In-utero exposure to zidovudine-containing antiretroviral therapy and clonal hematopoiesis in HIV-exposed uninfected newborns

Authors: Lin, Shu-Hong, Wang, Youjin, Hartley, Stephen W., Karyadi, Danielle M., Lee, Olivia W., Zhu, Bin, Zhou, Weiyin, Brown, Derek W., Beilstein-Wedel, Erin, Hazra, Rohan, Kacanek, Deborah, Chadwick, Ellen G., Marsit, Carmen J., Poirier, Miriam C., Brummel, Sean S., Chanock, Stephen J., Engels, Eric A., Machiela, Mitchell J.

Source: AIDS. 35(10):1525-1535

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194698540.0x000001&indx=1&recIds=ETOCvdc_100194698540.0x000001

Inflated expectations: Rare-variant association analysis using public controls.

Authors: Kim, Jung¹ (AUTHOR), Karyadi, Danielle M.¹ (AUTHOR), Hartley, Stephen W.¹ (AUTHOR), Zhu, Bin¹ (AUTHOR), Wang, Mingyi^2,3 (AUTHOR), Wu, Dongjing^2,3 (AUTHOR), Song, Lei¹ (AUTHOR), Armstrong, Gregory T.⁴ (AUTHOR), Bhatia, Smita⁵ (AUTHOR), Robison, Leslie L.⁴ (AUTHOR), Yasui, Yutaka⁴ (AUTHOR), Carter, Brian⁶ (AUTHOR), Sampson, Joshua N.¹ (AUTHOR), Freedman, Neal D.¹ (AUTHOR), Goldstein, Alisa M.¹ (AUTHOR), Mirabello, Lisa¹ (AUTHOR), Chanock, Stephen J.¹ (AUTHOR), Morton, Lindsay M.¹ (AUTHOR), Savage, Sharon A.¹ (AUTHOR), Stewart, Douglas R.¹ (AUTHOR) drstewart@mail.nih.gov

Source: PLoS ONE. 1/25/2023, Vol. 18 Issue 1, p1-13. 13p.

Subject Terms: *FALSE discovery rate, *STATISTICAL significance

Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology

Authors: Plassais, Jocelyn, Kim, Jaemin, Davis, Brian, Karyadi, Danielle, Hogan, Andrew, Harris, Alex, Decker, Brennan, Parker, Heidi, Ostrander, Elaine

Source: Nature communications. 10(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129205712.0x000001&indx=1&recIds=ETOCvdc_100129205712.0x000001

Genomic characterization of cervical lymph node metastases in papillary thyroid carcinoma following the Chornobyl accident.

Authors: Morton, Lindsay M., Lee, Olivia W., Karyadi, Danielle M., Bogdanova, Tetiana I., Stewart, Chip, Hartley, Stephen W., Breeze, Charles E., Schonfeld, Sara J., Cahoon, Elizabeth K., Drozdovitch, Vladimir, Masiuk, Sergii, Chepurny, Mykola, Zurnadzhy, Liudmyla Yu, Dai, Jieqiong, Krznaric, Marko, Yeager, Meredith, Hutchinson, Amy, Hicks, Belynda D., Dagnall, Casey L., Steinberg, Mia K.

Source: Nature Communications; 6/13/2024, Vol. 15 Issue 1, p1-18, 18p

Subject Terms: IODINE isotopes, LYMPHATIC metastasis, PAPILLARY carcinoma, THYROID cancer, GENETIC profile, GENOMICS

ArCH: improving the performance of clonal hematopoiesis variant calling and interpretation.

Authors: Chan, Irenaeus C C¹, Panchot, Alex¹, Schmidt, Evelyn¹, McNulty, Samantha², Wiley, Brian J¹, Liu, Jie¹, Turner, Kimberly¹, Moukarzel, Lea³, Wong, Wendy S W⁴, Tran, Duc¹, Beeler, J Scott¹, Batchi-Bouyou, Armel Landry¹, Machiela, Mitchell J⁴, Karyadi, Danielle M⁴, Krajacich, Benjamin J⁵, Zhao, Junhua⁵, Kruglyak, Semyon⁵, Lajoie, Bryan⁵, Levy, Shawn⁵, Patel, Minal³

Source: Bioinformatics; Apr2024, Vol. 40 Issue 4, p1-10, 10p

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants

Authors: Ioannidis, Nilah M., Rothstein, Joseph H., Pejaver, Vikas, Middha, Sumit, McDonnell, Shannon K., Baheti, Saurabh, Musolf, Anthony, Li, Qing, Holzinger, Emily, Karyadi, Danielle, Cannon-Albright, Lisa A., Teerlink, Craig C., Stanford, Janet L., Isaacs, William B., Xu, Jianfeng, Cooney, Kathleen A., Lange, Ethan M., Schleutker, Johanna, Carpten, John D., Powell, Isaac J., Cussenot, Olivier, Cancel-Tassin, Geraldine, Giles, Graham G., MacInnis, Robert J., Maier, Christiane, Hsieh, Chih-Lin, Wiklund, Fredrik, Catalona, William J., Foulkes, William D., Mandal, Diptasri, Eeles, Rosalind A., Kote-Jarai, Zsofia, Bustamante, Carlos D., Schaid, Daniel J., Hastie, Trevor, Ostrander, Elaine A., Bailey-Wilson, Joan E., Radivojac, Predrag, Thibodeau, Stephen N., Whittemore, Alice S., Sieh, Weiva

Source: In The American Journal of Human Genetics 6 October 2016 99(4):877-885

Biallelic BRCA2 Mutations Shape the Somatic Mutational Landscape of Aggressive Prostate Tumors

Authors: Decker, Brennan, Karyadi, Danielle M., Davis, Brian W., Karlins, Eric, Tillmans, Lori S., Stanford, Janet L., Thibodeau, Stephen N., Ostrander, Elaine A.

Source: In The American Journal of Human Genetics 5 May 2016 98(5):818-829

Polygenic risk scores, radiation treatment exposures and subsequent cancer risk in childhood cancer survivors

Authors: Gibson, Todd M., Karyadi, Danielle M., Hartley, Stephen W., Arnold, Michael A., Berrington de Gonzalez, Amy, Conces, Miriam R., Howell, Rebecca M., Kapoor, Vidushi, Leisenring, Wendy M., Neglia, Joseph P., Sampson, Joshua N., Turcotte, Lucie M., Chanock, Stephen J., Armstrong, Gregory T., Morton, Lindsay M.

Source: Nature Medicine; 20240101, Issue: Preprints p1-9, 9p

Identification and characterization of novel SNPs in CHEK2 in Ashkenazi Jewish men with prostate cancer

Authors: Tischkowitz, Marc D., Yilmaz, Ahmet, Chen, Long Q., Karyadi, Danielle M., Novak, David, Kirchhoff, Tomas, Hamel, Nancy, Tavtigian, Sean V., Kolb, Suzanne, Bismar, Tarek A., Aloyz, Raquel, Nelson, Peter S., Hood, Lee, Narod, Steven A., White, Kirsten A., Ostrander, Elaine A., Isaacs, William B., Offit, Kenneth, Cooney, Kathleen A., Stanford, Janet L., Foulkes, William D.

Source: In Cancer Letters 2008 270(1):173-180

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families

Authors: Bailey-Wilson Joan E, Childs Erica J, Cropp Cheryl D, Schaid Daniel J, Xu Jianfeng, Camp Nicola J, Cannon-Albright Lisa A, Farnham James M, George Asha, Powell Isaac, Carpten John D, Giles Graham G, Hopper John L, Severi Gianluca, English Dallas R, Foulkes William D, Mæhle Lovise, Møller Pål, Eeles Rosalind, Easton Douglas, Guy Michelle, Edwards Steve, Badzioch Michael D, Whittemore Alice S, Oakley-Girvan Ingrid, Hsieh Chih-Lin, Dimitrov Latchezar, Stanford Janet L, Karyadi Danielle M, Deutsch Kerry, McIntosh Laura, Ostrander Elaine A, Wiley Kathleen E, Isaacs Sarah D, Walsh Patrick C, Thibodeau Stephen N, McDonnell Shannon K, Hebbring Scott, Lange Ethan M, Cooney Kathleen A, Tammela Teuvo LJ, Schleutker Johanna, Maier Christiane, Bochum Sylvia, Hoegel Josef, Grönberg Henrik, Wiklund Fredrik, Emanuelsson Monica, Cancel-Tassin Geraldine, Valeri Antoine, Cussenot Olivier, Isaacs William B

Source: BMC Medical Genetics, Vol 13, Iss 1, p 46 (2012)

Subject Terms: Internal medicine, RC31-1245, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2350/13/46; https://doaj.org/toc/1471-2350

Access URL: https://doaj.org/article/ce263c9f82cb4988ac4dd3b4b9593d1c

In-utero exposure to zidovudine-containing antiretroviral therapy and clonal hematopoiesis in HIV-exposed uninfected newborns.

Authors: Shu-Hong Lin, Youjin Wang, Hartley, Stephen W., Karyadi, Danielle M., Lee, Olivia W., Bin Zhu, Weiyin Zhou, Brown, Derek W., Beilstein-Wedel, Erin, Hazra, Rohan, Kacanek, Deborah, Chadwick, Ellen G., Marsit, Carmen J., Poirier, Miriam C., Brummel, Sean S., Chanock, Stephen J., Engels, Eric A., Machiela, Mitchell J., Lin, Shu-Hong, Wang, Youjin

Source: AIDS (02699370); Aug2021, Vol. 35 Issue 10, p1525-1535, 11p

Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in the Childhood Cancer Survivor Study.

Authors: Kim, Jung, Gianferante, Matthew, Karyadi, Danielle M, Hartley, Stephen W, Frone, Megan N, Luo, Wen, Robison, Leslie L, Armstrong, Gregory T, Bhatia, Smita, Dean, Michael, Yeager, Meredith, Zhu, Bin, Song, Lei, Sampson, Joshua N, Yasui, Yutaka, Leisenring, Wendy M, Brodie, Seth A, Andrade, Kelvin C de, Fortes, Fernanda P, Goldstein, Alisa M

Source: JNCI Cancer Spectrum; Apr2021, Vol. 5 Issue 2, p1-9, 9p

Subject Terms: CHILDHOOD cancer, CANCER survivors

Subsequent Neoplasm Risk Associated With Rare Variants in DNA Damage Response and Clinical Radiation Sensitivity Syndrome Genes in the Childhood Cancer Survivor Study.

Authors: Morton, Lindsay M.¹ (AUTHOR) mortonli@mail.nih.gov, Karyadi, Danielle M.¹ (AUTHOR), Hartley, Stephen W.¹ (AUTHOR), Frone, Megan N.¹ (AUTHOR), Sampson, Joshua N.¹ (AUTHOR), Howell, Rebecca M.² (AUTHOR), Neglia, Joseph P.³ (AUTHOR), Arnold, Michael A.^4,5 (AUTHOR), Hicks, Belynda D.^1,6 (AUTHOR), Jones, Kristine^1,6 (AUTHOR), Zhu, Bin^1,6 (AUTHOR), Dagnall, Casey L.^1,6 (AUTHOR), Karlins, Eric^1,6 (AUTHOR), Yeager, Meredith S.^1,6 (AUTHOR), Leisenring, Wendy M.⁷ (AUTHOR), Yasui, Yutaka⁸ (AUTHOR), Turcotte, Lucie M.³ (AUTHOR), Smith, Susan A.² (AUTHOR), Weathers, Rita E.² (AUTHOR), Miller, Jeremy⁹ (AUTHOR)

Source: JCO Precision Oncology. 8/21/2020, Vol. 4, p926-936. 11p.

Subject Terms: *RADIATION injuries, *CHILDHOOD cancer, *CANCER survivors, *DNA damage, *CANCER genes, *RADIATION carcinogenesis, *BASAL cell nevus syndrome

Frequency of Pathogenic Germline Variants in Cancer-Susceptibility Genes in Patients With Osteosarcoma.

Authors: Mirabello, Lisa, Zhu, Bin, Koster, Roelof, Karlins, Eric, Dean, Michael, Yeager, Meredith, Gianferante, Matthew, Spector, Logan G., Morton, Lindsay M., Karyadi, Danielle, Robison, Leslie L., Armstrong, Gregory T., Bhatia, Smita, Song, Lei, Pankratz, Nathan, Pinheiro, Maisa, Gastier-Foster, Julie M., Gorlick, Richard, de Toledo, Silvia Regina Caminada, Petrilli, Antonio S.

Source: JAMA Oncology; May2020, Vol. 6 Issue 5, p724-734, 11p

A Copy Number Variant at the KITLG Locus Likely Confers Risk for Canine Squamous Cell Carcinoma of the Digit.

Authors: Karyadi, Danielle M.¹, Karlins, Eric¹, Decker, Brennan¹, vonHoldt, Bridgett M.^1,2, Carpintero-Ramirez, Gretchen¹, Parker, Heidi G.¹, Wayne, Robert K.², Ostrander, Elaine A.¹ eostrand@mail.nih.gov

Source: PLoS Genetics. Mar2013, Vol. 9 Issue 3, Special section p1-14. 14p. 1 Color Photograph, 2 Diagrams, 4 Charts, 3 Graphs.

Subject Terms: *DOGS, *DOG breeds, *SQUAMOUS cell carcinoma, *LIGANDS (Biochemistry), *CARCINOGENESIS

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.