, Chung-Lin, Knepper, Mark A. ^*

Source: In Molecular Pharmacology May 2021 99(5):358-369

Phosphoproteomic identification of vasopressin‐regulated protein kinases in collecting duct cells

Authors: Datta, Arnab, Yang, Chin‐Rang, Salhadar, Karim, Park, Euijung, Chou, Chung‐Lin, Raghuram, Viswanathan, Knepper, Mark A.

Source: British journal of pharmacology. 178(6):1426-1444

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100124116855.0x000001&indx=1&recIds=ETOCvdc_100124116855.0x000001

Bayesian mapping of protein kinases to vasopressin-regulated phosphorylation sites in renal collecting duct.

Authors: Deshpande, Venkatesh, Park, Euijung, Jayatissa, Nipun U., Khan, Shaza, Mejia, Raymond, Yang, Chin-Rang, Chou, Chung-Lin, Raghuram, Viswanathan, Knepper, Mark A.

Source: American Journal of Physiology: Renal Physiology; Oct2024, Vol. 327 Issue 4, pF591-F598, 8p

Subject Terms: EXTRACELLULAR signal-regulated kinases, CYCLIC-AMP-dependent protein kinase, CARRIER proteins, MITOGEN-activated protein kinases, CELL cycle proteins, AQUAPORINS, PROTEIN kinases

RNA-Seq and protein mass spectrometry in microdissected kidney tubules reveal signaling processes initiating lithium-induced nephrogenic diabetes insipidus

Authors: Sung, Chih-Chien, Chen, Lihe, Limbutara, Kavee, Jung, Hyun Jun, Gilmer, Gabrielle G., Yang, Chin-Rang, Lin, Shih-Hua, Khositseth, Sookkasem, Chou, Chung-Lin, Knepper, Mark A.

Source: In Kidney International August 2019 96(2):363-377

Representation and relative abundance of cell-type selective markers in whole-kidney RNA-Seq data

Authors: Clark, Jevin Z., Chen, Lihe, Chou, Chung-Lin, Jung, Hyun Jun, Lee, Jae Wook, Knepper, Mark A.

Source: In Kidney International April 2019 95(4):787-796

Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data

Authors: Saeed, Fahad, Pisitkun, Trairak, Knepper, Mark A., Hoffert, Jason D.

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Computational Engineering, Finance, and Science, Computer Science - Databases, Computer Science - Data Structures and Algorithms, Quantitative Biology - Molecular Networks

Access URL: http://arxiv.org/abs/1104.5510

PKA‐independent vasopressin signaling in renal collecting duct

Authors: Datta, Arnab, Yang, Chin‐Rang, Limbutara, Kavee, Chou, Chung‐Lin, Rinschen, Markus M., Raghuram, Viswanathan, Knepper, Mark A.

Source: FASEB journal. 34(5):6129-6146

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107119014.0x000001&indx=1&recIds=ETOCvdc_100107119014.0x000001

Proteomics and AQP2 regulation.

Authors: Yang, Chin‐Rang, Park, Euijung, Chen, Lihe, Datta, Arnab, Chou, Chung‐Lin, Knepper, Mark A.

Source: Journal of Physiology; Jul2024, Vol. 602 Issue 13, p3011-3023, 13p

Subject Terms: PROTEOMICS, SYSTEMS biology, BIOINFORMATICS, MASS spectrometry, PHOSPHORYLATION

'Aquaporin‐omics': mechanisms of aquaporin‐2 loss in polyuric disorders.

Authors: Mak, Angela, Sung, Chih‐Chien, Pisitkun, Trairak, Khositseth, Sookkasem, Knepper, Mark A.

Source: Journal of Physiology; Jul2024, Vol. 602 Issue 13, p3191-3206, 16p

Subject Terms: AQUAPORINS, ANIMAL models in research, PROTEOMICS, INFLAMMATION, PATHOLOGY