Average Nucleotide Identity and Digital DNA-DNA Hybridization Analysis Following PromethION Nanopore-Based Whole Genome Sequencing Allows for Accurate Prokaryotic Typing

Authors: Nick Versmessen, Marieke Mispelaere, Marjolein Vandekerckhove, Cedric Hermans, Jerina Boelens, Katleen Vranckx, Filip Van Nieuwerburgh, Mario Vaneechoutte, Paco Hulpiau, Piet Cools

Source: Diagnostics, Vol 14, Iss 16, p 1800 (2024)

Subject Terms: Escherichia coli, whole genome sequencing, multi-locus sequence typing, antibiotic resistance, species delineation, average nucleotide identity, Medicine (General), R5-920

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4418/14/16/1800; https://doaj.org/toc/2075-4418

Access URL: https://doaj.org/article/73acf6921a3b400fb8de34ac3161dc25

Substantial Intestinal Microbiota Differences Between Patients With Ulcerative Colitis From Ghana and Denmark

Authors: Hengameh Chloé Mirsepasi-Lauridsen, Katleen Vranckx, Henrik Vedel Nielsen, Lee O’Brien Andersen, Timothy Archampong, Karen Angeliki Krogfelt, Andreas Munk Petersen

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

Subject Terms: ulcerative colitis, prokaryotes/eukaryotes, African diet, Westernized diet, inflammatory bowel disease (IBD), Escherichia coli, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.832500/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/d1d98a2e45eb4b63b412ca4af8c676c4

WGS-Based Prediction and Analysis of Antimicrobial Resistance in Campylobacter jejuni Isolates From Israel

Authors: Assaf Rokney, Lea Valinsky, Katleen Vranckx, Noa Feldman, Vered Agmon, Jacob Moran-Gilad, Miriam Weinberger

Source: Frontiers in Cellular and Infection Microbiology, Vol 10 (2020)

Subject Terms: Campylobacter jejuni, antimicrobial resistance, antimicrobial-susceptibility testing, bioinformatics, whole-genome sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fcimb.2020.00365/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/295507571dac4881a5a974629eff43d5

Genomic Epidemiology of Campylobacter jejuni Transmission in Israel

Authors: Assaf Rokney, Lea Valinsky, Jacob Moran-Gilad, Katleen Vranckx, Vered Agmon, Miriam Weinberger

Source: Frontiers in Microbiology, Vol 9 (2018)

Subject Terms: whole genome sequencing, virulence factors/genetics, Campylobacter jejuni, phylogeny, humans, animals, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2018.02432/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/ac84134f37ea43f0b64c11489fde7555

Low prevalence of human enteropathogenic Yersinia spp. in brown rats (Rattus norvegicus) in Flanders.

Authors: Lieze Oscar Rouffaer, Kristof Baert, Anne-Marie Van den Abeele, Ivo Cox, Gerty Vanantwerpen, Lieven De Zutter, Diederik Strubbe, Katleen Vranckx, Luc Lens, Freddy Haesebrouck, Michel Delmée, Frank Pasmans, An Martel

Source: PLoS ONE, Vol 12, Iss 4, p e0175648 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5389835?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/06a679f6dfee4e169c72953ab2df70d5

The Technical and Biological Reproducibility of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Based Typing: Employment of Bioinformatics in a Multicenter Study.

Authors: Michael Oberle, Nadia Wohlwend, Daniel Jonas, Florian P Maurer, Geraldine Jost, Sarah Tschudin-Sutter, Katleen Vranckx, Adrian Egli

Source: PLoS ONE, Vol 11, Iss 10, p e0164260 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5087883?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/5d970134989f483197b51138f48bb1a1

Use of MALDI-TOF Mass Spectrometry and a Custom Database to Characterize Bacteria Indigenous to a Unique Cave Environment (Kartchner Caverns, AZ, USA)

Authors: Lin Zhang, author¹, Katleen Vranckx, author², Koen Janssens, author², Todd R. Sandrin, author¹

Source: Journal of Visualized Experiments. (95)

Availability: http://www.jove.com/video/52064