Design, creation, and use of the Test Us Bank (TUB) COVID-19 sample biorepository

Authors: John Broach, Chad Achenbach, Stephanie Behar, Laurel O’Connor, Seanan Tarrant, Julia Ferranto, Colton Wright, Paul Hartin, Taylor Orwig, Janvi Nanavati, Benedict Kalibala, Kelsey Woods, Bernadette Shaw, Julie Flahive, Bruce Barton, Nathaniel Hafer, Carly Herbert, Nisha Fahey, Laura Gibson, Karl Simin, Timothy Kowalik, Doyle V. Ward, Agha W. Mirza, Robert L. Murphy, Matthew Caputo, Bryan Buchholz, Heidi Fantasia, Ainat Koren, Lisa Marchand, Simisola Oludare, Felix Sogade, Dana Ritland, Cedrice Davis, Allen Grenier, Christi Baron, Ellie Brent, Jennifer Bacani McKenney, Nancy Elder, LeAnn Michaels, Laura Ferrara, Grant Theron, Zaida Palmer, Barcey Levy, Jeanette Daly, Kim Parang, Megan Schmidt, Denis Buxton, William Heetderks, Yukari C. Manabe, Apurv Soni, David McManus

Source: BMC Infectious Diseases, Vol 24, Iss 1, Pp 1-14 (2024)

Subject Terms: Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2334

Access URL: https://doaj.org/article/ff1e72e4bf1a412eae8acec423db74c1

Prognostic heterogeneity and clonal dynamics within distinct subgroups of myelodysplastic syndrome and acute myeloid leukemia with TP53 disruptions

Authors: Shyam A. Patel, Jan Cerny, William K. Gerber, Muthalagu Ramanathan, Asiri Ediriwickrema, Benjamin Tanenbaum, Lloyd Hutchinson, Xiuling Meng, Julie Flahive, Bruce Barton, Andrew J. Gillis‐Smith, Sakiko Suzuki, Salwa Khedr, William Selove, Anne W. Higgins, Patricia M. Miron, Karl Simin, Bruce Woda, Jonathan M. Gerber

Source: eJHaem, Vol 4, Iss 4, Pp 1059-1070 (2023)

Subject Terms: TP53, myelodysplastic syndrome, acute myeloid leukemia, hematopoietic stem cell, clonal dynamics, Diseases of the blood and blood-forming organs, RC633-647.5

File Description: electronic resource

Relation: https://doaj.org/toc/2688-6146

Access URL: https://doaj.org/article/70cf2e830d364cbbb01832a39b543f0d

Targeting the GPI transamidase subunit GPAA1 abrogates the CD24 immune checkpoint in ovarian cancer

Authors: Alok K. Mishra, Tianyi Ye, Shahid Banday, Ritesh P. Thakare, Chinh Tran-To Su, Ngoc N.H. Pham, Amjad Ali, Ankur Kulshreshtha, Shreya Roy Chowdhury, Tessa M. Simone, Kai Hu, Lihua Julie Zhu, Birgit Eisenhaber, Sara K. Deibler, Karl Simin, Paul R. Thompson, Michelle A. Kelliher, Frank Eisenhaber, Sunil K. Malonia, Michael R. Green

Source: Cell Reports, Vol 43, Iss 4, Pp 114041- (2024)

Subject Terms: CP: Cancer, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124724003693; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/51c10ad4e53242b1b570a3e817e3e103

The RADx Tech Test Verification Core and the ACME POCT in the Evaluation of COVID-19 Testing Devices: A Model for Progress and Change

Authors: Eric Nehl, Stacy Heilman, David Ku, David Gottfried, Sarah Farmer, Robert Mannino, Erika Tyburski, Julie Sullivan, Allison Suessmith, Leda Bassit, Janet Figueroa, Anna Wood, Traci Leong, Anuradha Rao, Beverly Rogers, Robert Jerris, Sunita Park, Mark Gonzalez, Jennifer Frediani, Claudia Morris, Joshua Levy, Nils Schoof, Maud Mavigner, John Roback, Kristen Herzegh, Natia Saakadze, Jess Ingersoll, Narayana Cheedarla, Andrew Neish, Bradley Hanberry, Christopher Porter, Annette Esper, Russell Kempker, Paulina Rebolledo, Pamela McGuinness, Frederick Balagadde, Rebecca Gore, Ainat Koren, Nira Pollock, Eugene Rogers, Karl Simin, Nathaniel Hafer, Mary Ann Picard, Chiara Ghezzi, David McManus, Bryan Buchholz, Christina Rostad, Viviana Claveria, Thanuja Ramachandra, Yun F. Wang, CaDeidre Washington, Cheryl Stone, Mark Griffiths, Ray Schinazi, Ann Chahroudi, Miriam Vos, Oliver Brand, Greg Martin, Wilbur Lam

Source: IEEE Open Journal of Engineering in Medicine and Biology, Vol 2, Pp 142-151 (2021)

Subject Terms: COVID-19, Device Testing, RADx, Computer applications to medicine. Medical informatics, R858-859.7, Medical technology, R855-855.5

File Description: electronic resource

Relation: https://ieeexplore.ieee.org/document/9418534/; https://doaj.org/toc/2644-1276

Access URL: https://doaj.org/article/97dd1f4fe14142b5900fb67b6edd4cb6

COVID-19 Variant Surveillance and Social Determinants in Central Massachusetts: Development Study

Authors: Qiming Shi, Carly Herbert, Doyle V Ward, Karl Simin, Beth A McCormick, Richard T Ellison III, Adrian H Zai

Source: JMIR Formative Research, Vol 6, Iss 6, p e37858 (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://formative.jmir.org/2022/6/e37858; https://doaj.org/toc/2561-326X

Access URL: https://doaj.org/article/f07b10e39d274460a4055732296552c0

Gene expression signature of atypical breast hyperplasia and regulation by SFRP1

Authors: Kelly J. Gregory, Amy L. Roberts, Erin M. Conlon, Jacob A. Mayfield, Mary J. Hagen, Giovanna M. Crisi, Brooke A. Bentley, Jeffrey J. Kane, Grace Makari-Judson, Holly S. Mason, Jun Yu, Lihua Julie Zhu, Karl Simin, Jacob P. S. Johnson, Ashraf Khan, Ben R. Schneider, Sallie S. Schneider, D. Joseph Jerry

Source: Breast Cancer Research, Vol 21, Iss 1, Pp 1-18 (2019)

Subject Terms: Atypical hyperplasia, Breast, Lobular, Ductal, Premalignancy, SFRP1, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13058-019-1157-5; https://doaj.org/toc/1465-542X

Access URL: https://doaj.org/article/14367b64f7854897a6a4e3a757b9c8bf

GLI1 regulates a novel neuropilin‐2/α6β1 integrin based autocrine pathway that contributes to breast cancer initiation

Authors: Hira Lal Goel, Bryan Pursell, Cheng Chang, Leslie M. Shaw, Junhao Mao, Karl Simin, Prashant Kumar, Craig W. Vander Kooi, Leonard D. Shultz, Dale L. Greiner, Jens Henrik Norum, Rune Toftgard, Charlotte Kuperwasser, Arthur M. Mercurio

Source: EMBO Molecular Medicine, Vol 5, Iss 4, Pp 488-508 (2013)

Subject Terms: breast cancer, GLI1, integrin, neuropilin‐2, stem cells, Medicine (General), R5-920, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1757-4676; https://doaj.org/toc/1757-4684

Access URL: https://doaj.org/article/5c5c12d73f9b40ce892c14ae1500217b

Cooperativity of Rb, Brca1, and p53 in malignant breast cancer evolution.

Authors: Prashant Kumar, Malini Mukherjee, Jacob P S Johnson, Milan Patel, Bing Huey, Donna G Albertson, Karl Simin

Source: PLoS Genetics, Vol 8, Iss 11, p e1003027 (2012)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3500050?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/42087c78485c4195b3ae59a180aa529d

Evidence for phenotypic plasticity in aggressive triple-negative breast cancer: human biology is recapitulated by a novel model system.

Authors: Nicholas C D'Amato, Julie H Ostrander, Michelle L Bowie, Christopher Sistrunk, Alexander Borowsky, Robert D Cardiff, Katie Bell, Lawrence J T Young, Karl Simin, Robin E Bachelder, Jeff Delrow, Alyssa Dawson, Lisa D Yee, Krzysztof Mrózek, Timothy M Clay, Takuya Osada, Victoria L Seewaldt

Source: PLoS ONE, Vol 7, Iss 9, p e45684 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3458110?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/851bb86df4c040e8816ffbdefa873b77

The BRG1 chromatin remodeler protects against ovarian cysts, uterine tumors, and mammary tumors in a lineage-specific manner.

Authors: Daniel W Serber, Allison Rogala, Maisam Makarem, Gary B Rosson, Karl Simin, Virginia Godfrey, Terry Van Dyke, Connie J Eaves, Scott J Bultman

Source: PLoS ONE, Vol 7, Iss 2, p e31346 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3283619?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/489315340d2f4253a20c5efede80de1c

pRb inactivation in mammary cells reveals common mechanisms for tumor initiation and progression in divergent epithelia.

Authors: Karl Simin, Hua Wu, Lucy Lu, Dan Pinkel, Donna Albertson, Robert D Cardiff, Terry Van Dyke

Source: PLoS Biology, Vol 2, Iss 2, p E22 (2004)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/368c23be1c4140f3adfd3d880e397868