PNPLA3(148M) is a gain-of-function mutation that promotes hepatic steatosis by inhibiting ATGL-mediated triglyceride hydrolysis

Authors: Wang, Yang ^{1, ⁎, †}, Hong, Sen ^{1, 2, †}, Hudson, Hannah ¹, Kory, Nora ³, Kinch, Lisa N. ^{1, 2}, Kozlitina, Julia ⁴, Cohen, Jonathan C. ^{1, 5}, Hobbs, Helen H. ^{1, 2, 4, ⁎}

Source: In Journal of Hepatology October 2024

Co-component signal transduction systems : Fast-evolving virulence regulation cassettes discovered in enteric bacteria

Authors: Kinch, Lisa N., Cong, Qian, Jaishankar, Jananee, Orth, Kim

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Jun . 119(24), 1-11.

Access URL: https://www.jstor.org/stable/27152107

Structural Differences between Proteins with Similar Sequences

Authors: Cong, Qian, Kim, Bong-Hyun, Kinch, Lisa N., Grishin, Nick V.

Source: 2010 IEEE International Conference on BioInformatics and BioEngineering BioInformatics and BioEngineering (BIBE), 2010 IEEE International Conference on. :250-256 May, 2010

Relation: 2010 International Conference on BioInformatics and BioEngineering (BIBE)

A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit

Authors: Medvedev, Kirill E., Kinch, Lisa N., Dustin Schaeffer, R., Pei, Jimin, Grishin, Nick V.

Source: In Journal of Molecular Biology 19 February 2021 433(4)

Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14)

Authors: Kinch, Lisa N., Schaeffer, R. Dustin, Kryshtafovych, Andriy, Grishin, Nick V.

Source: Proteins. 89(12):1618-1632

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134836054.0x000001&indx=1&recIds=ETOCvdc_100134836054.0x000001

Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14)

Authors: Kinch, Lisa N., Pei, Jimin, Kryshtafovych, Andriy, Schaeffer, R. Dustin, Grishin, Nick V.

Source: Proteins. 89(12):1673-1686

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134836022.0x000001&indx=1&recIds=ETOCvdc_100134836022.0x000001

Genomics Reveals the Origins of Historical Specimens

Authors: Cong, Qian, Shen, Jinhui, Zhang, Jing, Li, Wenlin, Kinch, Lisa N, Calhoun, John V, Warren, Andrew D, Grishin, Nick V

Source: Molecular biology and evolution. 38(5):2166-2176

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100144641560.0x000001&indx=1&recIds=ETOCvdc_100144641560.0x000001

Computational analysis of propeptide‐containing proteins and prediction of their post‐cleavage conformation changes.

Authors: Pei, Jimin, Kinch, Lisa N., Cong, Qian

Source: Proteins; Oct2024, Vol. 92 Issue 10, p1206-1219, 14p

Schnyder corneal dystrophy-associated UBIAD1 is defective in MK-4 synthesis and resists autophagy-mediated degradation

Authors: Jun, Dong-Jae ^*, Schumacher, Marc M. ^*, Hwang, Seonghwan ^*, Kinch, Lisa N. ^†, Grishin, Nick V. ^{†, §}, DeBose-Boyd, Russell A. ^*

Source: In Journal of Lipid Research May 2020 61(5):746-757

The Legionella effector RavD binds phosphatidylinositol-3-phosphate and helps suppress endolysosomal maturation of the Legionella-containing vacuole

Authors: Pike, Colleen M., Boyer-Andersen, Rebecca, Kinch, Lisa N., Caplan, Jeffrey L., Neunuebel, M. Ramona

Source: In Journal of Biological Chemistry 19 April 2019 294(16):6405-6415

Identification of residues critical for topology inversion of the transmembrane protein TM4SF20 through regulated alternative translocation

Authors: Wang, Jingcheng, Kinch, Lisa N., Denard, Bray, Lee, Ching-En, Esmaeilzadeh Gharehdaghi, Elina, Grishin, Nick, Ye, Jin

Source: In Journal of Biological Chemistry 12 April 2019 294(15):6054-6061

Β‐Strand‐mediated interactions of protein domains

Authors: Bhat, Archana S., Kinch, Lisa N., Grishin, Nick V.

Source: Proteins. 88(11):1513-1527

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100108145654.0x000001&indx=1&recIds=ETOCvdc_100108145654.0x000001

FicD sensitizes cellular response to glucose fluctuations in mouse embryonic fibroblasts.

Authors: Gulen, Burak, Blevins, Aubrie, Kinch, Lisa N., Servage, Kelly A., Stewart, Nathan M., Gray, Hillery F., Casey, Amanda K., Orth, Kim

Source: Proceedings of the National Academy of Sciences of the United States of America; 9/17/2024, Vol. 121 Issue 38, p1-12, 24p

Subject Terms: UNFOLDED protein response, POST-translational modification, MEMBRANE proteins, CELL physiology, PROTEIN domains

Protein AMPylation by an Evolutionarily Conserved Pseudokinase

Authors: Sreelatha, Anju, Yee, Samantha S., Lopez, Victor A., Park, Brenden C., Kinch, Lisa N., Pilch, Sylwia, Servage, Kelly A., Zhang, Junmei, Jiou, Jenny, Karasiewicz-Urbańska, Monika, Łobocka, Małgorzata, Grishin, Nick V., Orth, Kim, Kucharczyk, Roza, Pawłowski, Krzysztof, Tomchick, Diana R., Tagliabracci, Vincent S.

Source: In Cell 18 October 2018 175(3):809-821

FlyXCDB—A Resource for Drosophila Cell Surface and Secreted Proteins and Their Extracellular Domains

Authors: Pei, Jimin, Kinch, Lisa N., Grishin, Nick V.

Source: In Journal of Molecular Biology 14 September 2018 430(18) Part B:3353-3411

Assessing predictions on fitness effects of missense variants in calmodulin

Authors: Zhang, Jing, Kinch, Lisa N., Cong, Qian, Katsonis, Panagiotis, Lichtarge, Olivier, Savojardo, Castrense, Babbi, Giulia, Martelli, Pier Luigi, Capriotti, Emidio, Casadio, Rita, Garg, Aditi, Pal, Debnath, Weile, Jochen, Sun, Song, Verby, Marta, Roth, Frederick P., Grishin, Nick V.

Source: Human mutation. 40(9):1463-1473

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100088915264.0x000001&indx=1&recIds=ETOCvdc_100088915264.0x000001

CASP13 target classification into tertiary structure prediction categories

Authors: Kinch, Lisa N., Kryshtafovych, Andriy, Monastyrskyy, Bohdan, Grishin, Nick V.

Source: Proteins. 87(12):1021-1036

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100092837657.0x000001&indx=1&recIds=ETOCvdc_100092837657.0x000001

Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands.

Authors: Medvedev, Kirill E., Zhang, Jing, Schaeffer, R. Dustin, Kinch, Lisa N., Cong, Qian, Grishin, Nick V.

Source: Scientific Reports; 5/28/2024, Vol. 14 Issue 1, p1-15, 15p

Compact Structure Patterns in Proteins

Authors: Chitturi, Bhadrachalam, Shi, Shuoyong, Kinch, Lisa N., Grishin, Nick V.

Source: In Journal of Molecular Biology 23 October 2016 428(21):4392-4412

HP1BP3, a Chromatin Retention Factor for Co-transcriptional MicroRNA Processing

Authors: Liu, Haoming, Liang, Chunyang, Kollipara, Rahul K., Matsui, Masayuki, Ke, Xiong, Jeong, Byung-Cheon, Wang, Zhiqiang, Yoo, Kyoung Shin, Yadav, Gaya P., Kinch, Lisa N., Grishin, Nicholas V., Nam, Yunsun, Corey, David R., Kittler, Ralf, Liu, Qinghua

Source: In Molecular Cell 4 August 2016 63(3):420-432