APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data

Authors: Naima Ahmed Fahmi, Khandakar Tanvir Ahmed, Jae-Woong Chang, Heba Nassereddeen, Deliang Fan, Jeongsik Yong, Wei Zhang

Source: BMC Bioinformatics, Vol 23, Iss S3, Pp 1-14 (2022)

Subject Terms: Alternative polyadenylation, Transcriptome, RNA-seq, 3′-End-seq, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/73aa49f2544e4f40a4dc1ad28ac37c2c

Network-based drug sensitivity prediction

Authors: Khandakar Tanvir Ahmed, Sunho Park, Qibing Jiang, Yunku Yeu, TaeHyun Hwang, Wei Zhang

Source: BMC Medical Genomics, Vol 13, Iss S11, Pp 1-10 (2020)

Subject Terms: Drug sensitivity prediction, Gene co-expression network, Graph-based neural network, Network-based feature selection, Network embedding, Internal medicine, RC31-1245, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1755-8794

Access URL: https://doaj.org/article/990a238e1d8f40c49c575c144fffbfda