Induction of IGHV3-53 public antibodies with broadly neutralising activity against SARS-CoV-2 including Omicron subvariants in a Delta breakthrough infection case

Authors: Ito, Jumpei, Misawa, Naoko, Plianchaisuk, Arnon, Guo, Ziyi, Hina, Alfredo, Jr., Uriu, Keiya, Usui, Kaoru, Saikruang, Wilaiporn, Lytras, Spyridon, Yoshimura, Ryo, Kawakubo, Shusuke, Nishimura, Luca, Kosugi, Yusuke, Fujita, Shigeru, Chen, Luo, Tolentino, Jarel Elgin M., Pan, Lin, Li, Wenye, Yo, Maximilian Stanley, Horinaka, Kio, Suganami, Mai, Strange, Adam P., Chiba, Mika, Iida, Keiko, Ohsumi, Naomi, Okumura, Kaho, Tanaka, Shiho, Ogawa, Eiko, Yasuda, Kyoko, Fukuda, Tsuki, Osujo, Rina, Fukuhara, Takasuke, Tamura, Tomokazu, Suzuki, Rigel, Suzuki, Saori, Ito, Hayato, Matsuno, Keita, Sawa, Hirofumi, Nao, Naganori, Tanaka, Shinya, Tsuda, Masumi, Wang, Lei, Oda, Yoshikata, Ferdous, Zannatul, Shishido, Kenji, Mizuma, Keita, Kojima, Isshu, Li, Jingshu, Tsubo, Tomoya, Tsujino, Shuhei, Nakagawa, So, Shirakawa, Kotaro, Takaori-Kondo, Akifumi, Nagata, Kayoko, Nomura, Ryosuke, Horisawa, Yoshihito, Tashiro, Yusuke, Kawai, Yugo, Takayama, Kazuo, Hashimoto, Rina, Deguchi, Sayaka, Watanabe, Yukio, Sakamoto, Ayaka, Yasuhara, Naoko, Suzuki, Tateki, Kimura, Kanako, Sasaki, Jiei, Nakajima, Yukari, Yajima, Hisano, Nakata, Yoshitaka, Futatsusako, Hiroki, Irie, Takashi, Kawabata, Ryoko, Tabata, Kaori, Nasser, Hesham, Shimizu, Ryo, Begum, MST Monira, Jonathan, Michael, Mugita, Yuka, Takahashi, Otowa, Ichihara, Kimiko, Motozono, Chihiro, Leong, Sharee, Saito, Akatsuki, Shofa, Maya, Shibatani, Yuki, Nishiuchi, Tomoko, Asakura, Hiroyuki, Zahradnik, Jiri, Andrikopoulos, Prokopios, Padilla-Blanco, Miguel, Konar, Aditi, Kuwata, Takeo, Kaku, Yu, Biswas, Shashwata, Matsumoto, Kaho, Shimizu, Mikiko, Kawanami, Yoko, Uraki, Ryuta, Okazaki, Kyo, Minami, Rumi, Nagasaki, Yoji, Nagashima, Mami, Yoshida, Isao, Sadamasu, Kenji, Yoshimura, Kazuhisa, Ito, Mutsumi, Kiso, Maki, Yamayoshi, Seiya, Imai, Masaki, Ikeda, Terumasa, Sato, Kei, Toyoda, Mako, Ueno, Takamasa, Inoue, Takako, Tanaka, Yasuhito, Kimura, Kanako Tarakado, Hashiguchi, Takao, Sugita, Yukihiko, Noda, Takeshi, Morioka, Hiroshi, Kawaoka, Yoshihiro, Matsushita, Shuzo

Source: In eBioMedicine December 2024 110

Virological characteristics of a SARS-CoV-2-related bat coronavirus, BANAL-20-236

Authors: Sawa, Hirofumi, Mizuma, Keita, Li, Jingshu, Mimura, Yume, Ohari, Yuma, Tsubo, Tomoya, Ferdous, Zannatul, Shishido, Kenji, Mohri, Hiromi, Iida, Miki, Tsujino, Shuhei, Misawa, Naoko, Usui, Kaoru, Saikruang, Wilaiporn, Lytras, Spyridon, Kawakubo, Shusuke, Nishumura, Luca, Mendoza Tolentino, Jarel Elgin, Li, Wenye, Yo, Maximilian Stanley, Horinaka, Kio, Suganami, Mai, Chiba, Mika, Yoshimura, Ryo, Yasuda, Kyoko, Iida, Keiko, Strange, Adam Patrick, Ohsumi, Naomi, Tanaka, Shiho, Ogawa, Eiko, Okumura, Kaho, Fukuda, Tsuki, Osujo, Rina, Yoshida, Isao, Nakagawa, So, Takaori-Kondo, Akifumi, Shirakawa, Kotaro, Nagata, Kayoko, Nomura, Ryosuke, Horisawa, Yoshihito, Tashiro, Yusuke, Kawai, Yugo, Nakata, Yoshitaka, Futatsusako, Hiroki, Sakamoto, Ayaka, Yasuhara, Naoko, Hashiguchi, Takao, Suzuki, Tateki, Kimura, Kanako, Sasaki, Jiei, Nakajima, Yukari, Yajima, Hisano, Irie, Takashi, Kawabata, Ryoko, Sasaki-Tabata, Kaori, Shimizu, Ryo, Monira Begum, M.S.T., Jonathan, Michael, Mugita, Yuka, Leong, Sharee, Takahashi, Otowa, Ichihara, Kimiko, Ueno, Takamasa, Motozono, Chihiro, Toyoda, Mako, Saito, Akatsuki, Kosaka, Anon, Kawano, Miki, Matsubara, Natsumi, Nishiuchi, Tomoko, Zahradnik, Jiri, Andrikopoulos, Prokopios, Padilla-Blanco, Miguel, Konar, Aditi, Fujita, Shigeru, Plianchaisuk, Arnon, Deguchi, Sayaka, Ito, Hayato, Nao, Naganori, Wang, Lei, Nasser, Hesham, Tamura, Tomokazu, Kimura, Izumi, Kashima, Yukie, Suzuki, Rigel, Suzuki, Saori, Kida, Izumi, Tsuda, Masumi, Oda, Yoshitaka, Hashimoto, Rina, Watanabe, Yukio, Uriu, Keiya, Yamasoba, Daichi, Guo, Ziyi, Hinay, Alfredo A., Jr., Kosugi, Yusuke, Chen, Luo, Pan, Lin, Kaku, Yu, Chu, Hin, Donati, Flora, Temmam, Sarah, Eloit, Marc, Yamamoto, Yuki, Nagamoto, Tetsuharu, Asakura, Hiroyuki, Nagashima, Mami, Sadamasu, Kenji, Yoshimura, Kazuhisa, Suzuki, Yutaka, Ito, Jumpei, Ikeda, Terumasa, Tanaka, Shinya, Matsuno, Keita, Fukuhara, Takasuke, Takayama, Kazuo, Sato, Kei

Source: In eBioMedicine June 2024 104

Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road

Authors: Kawakubo, Shusuke, Gao, Fangluan, Li, Shifang, Tan, Zhongyang, Huang, Ying-Kun, Adkar-Purushothama, Charith Raj, Gurikar, Chennappa, Maneechoat, Phoowanarth, Chiemsombat, Pissawan, San Aye, Seint, Furuya, Naruto, Shevchenko, Oleksiy, Špak, Josef, Škorić, Dijana, Ho, Simon Y. W., Ohshima, Kazusato

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Mar . 118(12), 1-10.

Access URL: https://www.jstor.org/stable/27039616

Two mutually exclusive evolutionary scenarios for allexiviruses that overcome host RNA silencing and autophagy by regulating viral CRP expression.

Authors: Kim, Hangil¹ (AUTHOR), Kawakubo, Shusuke¹ (AUTHOR), Takahashi, Haruna¹ (AUTHOR), Masuta, Chikara¹ (AUTHOR) masuta@agr.hokudai.ac.jp

Source: PLoS Pathogens. 6/28/2023, Vol. 18 Issue 6, p1-30. 30p.

Subject Terms: *GENE expression, *AUTOPHAGY, *MIXED infections, *PLANT viruses, *DISEASE resistance of plants, *RNA

The recombinogenic history of turnip mosaic potyvirus reveals its introduction to Japan in the 19th century

Authors: Kawakubo, Shusuke, Tomitaka, Yasuhiro, Tomimura, Kenta, Koga, Ryoko, Matsuoka, Hiroki, Uematsu, Seiji, Yamashita, Kazuo, Ho, Simon Y W, Ohshima, Kazusato

Source: Virus evolution. 8(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100168252991.0x000001&indx=1&recIds=ETOCvdc_100168252991.0x000001

Narcissus Plants: A Melting Pot of Potyviruses.

Authors: Probowati, Wiwit^1,2 (AUTHOR) 20976002@edu.cc.saga-u.ac.jp, Kawakubo, Shusuke¹ (AUTHOR) 20751004@edu.cc.saga-u.ac.jp, Ohshima, Kazusato^1,2 (AUTHOR) ohshimak@cc.saga-u.ac.jp

Source: Viruses (1999-4915). Mar2022, Vol. 14 Issue 3, p582-582. 18p.

Subject Terms: *POTYVIRUSES, *PLANT viruses, *POTTED plants, *GENETIC recombination, *PHYTOPLASMAS, *VIRUS diseases

Geographic Terms: JAPAN

Virological characteristics of the SARS-CoV-2 XEC variant

Authors: Kaku, Yu, Okumura, Kaho, Kawakubo, Shusuke, Uriu, Keiya, Chen, Luo, Kosugi, Yusuke, Uwamino, Yoshifumi, Begum, MST Monira, Leong, Sharee, Ikeda, Terumasa, Sadamasu, Kenji, Asakura, Hiroyuki, Nagashima, Mami, Yoshimura, Kazuhisa, Ito, Jumpei, Sato, Kei

Source: In The Lancet Infectious Diseases December 2024 24(12):e736-e736

Genomic Epidemiology and Evolution of Scallion Mosaic Potyvirus From Asymptomatic Wild Japanese Garlic.

Authors: Ohshima, Kazusato, Kawakubo, Shusuke, Muraoka, Satoshi, Gao, Fangluan, Ishimaru, Kanji, Kayashima, Tomoko, Fukuda, Shinji

Source: Frontiers in Microbiology; 12/8/2021, Vol. 12, p1-13, 13p

Subject Terms: TURNIP mosaic virus, WILD plants, POTYVIRUSES, MOSAIC viruses, PLANTS, GARLIC

Geographic Terms: JAPAN, CHINA

The evolutionary history and global spatio-temporal dynamics of potato virus Y.

Authors: Gao, Fangluan, Kawakubo, Shusuke, Ho, Simon Y W, Ohshima, Kazusato

Source: Virus Evolution; Jul2020, Vol. 6 Issue 2, p1-10, 10p

Subject Terms: BIOLOGICAL evolution, POTATO virus Y, TOBACCO, PHYLOGENY, NUCLEOTIDE sequence