Proteogenomic characterization of pancreatic ductal adenocarcinoma

Authors: Amin, Mitual, An, Eunkyung, Ayad, Christina, Bauer, Thomas, Birger, Chet, Birrer, Michael J., Boca, Simina M., Bocik, William, Borucki, Melissa, Cai, Shuang, Carr, Steven A., Cerda, Sandra, Chen, Huan, Chen, Steven, Chesla, David, Chinnaiyan, Arul M., Colaprico, Antonio, Cottingham, Sandra, Derejska, Magdalena, Dhanasekaran, Saravana M., Domagalski, Marcin J., Druker, Brian J., Duffy, Elizabeth, Dyer, Maureen A., Edwards, Nathan J., Ellis, Matthew J., Eschbacher, Jennifer, Francis, Alicia, Francis, Jesse, Gabriel, Stacey, Gabrovski, Nikolay, Gardner, Johanna, Getz, Gad, Gillette, Michael A., Goldthwaite, Charles A., Jr., Grady, Pamela, Guo, Shuai, Hariharan, Pushpa, Hiltke, Tara, Hindenach, Barbara, Hoadley, Katherine A., Huang, Jasmine, Jones, Corbin D., Ketchum, Karen A., Kinsinger, Christopher R., Koziak, Jennifer M., Kusnierz, Katarzyna, Liu, Tao, Long, Jiang, Mallery, David, Mareedu, Sailaja, Matteotti, Ronald, Maunganidze, Nicollette, McGarvey, Peter B., Minoo, Parham, Paklina, Oxana V., Paulovich, Amanda G., Payne, Samuel H., Potapova, Olga, Pruetz, Barbara, Qi, Liqun, Roche, Nancy, Rodland, Karin D., Rohrer, Daniel C., Schadt, Eric E., Shabunin, Alexey V., Shelton, Troy, Shutack, Yvonne, Singh, Shilpi, Smith, Michael, Smith, Richard D., Sokoll, Lori J., Suh, James, Thangudu, Ratna R., Tsang, Shirley X., Um, Ki Sung, Valley, Dana R., Vatanian, Negin, Wang, Wenyi, Wilson, George D., Wiznerowicz, Maciej, Zhang, Zhen, Zhao, Grace, Cao, Liwei, Huang, Chen, Cui Zhou, Daniel, Hu, Yingwei, Lih, T. Mamie, Savage, Sara R., Krug, Karsten, Clark, David J., Schnaubelt, Michael, Chen, Lijun, da Veiga Leprevost, Felipe, Eguez, Rodrigo Vargas, Yang, Weiming, Pan, Jianbo, Wen, Bo, Dou, Yongchao, Jiang, Wen, Liao, Yuxing, Shi, Zhiao, Terekhanova, Nadezhda V., Cao, Song, Lu, Rita Jui-Hsien, Li, Yize, Liu, Ruiyang, Zhu, Houxiang, Ronning, Peter, Wu, Yige, Wyczalkowski, Matthew A., Easwaran, Hariharan, Danilova, Ludmila, Mer, Arvind Singh, Yoo, Seungyeul, Wang, Joshua M., Liu, Wenke, Haibe-Kains, Benjamin, Thiagarajan, Mathangi, Jewell, Scott D., Hostetter, Galen, Newton, Chelsea J., Li, Qing Kay, Roehrl, Michael H., Fenyö, David, Wang, Pei, Nesvizhskii, Alexey I., Mani, D.R., Omenn, Gilbert S., Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Bathe, Oliver F., Chan, Daniel W., Hruban, Ralph H., Ding, Li, Zhang, Bing, Zhang, Hui

Source: In Cell 16 September 2021 184(19):5031-5052

A proteogenomic portrait of lung squamous cell carcinoma

Authors: Green, Alex, Molinolo, Alfredo, Francis, Alicia, Paulovich, Amanda G., Karnuta, Andrii, Colaprico, Antonio, Hindenach, Barbara, Pruetz, Barbara L., Kubisa, Bartosz, Druker, Brian J., Huynh, Carissa, Goldthwaite, Charles A., Jr., Birger, Chet, Kinsinger, Christopher R., Jones, Corbin D., Rohrer, Dan, Valley, Dana R., Chan, Daniel W., Chesla, David, Hansel, Donna, Ponomareva, Elena V., Duffy, Elizabeth, Burks, Eric, Schadt, Eric E., Fedorov, Eugene S., An, Eunkyung, Ding, Fei, Wilson, George D., Batra, Harsh, Zhang, Hui, Maas, Jennifer E., Eschbacher, Jennifer, Ketchum, Karen A., Rodland, Karin D., Hoadley, Katherine A., Suzuki, Kei, Um, Ki Sung, Qi, Liqun, Bernard, Lori, Wiznerowicz, Maciej, Wojtyś, Małgorzata, Domagalski, Marcin J., Ellis, Matthew J., Dyer, Maureen A., Borucki, Melissa, Anurag, Meenakshi, Birrer, Michael J., Xu, Midie, Krotevich, Mikhail, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Mucci, Neil R., Maunganidze, Nicollette, Gabrovski, Nikolay, Potapova, Olga, Fadare, Oluwole, Grady, Pamela, McGarvey, Peter B., Hariharan, Pushpa, Thangudu, Ratna R., Montgomery, Rebecca, Pandurengan, Renganayaki, Smith, Richard D., Welsh, Robert J., Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Singh, Shilpi, Tsang, Shirley X., Cai, Shuang, Gabriel, Stacey, Liu, Tao, Hiltke, Tara, Vashist, Tanmayi, Bauer, Thomas, Sovenko, Volodymyr, Tourtellotte, Warren G., Ma, Weiping, Bocik, William, Hasan, Wohaib, Jing, Xiaojun, Tang, Ximing, Liao, Yuxing, Yvonne, Shutack, Zhang, Zhen, Hanhan, Ziad, Satpathy, Shankha, Krug, Karsten, Jean Beltran, Pierre M., Savage, Sara R., Petralia, Francesca, Kumar-Sinha, Chandan, Dou, Yongchao, Reva, Boris, Kane, M. Harry, Avanessian, Shayan C., Vasaikar, Suhas V., Krek, Azra, Lei, Jonathan T., Jaehnig, Eric J., Omelchenko, Tatiana, Geffen, Yifat, Bergstrom, Erik J., Stathias, Vasileios, Christianson, Karen E., Heiman, David I., Cieslik, Marcin P., Cao, Song, Song, Xiaoyu, Ji, Jiayi, Liu, Wenke, Li, Kai, Wen, Bo, Li, Yize, Gümüş, Zeynep H., Selvan, Myvizhi Esai, Soundararajan, Rama, Visal, Tanvi H., Raso, Maria G., Parra, Edwin Roger, Babur, Özgün, Vats, Pankaj, Anand, Shankara, Schraink, Tobias, Cornwell, MacIntosh, Rodrigues, Fernanda Martins, Zhu, Houxiang, Mo, Chia-Kuei, Zhang, Yuping, da Veiga Leprevost, Felipe, Huang, Chen, Chinnaiyan, Arul M., Wyczalkowski, Matthew A., Omenn, Gilbert S., Newton, Chelsea J., Schurer, Stephan, Ruggles, Kelly V., Fenyö, David, Jewell, Scott D., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Mani, Sendurai A., Udeshi, Namrata D., Getz, Gad, Suh, James, Li, Qing Kay, Hostetter, Galen, Paik, Paul K., Dhanasekaran, Saravana M., Govindan, Ramaswamy, Ding, Li, Robles, Ana I., Clauser, Karl R., Nesvizhskii, Alexey I., Wang, Pei, Carr, Steven A., Zhang, Bing, Mani, D.R., Gillette, Michael A.

Source: In Cell 5 August 2021 184(16):4348-4371

Proteogenomic and metabolomic characterization of human glioblastoma

Authors: Agarwal, Anupriya, Amin, Mitual, An, Eunkyung, Anderson, Matthew L., Andrews, David W., Bauer, Thomas, Birger, Chet, Birrer, Michael J., Blumenberg, Lili, Bocik, William E., Borate, Uma, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna P., Carr, Steven A., Cerda, Sandra, Chan, Daniel W., Charamut, Alyssa, Chen, Lin S., Chesla, David, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Cieślik, Marcin P., Clark, David J., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Day, Jacob, De Young, Stephanie, Demir, Emek, Dhanasekaran, Saravana Mohan, Dhir, Rajiv, Domagalski, Marcin J., Druker, Brian, Duffy, Elizabeth, Dyer, Maureen, Edwards, Nathan J., Edwards, Robert, Elburn, Kimberly, Ellis, Matthew J., Eschbacher, Jennifer, Francis, Alicia, Gabriel, Stacey, Gabrovski, Nikolay, Garofano, Luciano, Getz, Gad, Gillette, Michael A., Godwin, Andrew K., Golbin, Denis, Hanhan, Ziad, Hannick, Linda I., Hariharan, Pushpa, Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Huang, Chen, Jaehnig, Eric, Jewell, Scott D., Ji, Nan, Jones, Corbin D., Karz, Alcida, Kaspera, Wojciech, Kim, Lyndon, Kothadia, Ramani B., Kumar-Sinha, Chandan, Lei, Jonathan, Leprevost, Felipe D., Li, Kai, Liao, Yuxing, Lilly, Jena, Liu, Hongwei, Lubínski, Jan, Madan, Rashna, Maggio, William, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Markey, Sanford P., Marrero-Oliveras, Annette, Martinez, Nina, Maunganidze, Nicollette, McDermott, Jason E., McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Migliozzi, Simona, Modugno, Francesmary, Montgomery, Rebecca, Newton, Chelsea J., Omenn, Gilbert S., Ozbek, Umut, Paklina, Oxana V., Paulovich, Amanda G., Perou, Amy M., Pico, Alexander R., Piehowski, Paul D., Placantonakis, Dimitris G., Polonskaya, Larisa, Potapova, Olga, Pruetz, Barbara, Qi, Liqun, Ramkissoon, Shakti, Resnick, Adam, Richey, Shannon, Riggins, Gregory, Robinson, Karna, Roche, Nancy, Rohrer, Daniel C., Rood, Brian R., Rossell, Larissa, Savage, Sara R., Schadt, Eric E., Shi, Yan, Shi, Zhiao, Shutack, Yvonne, Singh, Shilpi, Skelly, Tara, Sokoll, Lori J., Stawicki, Jakub, Stein, Stephen E., Suh, James, Szopa, Wojciech, Tabor, Dave, Tan, Donghui, Tansil, Darlene, Thangudu, Ratna R., Tognon, Cristina, Traer, Elie, Tsang, Shirley, Tyner, Jeffrey, Um, Ki Sung, Valley, Dana R., Vasaikar, Suhas, Vatanian, Negin, Velvulou, Uma, Vernon, Michael, Wan, Weiqing, Wang, Junmei, Webster, Alex, Wen, Bo, Whiteaker, Jeffrey R., Wilson, George D., Zakhartsev, Yuriy, Zelt, Robert, Zhang, Hui, Zhang, Liwei, Zhang, Zhen, Zhao, Grace, Zhu, Jun, Wang, Liang-Bo, Karpova, Alla, Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Li, Yize, Rykunov, Dmitry, Colaprico, Antonio, Rothstein, Joseph H., Hong, Runyu, Stathias, Vasileios, Cornwell, MacIntosh, Petralia, Francesca, Wu, Yige, Reva, Boris, Krug, Karsten, Pugliese, Pietro, Kawaler, Emily, Olsen, Lindsey K., Liang, Wen-Wei, Song, Xiaoyu, Dou, Yongchao, Wendl, Michael C., Caravan, Wagma, Liu, Wenke, Cui Zhou, Daniel, Ji, Jiayi, Tsai, Chia-Feng, Petyuk, Vladislav A., Moon, Jamie, Ma, Weiping, Chu, Rosalie K., Weitz, Karl K., Moore, Ronald J., Monroe, Matthew E., Zhao, Rui, Yang, Xiaolu, Yoo, Seungyeul, Krek, Azra, Demopoulos, Alexis, Zhu, Houxiang, Wyczalkowski, Matthew A., McMichael, Joshua F., Henderson, Brittany L., Lindgren, Caleb M., Boekweg, Hannah, Lu, Shuangjia, Baral, Jessika, Yao, Lijun, Stratton, Kelly G., Bramer, Lisa M., Zink, Erika, Couvillion, Sneha P., Bloodsworth, Kent J., Satpathy, Shankha, Sieh, Weiva, Boca, Simina M., Schürer, Stephan, Chen, Feng, Wiznerowicz, Maciej, Ketchum, Karen A., Boja, Emily S., Kinsinger, Christopher R., Robles, Ana I., Hiltke, Tara, Thiagarajan, Mathangi, Nesvizhskii, Alexey I., Zhang, Bing, Mani, D.R., Ceccarelli, Michele, Chen, Xi S., Cottingham, Sandra L., Li, Qing Kay, Kim, Albert H., Fenyö, David, Ruggles, Kelly V., Rodriguez, Henry, Mesri, Mehdi, Payne, Samuel H., Resnick, Adam C., Wang, Pei, Smith, Richard D., Iavarone, Antonio, Chheda, Milan G., Barnholtz-Sloan, Jill S., Rodland, Karin D., Liu, Tao, Ding, Li

Source: In Cancer Cell 12 April 2021 39(4):509-528

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma

Authors: Agarwal, Anupriya, Anderson, Matthew L., Avanessian, Shayan C., Avtonomov, Dmitry, Bathe, Oliver F., Birger, Chet, Birrer, Michael J., Blumenberg, Lili, Bocik, William E., Borate, Uma, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna Pamela, Cerda, Sandra, Charamut, Alyssa, Chen, Lin S., Chowdhury, Shrabanti, Clauser, Karl R., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Day, Jacob, De Young, Stephanie, Demir, Emek, Ding, Fei, Domagalski, Marcin J., Dort, Joseph C., Druker, Brian, Duffy, Elizabeth, Dyer, Maureen, Edwards, Nathan J., Elburn, Kimberly, Ermakova, Tatiana S., Fenyo, David, Ferrarotto, Renata, Francis, Alicia, Gabriel, Stacey, Garofano, Luciano, Geffen, Yifat, Getz, Gad, Goldthwaite, Charles A., Hannick, Linda I., Hariharan, Pushpa, Hayes, David N., Heiman, David, Hindenach, Barbara, Hoadley, Katherine A., Hostetter, Galen, Hyrcza, Martin, Jewell, Scott D., Jones, Corbin D., Kane, M. Harry, Karz, Alicia, Kothadia, Ramani B., Krek, Azra, Kumar-Sinha, Chandan, Liu, Tao, Liu, Hongwei, Ma, Weiping, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Markey, Sanford P., Marrero-Oliveras, Annette, Maunganidze, Nicollette, McDermott, Jason E., McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Migliozzi, Simona, Montgomery, Rebecca, Newton, Chelsea J., Ozbek, Umut, Paulovich, Amanda G., Payne, Samuel H., Pazardzhikliev, Dimitar Dimitrov, Perou, Amy M., Petralia, Francesca, Petrenko, Lyudmila, Piehowski, Paul D., Placantonakis, Dmitris, Polonskaya, Larisa, Ponomareva, Elena V., Potapova, Olga, Qi, Liqun, Qu, Ning, Ramkissoon, Shakti, Reva, Boris, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rodland, Karin, Rohrer, Daniel C., Rykunov, Dmitry, Schadt, Eric E., Shi, Yan, Shutack, Yvonne, Singh, Shilpi, Skelly, Tara, Smith, Richard, Sokoll, Lori J., Stawicki, Jakub, Stein, Stephen E., Suh, James, Szopa, Wojciech, Tabor, Dave, Tan, Donghui, Tansil, Darlene, Teo, Guo Ci, Thangudu, Ratna R., Tognon, Cristina, Traer, Elie, Tsang, Shirley, Tyner, Jeffrey, Um, Ki Sung, Valley, Dana R., Vasilev, Lyubomir Valkov, Vatanian, Negin, Velvulou, Uma, Vernon, Michael, Westbrook, Thomas F., Whiteaker, Jeffrey R., Wu, Yige, Xu, Midie, Yao, Lijun, Yi, Xinpei, Yu, Fengchao, Zaalishvili, Kakhaber, Zakhartsev, Yuriy, Zelt, Robert, Zhao, Grace, Zhu, Jun, Huang, Chen, Chen, Lijun, Savage, Sara R., Eguez, Rodrigo Vargas, Dou, Yongchao, Li, Yize, da Veiga Leprevost, Felipe, Jaehnig, Eric J., Lei, Jonathan T., Wen, Bo, Schnaubelt, Michael, Krug, Karsten, Song, Xiaoyu, Cieślik, Marcin, Chang, Hui-Yin, Wyczalkowski, Matthew A., Li, Kai, Colaprico, Antonio, Li, Qing Kay, Clark, David J., Hu, Yingwei, Cao, Liwei, Pan, Jianbo, Wang, Yuefan, Cho, Kyung-Cho, Shi, Zhiao, Liao, Yuxing, Jiang, Wen, Anurag, Meenakshi, Ji, Jiayi, Yoo, Seungyeul, Zhou, Daniel Cui, Liang, Wen-Wei, Wendl, Michael, Vats, Pankaj, Carr, Steven A., Mani, D.R., Zhang, Zhen, Qian, Jiang, Chen, Xi S., Pico, Alexander R., Wang, Pei, Chinnaiyan, Arul M., Ketchum, Karen A., Kinsinger, Christopher R., Robles, Ana I., An, Eunkyung, Hiltke, Tara, Mesri, Mehdi, Thiagarajan, Mathangi, Weaver, Alissa M., Sikora, Andrew G., Lubiński, Jan, Wierzbicka, Małgorzata, Wiznerowicz, Maciej, Satpathy, Shankha, Gillette, Michael A., Miles, George, Ellis, Matthew J., Omenn, Gilbert S., Rodriguez, Henry, Boja, Emily S., Dhanasekaran, Saravana M., Ding, Li, Nesvizhskii, Alexey I., El-Naggar, Adel K., Chan, Daniel W., Zhang, Hui, Zhang, Bing

Source: In Cancer Cell 8 March 2021 39(3):361-379

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

Authors: Francis, Alicia, Morgan, Allison M., Waanders, Angela J., Viaene, Angela N., Buccoliero, Anna Maria, Chinnaiyan, Arul M., Leonard, Carina A., Kline, Cassie N., Caporalini, Chiara, Kinsinger, Christopher R., Li, Chunde, Kram, David E., Hanson, Derek, Appert, Elizabeth, Kawaler, Emily A., Raabe, Eric H., Jackson, Eric M., Greenfield, Jeffrey P., Stone, Gabrielle S., Getz, Gad, Grant, Gerald, Teo, Guo Ci, Pollack, Ian F., Cain, Jason E., Foster, Jessica B., Phillips, Joanna J., Palma, July E., Ketchum, Karen A., Ruggles, Kelly V., Blumenberg, Lili, Cornwell, Macintosh, Sarmady, Mahdi, Domagalski, Marcin J., Cieślik, Marcin P., Santi, Mariarita, Li, Marilyn M., Ellis, Matthew J., Wyczalkowski, Matthew A., Connors, Meghan, Scagnet, Mirko, Gupta, Nalin, Edwards, Nathan J., Vitanza, Nicholas A., Vaske, Olena M., Becher, Oren, McGarvey, Peter B., Firestein, Ron, Mueller, Sabine, Winebrake, Samuel G., Dhanasekaran, Saravana Mohan, Cai, Shuang, Partap, Sonia, Patton, Tatiana, Le, Toan, Lorentzen, Travis D., Liu, Wenke, Bocik, William E., Petralia, Francesca, Tignor, Nicole, Reva, Boris, Koptyra, Mateusz, Chowdhury, Shrabanti, Rykunov, Dmitry, Krek, Azra, Ma, Weiping, Zhu, Yuankun, Ji, Jiayi, Calinawan, Anna, Whiteaker, Jeffrey R., Colaprico, Antonio, Stathias, Vasileios, Omelchenko, Tatiana, Song, Xiaoyu, Raman, Pichai, Guo, Yiran, Brown, Miguel A., Ivey, Richard G., Szpyt, John, Guha Thakurta, Sanjukta, Gritsenko, Marina A., Weitz, Karl K., Lopez, Gonzalo, Kalayci, Selim, Gümüş, Zeynep H., Yoo, Seungyeul, da Veiga Leprevost, Felipe, Chang, Hui-Yin, Krug, Karsten, Katsnelson, Lizabeth, Wang, Ying, Kennedy, Jacob J., Voytovich, Uliana J., Zhao, Lei, Gaonkar, Krutika S., Ennis, Brian M., Zhang, Bo, Baubet, Valerie, Tauhid, Lamiya, Lilly, Jena V., Mason, Jennifer L., Farrow, Bailey, Young, Nathan, Leary, Sarah, Moon, Jamie, Petyuk, Vladislav A., Nazarian, Javad, Adappa, Nithin D., Palmer, James N., Lober, Robert M., Rivero-Hinojosa, Samuel, Wang, Liang-Bo, Wang, Joshua M., Broberg, Matilda, Chu, Rosalie K., Moore, Ronald J., Monroe, Matthew E., Zhao, Rui, Smith, Richard D., Zhu, Jun, Robles, Ana I., Mesri, Mehdi, Boja, Emily, Hiltke, Tara, Rodriguez, Henry, Zhang, Bing, Schadt, Eric E., Mani, D.R., Ding, Li, Iavarone, Antonio, Wiznerowicz, Maciej, Schürer, Stephan, Chen, Xi S., Heath, Allison P., Rokita, Jo Lynne, Nesvizhskii, Alexey I., Fenyö, David, Rodland, Karin D., Liu, Tao, Gygi, Steven P., Paulovich, Amanda G., Resnick, Adam C., Storm, Phillip B., Rood, Brian R., Wang, Pei

Source: In Cell 23 December 2020 183(7):1962-1985

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

Authors: Avanessian, Shayan C., Cai, Shuang, Chan, Daniel, Chen, Xian, Edwards, Nathan J., Hoofnagle, Andrew N., Kane, M. Harry, Ketchum, Karen A., Kuhn, Eric, Levine, Douglas A., Li, Shunqiang, Liebler, Daniel C., Liu, Tao, Luo, Jingqin, Madhavan, Subha, Maher, Chris, McDermott, Jason E., McGarvey, Peter B., Oberti, Mauricio, Pandey, Akhilesh, Payne, Samuel H., Ransohoff, David F., Rivers, Robert C., Rodland, Karin D., Rudnick, Paul, Sanders, Melinda E., Shaw, Kenna M., Shih, Ie-Ming, Slebos, Robbert J.C., Smith, Richard D., Snyder, Michael, Stein, Stephen E., Tabb, David L., Thangudu, Ratna R., Thomas, Stefani, Wang, Yue, White, Forest M., Whiteaker, Jeffrey R., Whiteley, Gordon A., Zhang, Hui, Zhang, Zhen, Zhao, Yingming, Zhu, Heng, Zimmerman, Lisa J., Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A.

Source: In Cell 25 November 2020 183(5):1436-1456

Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma

Authors: Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Zhang, Bing, Mani, D.R., Liebler, Daniel C., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Shih, Ie-Ming, Bavarva, Jasmin, McDermott, Jason E., Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Ding, Li, Hannick, Linda, Zimmerman, Lisa J., Watson, Mark, Thiagarajan, Mathangi, Ellis, Matthew J.C., Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Smith, Richard D., Rivers, Robert C., Slebos, Robert J.C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Liu, Tao, Chen, Xian, Zhao, Yingming, Wang, Yue, Shi, Zhiao, Hu, Yingwei, Pan, Jianbo, Shah, Punit, Ao, Minghui, Thomas, Stefani N., Liu, Yang, Chen, Lijun, Schnaubelt, Michael, Clark, David J., Rodriguez, Henry, Boja, Emily S., Hiltke, Tara, Kinsinger, Christopher R., Rodland, Karin D., Li, Qing Kay, Qian, Jiang, Zhang, Zhen, Chan, Daniel W., Zhang, Hui

Source: In Cell Reports 20 October 2020 33(3)

Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma

Authors: Webster, Alex, Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Perou, Amy M., Godwin, Andrew K., Karnuta, Andrii, Marrero-Oliveras, Annette, Hindenach, Barbara, Pruetz, Barbara, Kubisa, Bartosz, Druker, Brian J., Birger, Chet, Jones, Corbin D., Valley, Dana R., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Rykunov, Dmitry, Tan, Donghui, Ponomareva, Elena V., Duffy, Elizabeth, Burks, Eric J., Schadt, Eric E., Bergstrom, Erik J., Fedorov, Eugene S., Malc, Ewa, Wilson, George D., Chen, Hai-Quan, Krzystek, Halina M., Liu, Hongwei, Culpepper, Houston, Sun, Hua, Zhang, Hui, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, McGee, John, Ketchum, Karen A., Rodland, Karin D., Robinson, Karna, Hoadley, Katherine A., Suzuki, Kei, Um, Ki Sung, Elburn, Kim, Wang, Liang-Bo, Chen, Lijun, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Gritsenko, Marina A., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Sun, Meng-Hong, Roehrl, Michael H., Birrer, Michael J., Noble, Michael, Schnaubelt, Michael, Vernon, Michael, Chaikin, Michelle, Krotevich, Mikhail, Khan, Munziba, Selvan, Myvizhi Esai, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Potapova, Olga, Grady, Pamela, McGarvey, Peter B., Mieczkowski, Piotr, Hariharan, Pushpa, Madan, Rashna, Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Markey, Sanford P., Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Carter, Sonya, Gabriel, Stacey, De Young, Stephanie, Stein, Stephen E., Shankar, Sunita, Krubit, Tanya, Liu, Tao, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Ozbek, Umut, Petyuk, Vladislav A., Sovenko, Volodymyr, Bocik, William E., Maggio, William W., Chen, Xi, Shi, Yan, Wu, Yige, Hu, Yingwei, Liao, Yuxing, Zhang, Zhen, Shi, Zhiao, Gillette, Michael A., Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Krug, Karsten, Petralia, Francesca, Li, Yize, Liang, Wen-Wei, Reva, Boris, Krek, Azra, Ji, Jiayi, Song, Xiaoyu, Liu, Wenke, Hong, Runyu, Yao, Lijun, Blumenberg, Lili, Savage, Sara R., Wendl, Michael C., Wen, Bo, Li, Kai, Tang, Lauren C., MacMullan, Melanie A., Avanessian, Shayan C., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Kothadia, Ramani B., Ma, Weiping, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Kawaler, Emily A., Omelchenko, Tatiana, Colaprico, Antonio, Geffen, Yifat, Maruvka, Yosef E., da Veiga Leprevost, Felipe, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Heiman, David I., Wyczalkowski, Matthew A., Hiltke, Tara, Mesri, Mehdi, Kinsinger, Christopher R., Boja, Emily S., Omenn, Gilbert S., Chinnaiyan, Arul M., Rodriguez, Henry, Li, Qing Kay, Jewell, Scott D., Thiagarajan, Mathangi, Getz, Gad, Zhang, Bing, Fenyö, David, Ruggles, Kelly V., Cieslik, Marcin P., Robles, Ana I., Clauser, Karl R., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., Carr, Steven A.

Source: In Cell 9 July 2020 182(1):200-225

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

Authors: McDermott, Jason E., Arshad, Osama A., Petyuk, Vladislav A., Fu, Yi, Gritsenko, Marina A., Clauss, Therese R., Moore, Ronald J., Schepmoes, Athena A., Zhao, Rui, Monroe, Matthew E., Schnaubelt, Michael, Tsai, Chia-Feng, Payne, Samuel H., Huang, Chen, Wang, Liang-Bo, Foltz, Steven, Wyczalkowski, Matthew, Wu, Yige, Song, Ehwang, Brewer, Molly A., Thiagarajan, Mathangi, Kinsinger, Christopher R., Robles, Ana I., Boja, Emily S., Rodriguez, Henry, Chan, Daniel W., Zhang, Bing, Zhang, Zhen, Ding, Li, Smith, Richard D., Liu, Tao, Rodland, Karin D.

Source: In Cell Reports Medicine 21 April 2020 1(1)

Proteogenomic Characterization of Endometrial Carcinoma

Authors: Agarwal, Anupriya, Anurag, Meenakshi, Avtonomov, Dmitry, Birger, Chet, Birrer, Michael J., Boca, Simina M., Bocik, William E., Borate, Uma, Borucki, Melissa, Burke, Meghan C., Cai, Shuang, Calinawan, Anna, Carr, Steven A., Carter, Sonya, Castro, Patricia, Cerda, Sandra, Chaikin, Michelle, Chan, Daniel W., Chan, Doug, Charamut, Alyssa, Chen, Feng, Chen, Jin, Chen, Lijun, Chen, Lin S., Chesla, David, Chheda, Milan G., Chinnaiyan, Arul M., Chowdhury, Shrabanti, Cieslik, Marcin P., Clark, David J., Cottingham, Sandra, Culpepper, Houston, Day, Jacob, De Young, Stephanie, Demir, Emek, Dhanasekaran, Saravana Mohan, Dhir, Rajiv, Domagalski, Marcin J., Dottino, Peter, Druker, Brian, Duffy, Elizabeth, Dyer, Maureen, Edwards, Nathan J., Edwards, Robert, Elburn, Kim, Field, Jayson B., Francis, Alicia, Gabriel, Stacey, Geffen, Yifat, Geiszler, Daniel, Gillette, Michael A., Godwin, Andrew K., Grady, Pamela, Hannick, Linda, Hariharan, Pushpa, Hilsenbeck, Sue, Hindenach, Barbara, Hoadley, Katherine A., Hong, Runyu, Hostetter, Galen, Hsieh, James J., Hu, Yingwei, Ittmann, Michael M., Jaehnig, Eric, Jewell, Scott D., Ji, Jiayi, Jones, Corbin D., Karabon, Renee, Ketchum, Karen A., Khan, Munziba, Kim, Beom-Jun, Krek, Azra, Krubit, Tanya, Kumar-Sinha, Chandan, Leprevost, Felipe D., Lewis, Michael, Li, Qing Kay, Li, Yize, Liu, Hongwei, Lubinski, Jan, Ma, Weiping, Madan, Rashna, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Markey, Sanford P., Marrero-Oliveras, Annette, Martignetti, John, McDermott, Jason, McGarvey, Peter B., McGee, John, Mieczkowski, Piotr, Modugno, Francesmary, Montgomery, Rebecca, Newton, Chelsea J., Omenn, Gilbert S., Paulovich, Amanda G., Perou, Amy M., Petralia, Francesca, Piehowski, Paul, Polonskaya, Larisa, Qi, Liqun, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rohrer, Daniel C., Schadt, Eric E., Schnaubelt, Michael, Shi, Yan, Skelly, Tara, Sokoll, Lori J., Song, Xiaoyu, Stein, Stephen E., Suh, James, Tan, Donghui, Tansil, Darlene, Teo, Guo Ci, Thangudu, Ratna R., Tognon, Cristina, Traer, Elie, Tyner, Jeffrey, Um, Ki Sung, Valley, Dana R., Vatanian, Negin, Vats, Pankaj, Velvulou, Uma, Vernon, Michael, Wang, Liang-Bo, Wang, Ying, Webster, Alex, Westbrook, Thomas, Wheeler, David, Whiteaker, Jeffrey R., Wilson, George D., Zakhartsev, Yuriy, Zelt, Robert, Zhang, Hui, Zhang, Yuping, Zhang, Zhen, Zhao, Grace, Dou, Yongchao, Kawaler, Emily A., Cui Zhou, Daniel, Gritsenko, Marina A., Huang, Chen, Blumenberg, Lili, Karpova, Alla, Petyuk, Vladislav A., Savage, Sara R., Satpathy, Shankha, Liu, Wenke, Wu, Yige, Tsai, Chia-Feng, Wen, Bo, Li, Zhi, Cao, Song, Moon, Jamie, Shi, Zhiao, Cornwell, MacIntosh, Wyczalkowski, Matthew A., Chu, Rosalie K., Vasaikar, Suhas, Zhou, Hua, Gao, Qingsong, Moore, Ronald J., Li, Kai, Sethuraman, Sunantha, Monroe, Matthew E., Zhao, Rui, Heiman, David, Krug, Karsten, Clauser, Karl, Kothadia, Ramani, Maruvka, Yosef, Pico, Alexander R., Oliphant, Amanda E., Hoskins, Emily L., Pugh, Samuel L., Beecroft, Sean J.I., Adams, David W., Jarman, Jonathan C., Kong, Andy, Chang, Hui-Yin, Reva, Boris, Liao, Yuxing, Rykunov, Dmitry, Colaprico, Antonio, Chen, Xi Steven, Czekański, Andrzej, Jędryka, Marcin, Matkowski, Rafał, Wiznerowicz, Maciej, Hiltke, Tara, Boja, Emily, Kinsinger, Christopher R., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Mutch, David, Fuh, Katherine, Ellis, Matthew J., DeLair, Deborah, Thiagarajan, Mathangi, Mani, D.R., Getz, Gad, Noble, Michael, Nesvizhskii, Alexey I., Wang, Pei, Anderson, Matthew L., Levine, Douglas A., Smith, Richard D., Payne, Samuel H., Ruggles, Kelly V., Rodland, Karin D., Ding, Li, Zhang, Bing, Liu, Tao, Fenyö, David

Source: In Cell 20 February 2020 180(4):729-748

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma

Authors: Hashimi, Abdul Samad, Pico, Alexander R., Karpova, Alla, Charamut, Alyssa, Paulovich, Amanda G., Perou, Amy M., Malovannaya, Anna, Marrero-Oliveras, Annette, Agarwal, Anupriya, Hindenach, Barbara, Pruetz, Barbara, Kim, Beom-Jun, Druker, Brian J., Newton, Chelsea J., Birger, Chet, Jones, Corbin D., Tognon, Cristina, Mani, D.R., Valley, Dana R., Rohrer, Daniel C., Zhou, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Tan, Donghui, Chan, Doug, Demir, Emek, Malc, Ewa, Modugno, Francesmary, Getz, Gaddy, Hostetter, Galen, Wilson, George D., Hart, Gerald W., Zhu, Heng, Liu, Hongwei, Culpepper, Houston, Sun, Hua, Zhou, Hua, Day, Jacob, Suh, James, Huang, Jasmine, McDermott, Jason, Whiteaker, Jeffrey R., Tyner, Jeffrey W., Eschbacher, Jennifer, Chen, Jin, McGee, John, Zhu, Jun, Ketchum, Karen A., Rodland, Karin D., Clauser, Karl, Robinson, Karna, Krug, Karsten, Hoadley, Katherine A., Um, Ki Sung, Elburn, Kim, Holloway, Kimberly, Wang, Liang-Bo, Blumenberg, Lili, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Domagalski, Marcin J., Gritsenko, Marina A., Anderson, Matthew, Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Anurag, Meenakshi, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Lewis, Michael, Ittmann, Michael M., Smith, Michael, Vernon, Michael, Chaikin, Michelle, Chheda, Milan G., Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Beckmann, Noam, Grady, Pamela, Castro, Patricia, Piehowski, Paul, McGarvey, Peter B., Mieczkowski, Piotr, Hariharan, Pushpa, Gao, Qingsong, Dhir, Rajiv, Kothadia, Ramani Bhupendra, Thangudu, Ratna R., Montgomery, Rebecca, Jayasinghe, Reyka G., Smith, Richard D., Edwards, Robert, Zelt, Robert, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Markey, Sanford P., Jewell, Scott D., Patel, Shalin, Satpathy, Shankha, Richey, Shannon, Davies, Sherri R., Cai, Shuang, Boca, Simina M., Patil, Snehal, Sengupta, Sohini, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., De Young, Stephanie, Stein, Stephen E., Carr, Steven A., Foltz, Steven M., Hilsenbeck, Sue, Krubit, Tanya, Liu, Tao, Skelly, Tara, Westbrook, Thomas, Borate, Uma, Velvulou, Uma, Petyuk, Vladislav A., Bocik, William E., Chen, Xi, Shi, Yan, Geffen, Yifat, Lu, Yihao, Wang, Ying, Maruvka, Yosef, Li, Zhi, Shi, Zhiao, Tu, Zhidong, Clark, David J., Dhanasekaran, Saravana M., Petralia, Francesca, Pan, Jianbo, Song, Xiaoyu, Hu, Yingwei, da Veiga Leprevost, Felipe, Reva, Boris, Lih, Tung-Shing M., Chang, Hui-Yin, Ma, Weiping, Huang, Chen, Ricketts, Christopher J., Chen, Lijun, Krek, Azra, Li, Yize, Rykunov, Dmitry, Li, Qing Kay, Chen, Lin S., Ozbek, Umut, Vasaikar, Suhas, Wu, Yige, Yoo, Seungyeul, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Ji, Jiayi, Schnaubelt, Michael, Kong, Andy, Sethuraman, Sunantha, Avtonomov, Dmitry M., Ao, Minghui, Colaprico, Antonio, Cao, Song, Cho, Kyung-Cho, Kalayci, Selim, Ma, Shiyong, Liu, Wenke, Ruggles, Kelly, Calinawan, Anna, Gümüş, Zeynep H., Geiszler, Daniel, Kawaler, Emily, Teo, Guo Ci, Wen, Bo, Zhang, Yuping, Keegan, Sarah, Li, Kai, Chen, Feng, Edwards, Nathan, Pierorazio, Phillip M., Chen, Xi Steven, Pavlovich, Christian P., Hakimi, A. Ari, Brominski, Gabriel, Hsieh, James J., Antczak, Andrzej, Omelchenko, Tatiana, Lubinski, Jan, Wiznerowicz, Maciej, Linehan, W. Marston, Kinsinger, Christopher R., Thiagarajan, Mathangi, Boja, Emily S., Mesri, Mehdi, Hiltke, Tara, Robles, Ana I., Rodriguez, Henry, Qian, Jiang, Fenyö, David, Zhang, Bing, Ding, Li, Schadt, Eric, Chinnaiyan, Arul M., Zhang, Zhen, Omenn, Gilbert S., Cieslik, Marcin, Chan, Daniel W., Nesvizhskii, Alexey I., Wang, Pei, Zhang, Hui

Source: In Cell 31 October 2019 179(4):964-983

Regulated Phosphosignaling Associated with Breast Cancer Subtypes and Druggability*[S]

Authors: Huang, Kuan-lin ^{‡, §, ¶, ‖‖‖‖}, Wu, Yige ^{**, ‡‡}, Primeau, Tina ^‡‡, Wang, Yi-Ting ^§§§, Gao, Yuqian ^§§§, McMichael, Joshua F. ^**, Scott, Adam D. ^{**‡, ‡‡}, Cao, Song ^{**, ‡‡}, Wendl, Michael C. ^{‡‡, §§, ¶¶}, Johnson, Kimberly J. ^{‖‖, ‡‡‡}, Ruggles, Kelly ^¶¶¶, Held, Jason ^{**, ‖‖}, Payne, Samuel H. ^§§§, Davies, Sherri ^{**, ‖‖}, Dar, Arvin ^‖, Kinsinger, Christopher R. ^‖‖‖, Mesri, Mehdi ^‖‖‖, Rodriguez, Henry ^‖‖‖, Ellis, Matthew J. ^‡‡‡‡, Townsend, R. Reid ^{**, ‖‖}, Chen, Feng ^{**‖, ‖‖}, Fenyö, David ^¶¶, Li, Shunqiang ^{**, ‖‖}, Liu, Tao ^‡‡, Carr, Steven A. ^§§§§, Ding, Li ^{**, §§, ‖‖, ¶¶¶¶}

Source: In Molecular & Cellular Proteomics August 2019 18(8):1630-1650

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

Authors: Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Mani, D.R., Chan, Daniel W., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Boja, Emily S., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Zhang, Hui, Shih, Ie-Ming, Bavarva, Jasmin, Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Hannick, Linda, Watson, Mark, Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Rivers, Robert C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Hiltke, Tara, Chen, Xian, Zhao, Yingming, Wang, Yue, Zhang, Zhen, Vasaikar, Suhas, Huang, Chen, Wang, Xiaojing, Petyuk, Vladislav A., Savage, Sara R., Wen, Bo, Dou, Yongchao, Zhang, Yun, Shi, Zhiao, Arshad, Osama A., Gritsenko, Marina A., Zimmerman, Lisa J., McDermott, Jason E., Clauss, Therese R., Moore, Ronald J., Zhao, Rui, Monroe, Matthew E., Wang, Yi-Ting, Chambers, Matthew C., Slebos, Robbert J.C., Lau, Ken S., Mo, Qianxing, Ding, Li, Ellis, Matthew, Thiagarajan, Mathangi, Kinsinger, Christopher R., Rodriguez, Henry, Smith, Richard D., Rodland, Karin D., Liebler, Daniel C., Liu, Tao, Zhang, Bing

Source: In Cell 2 May 2019 177(4):1035-1049

Challenges and opportunities in the proteomic characterization of clear cell renal cell carcinoma (ccRCC): A critical step towards the personalized care of renal cancers

Authors: Li, Qing Kay, Pavlovich, Christian P., Zhang, Hui, Kinsinger, Christopher R., Chan, Daniel W.

Source: In Seminars in Cancer Biology April 2019 55:8-15

Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction

Authors: Wang, Jing ^{‡, §, ¶}, Ma, Zihao ^‡, Carr, Steven A. ^‖, Mertins, Philipp ^‖, Zhang, Hui ^**, Zhang, Zhen ^**, Chan, Daniel W. ^**, Ellis, Matthew J.C. ^{§, ‡‡}, Townsend, R. Reid ^§§, Smith, Richard D. ^¶¶, McDermott, Jason E. ^¶¶, Chen, Xian ^‖‖, Paulovich, Amanda G., Boja, Emily S., Mesri, Mehdi, Kinsinger, Christopher R., Rodriguez, Henry, Rodland, Karin D. ^¶¶, Liebler, Daniel C., Zhang, Bing ^{‡, §, ¶}

Source: In Molecular & Cellular Proteomics January 2017 16(1):121-134

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Authors: Carr, Steven A., Gillette, Michael A., Klauser, Karl R., Kuhn, Eric, Mani, D.R., Mertins, Philipp, Ketchum, Karen A., Thangudu, Ratna, Cai, Shuang, Oberti, Mauricio, Paulovich, Amanda G., Whiteaker, Jeffrey R., Edwards, Nathan J., McGarvey, Peter B., Madhavan, Subha, Wang, Pei, Chan, Daniel W., Pandey, Akhilesh, Shih, Ie-Ming, Zhang, Hui, Zhang, Zhen, Zhu, Heng, Cope, Leslie, Whiteley, Gordon A., Skates, Steven J., White, Forest M., Levine, Douglas A., Boja, Emily S., Kinsinger, Christopher R., Hiltke, Tara, Mesri, Mehdi, Rivers, Robert C., Rodriguez, Henry, Shaw, Kenna M., Stein, Stephen E., Fenyo, David, Liu, Tao, McDermott, Jason E., Payne, Samuel H., Rodland, Karin D., Smith, Richard D., Rudnick, Paul, Snyder, Michael, Zhao, Yingming, Chen, Xian, Ransohoff, David F., Hoofnagle, Andrew N., Liebler, Daniel C., Sanders, Melinda E., Shi, Zhiao, Slebos, Robbert J.C., Tabb, David L., Zhang, Bing, Zimmerman, Lisa J., Wang, Yue, Davies, Sherri R., Ding, Li, Ellis, Matthew J.C., Townsend, R. Reid, Zhang, Bai, Zhou, Jian-Ying, Petyuk, Vladislav A., Chen, Li, Ray, Debjit, Sun, Shisheng, Yang, Feng, Chen, Lijun, Wang, Jing, Shah, Punit, Cha, Seong Won, Aiyetan, Paul, Woo, Sunghee, Tian, Yuan, Gritsenko, Marina A., Clauss, Therese R., Choi, Caitlin, Monroe, Matthew E., Thomas, Stefani, Nie, Song, Wu, Chaochao, Moore, Ronald J., Yu, Kun-Hsing, Fenyö, David, Bafna, Vineet, Sokoll, Lori, Snyder, Michael P.

Source: In Cell 28 July 2016 166(3):755-765

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer

Authors: Ruggles, Kelly V. ^‡, Tang, Zuojian ^‡, Wang, Xuya ^‡, Grover, Himanshu ^‡, Askenazi, Manor ^§, Teubl, Jennifer ^‡, Cao, Song ^¶, McLellan, Michael D. ^¶, Clauser, Karl R. ^‖, Tabb, David L. ^**, Mertins, Philipp ^‖, Slebos, Robbert ^**, Erdmann-Gilmore, Petra ^¶, Li, Shunqiang ^¶, Gunawardena, Harsha P. ^‡‡, Xie, Ling ^‡‡, Liu, Tao ^§§, Zhou, Jian-Ying ^¶¶, Sun, Shisheng ^¶¶, Hoadley, Katherine A. ^‡‡, Perou, Charles M. ^‡‡, Chen, Xian ^‡‡, Davies, Sherri R. ^¶, Maher, Christopher A. ^¶, Kinsinger, Christopher R. ^‖‖, Rodland, Karen D. ^§§, Zhang, Hui ^¶¶, Zhang, Zhen ^¶¶, Ding, Li ^¶, Townsend, R. Reid ^¶, Rodriguez, Henry ^‖‖, Chan, Daniel ^¶¶, Smith, Richard D. ^§§, Liebler, Daniel C. ^**, Carr, Steven A. ^‖, Payne, Samuel ^{§§, ***}, Ellis, Matthew J. ^{¶, ***}, Fenyő, David ^{‡, ***}

Source: In Molecular & Cellular Proteomics March 2016 15(3):1060-1071

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma

Authors: Abbatiello, Susan E. ^‡, Schilling, Birgit ^‡, Mani, D.R. ^‡, Zimmerman, Lisa J., Hall, Steven C., MacLean, Brendan, Albertolle, Matthew, Allen, Simon, Burgess, Michael, Cusack, Michael P., Gosh, Mousumi, Hedrick, Victoria, Held, Jason M., Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kinsinger, Christopher R., Lyssand, John, Makowski, Lee, Mesri, Mehdi, Rodriguez, Henry, Rudnick, Paul, Sadowski, Pawel, Sedransk, Nell, Shaddox, Kent, Skates, Stephen J., Kuhn, Eric ^§, Smith, Derek, Whiteaker, Jeffery R., Whitwell, Corbin, Zhang, Shucha, Borchers, Christoph H., Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel C., MacCoss, Michael J., Neubert, Thomas A., Paulovich, Amanda G., Regnier, Fred E., Tempst, Paul, Carr, Steven A. ^§

Source: In Molecular & Cellular Proteomics September 2015 14(9):2357-2374

A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline

Authors: Rudnick, Paul A., Markey, Sanford P., Roth, Jeri, Mirokhin, Yuri, Yan, Xinjian, Tchekhovskoi, Dmitrii V., Edwards, Nathan J., Thangudu, Ratna R., Ketchum, Karen A., Kinsinger, Christopher R.

Source: Journal of proteome research. 15(3):1023-1032

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN605309505&indx=1&recIds=ETOCRN605309505

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)

Authors: Abbatiello, Susan E. ^‡, Mani, D.R. ^‡, Schilling, Birgit ^§, MacLean, Brendan ^¶, Zimmerman, Lisa J. ^‖, Feng, Xingdong ^**, Cusack, Michael P. ^§, Sedransk, Nell ^**, Hall, Steven C. ^‡‡, Addona, Terri ^‡, Allen, Simon ^‡‡, Dodder, Nathan G. ^§§, Ghosh, Mousumi ^¶¶, Held, Jason M. ^§, Hedrick, Victoria ^‖‖, Inerowicz, H. Dorota ^‖‖, Jackson, Angela, Keshishian, Hasmik ^‡, Kim, Jong Won, Lyssand, John S., Riley, C. Paige ^‖‖, Rudnick, Paul ^§§, Sadowski, Pawel, Shaddox, Kent ^‖, Smith, Derek, Tomazela, Daniela ^¶, Wahlander, Asa, Waldemarson, Sofia, Whitwell, Corbin A. ^‖, You, Jinsam, Zhang, Shucha, Kinsinger, Christopher R., Mesri, Mehdi, Rodriguez, Henry, Borchers, Christoph H., Buck, Charles ^‖‖, Fisher, Susan J. ^‡‡, Gibson, Bradford W. ^§, Liebler, Daniel ^‖, MacCoss, Michael ^¶, Neubert, Thomas A., Paulovich, Amanda, Regnier, Fred ^‖‖, Skates, Steven J., Tempst, Paul ^¶¶, Wang, Mu, Carr, Steven A. ^‡

Source: In Molecular & Cellular Proteomics September 2013 12(9):2623-2639