Enhancing Drug Discovery: Quantum Machine Learning for QSAR Prediction with Incomplete Data

Authors: Chiang, Wei-Yin, Kao, Po-Yu, Yeh, Tzu-Lan, Yang, Ya-Chu, Lin, Yen-Chu, Zhavoronkov, Alex

Subject Terms: Quantum Physics

Access URL: http://arxiv.org/abs/2501.13395

Toward Drug-Target Interaction Prediction via Ensemble Modeling and Transfer Learning

Authors: Kao, Po-Yu, Kao, Shu-Min, Huang, Nan-Lan, Lin, Yen-Chu

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :2384-2391 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry

Authors: Kao, Po-Yu, Yang, Ya-Chu, Chiang, Wei-Yin, Hsiao, Jen-Yueh, Cao, Yudong, Aliper, Alex, Ren, Feng, Aspuru-Guzik, Alan, Zhavoronkov, Alex, Hsieh, Min-Hsiu, Lin, Yen-Chu

Subject Terms: Quantum Physics

Access URL: http://arxiv.org/abs/2210.16823

Accurate 3D Cell Segmentation Using Deep Features and CRF Refinement

Authors: Jiang, Jiaxiang, Kao, Po-Yu, Belteton, Samuel A., Szymanski, Daniel B., Manjunath, B.S.

Source: 2019 IEEE International Conference on Image Processing (ICIP) Image Processing (ICIP), 2019 IEEE International Conference onhttps://idams.ieee.org/idams/custom/properties/properties.jsp#. :1555-1559 Sep, 2019

Relation: 2019 IEEE International Conference on Image Processing (ICIP)

Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry

Authors: Kao, Po-Yu, Yang, Ya-Chu, Chiang, Wei-Yin, Hsiao, Jen-Yueh, Cao, Yudong, Aliper, Alex, Ren, Feng, Aspuru-Guzik, Alán, Zhavoronkov, Alex, Hsieh, Min-Hsiu

Source: Journal of chemical information and modeling. 63(11):3307-3318

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632990800&indx=1&recIds=ETOCRN632990800

Predicting Clinical Outcome of Stroke Patients with Tractographic Feature

Authors: Kao, Po-Yu, Chen, Jefferson W., Manjunath, B. S.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1907.10419

Improving 3D U-Net for Brain Tumor Segmentation by Utilizing Lesion Prior

Authors: Kao, Po-Yu, Chen, Jefferson W., Manjunath, B. S.

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/1907.00281

Predicting Fluid Intelligence of Children using T1-weighted MR Images and a StackNet

Authors: Kao, Po-Yu, Zhang, Angela, Goebel, Michael, Chen, Jefferson W., Manjunath, B. S.

Subject Terms: Computer Science - Machine Learning, Computer Science - Computer Vision and Pattern Recognition, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1904.07387

Automated Segmentation of CT Scans for Normal Pressure Hydrocephalus

Authors: Zhang, Angela, Kao, Po-Yu, Sahyouni, Ronald, Shelat, Ashutosh, Chen, Jefferson, Manjunath, B. S.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Physics - Medical Physics

Access URL: http://arxiv.org/abs/1901.09088

Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge

Authors: Bakas, Spyridon, Reyes, Mauricio, Jakab, Andras, Bauer, Stefan, Rempfler, Markus, Crimi, Alessandro, Shinohara, Russell Takeshi, Berger, Christoph, Ha, Sung Min, Rozycki, Martin, Prastawa, Marcel, Alberts, Esther, Lipkova, Jana, Freymann, John, Kirby, Justin, Bilello, Michel, Fathallah-Shaykh, Hassan, Wiest, Roland, Kirschke, Jan, Wiestler, Benedikt, Colen, Rivka, Kotrotsou, Aikaterini, Lamontagne, Pamela, Marcus, Daniel, Milchenko, Mikhail, Nazeri, Arash, Weber, Marc-Andre, Mahajan, Abhishek, Baid, Ujjwal, Gerstner, Elizabeth, Kwon, Dongjin, Acharya, Gagan, Agarwal, Manu, Alam, Mahbubul, Albiol, Alberto, Albiol, Antonio, Albiol, Francisco J., Alex, Varghese, Allinson, Nigel, Amorim, Pedro H. A., Amrutkar, Abhijit, Anand, Ganesh, Andermatt, Simon, Arbel, Tal, Arbelaez, Pablo, Avery, Aaron, Azmat, Muneeza, B., Pranjal, Bai, W, Banerjee, Subhashis, Barth, Bill, Batchelder, Thomas, Batmanghelich, Kayhan, Battistella, Enzo, Beers, Andrew, Belyaev, Mikhail, Bendszus, Martin, Benson, Eze, Bernal, Jose, Bharath, Halandur Nagaraja, Biros, George, Bisdas, Sotirios, Brown, James, Cabezas, Mariano, Cao, Shilei, Cardoso, Jorge M., Carver, Eric N, Casamitjana, Adrià, Castillo, Laura Silvana, Catà, Marcel, Cattin, Philippe, Cerigues, Albert, Chagas, Vinicius S., Chandra, Siddhartha, Chang, Yi-Ju, Chang, Shiyu, Chang, Ken, Chazalon, Joseph, Chen, Shengcong, Chen, Wei, Chen, Jefferson W, Chen, Zhaolin, Cheng, Kun, Choudhury, Ahana Roy, Chylla, Roger, Clérigues, Albert, Colleman, Steven, Colmeiro, Ramiro German Rodriguez, Combalia, Marc, Costa, Anthony, Cui, Xiaomeng, Dai, Zhenzhen, Dai, Lutao, Daza, Laura Alexandra, Deutsch, Eric, Ding, Changxing, Dong, Chao, Dong, Shidu, Dudzik, Wojciech, Eaton-Rosen, Zach, Egan, Gary, Escudero, Guilherme, Estienne, Théo, Everson, Richard, Fabrizio, Jonathan, Fan, Yong, Fang, Longwei, Feng, Xue, Ferrante, Enzo, Fidon, Lucas, Fischer, Martin, French, Andrew P., Fridman, Naomi, Fu, Huan, Fuentes, David, Gao, Yaozong, Gates, Evan, Gering, David, Gholami, Amir, Gierke, Willi, Glocker, Ben, Gong, Mingming, González-Villá, Sandra, Grosges, T., Guan, Yuanfang, Guo, Sheng, Gupta, Sudeep, Han, Woo-Sup, Han, Il Song, Harmuth, Konstantin, He, Huiguang, Hernández-Sabaté, Aura, Herrmann, Evelyn, Himthani, Naveen, Hsu, Winston, Hsu, Cheyu, Hu, Xiaojun, Hu, Xiaobin, Hu, Yan, Hu, Yifan, Hua, Rui, Huang, Teng-Yi, Huang, Weilin, Van Huffel, Sabine, Huo, Quan, HV, Vivek, Iftekharuddin, Khan M., Isensee, Fabian, Islam, Mobarakol, Jackson, Aaron S., Jambawalikar, Sachin R., Jesson, Andrew, Jian, Weijian, Jin, Peter, Jose, V Jeya Maria, Jungo, Alain, Kainz, B, Kamnitsas, Konstantinos, Kao, Po-Yu, Karnawat, Ayush, Kellermeier, Thomas, Kermi, Adel, Keutzer, Kurt, Khadir, Mohamed Tarek, Khened, Mahendra, Kickingereder, Philipp, Kim, Geena, King, Nik, Knapp, Haley, Knecht, Urspeter, Kohli, Lisa, Kong, Deren, Kong, Xiangmao, Koppers, Simon, Kori, Avinash, Krishnamurthi, Ganapathy, Krivov, Egor, Kumar, Piyush, Kushibar, Kaisar, Lachinov, Dmitrii, Lambrou, Tryphon, Lee, Joon, Lee, Chengen, Lee, Yuehchou, Lee, M, Lefkovits, Szidonia, Lefkovits, Laszlo, Levitt, James, Li, Tengfei, Li, Hongwei, Li, Wenqi, Li, Hongyang, Li, Xiaochuan, Li, Yuexiang, Li, Heng, Li, Zhenye, Li, Xiaoyu, Li, Zeju, Li, XiaoGang, Lin, Zheng-Shen, Lin, Fengming, Lio, Pietro, Liu, Chang, Liu, Boqiang, Liu, Xiang, Liu, Mingyuan, Liu, Ju, Liu, Luyan, Llado, Xavier, Lopez, Marc Moreno, Lorenzo, Pablo Ribalta, Lu, Zhentai, Luo, Lin, Luo, Zhigang, Ma, Jun, Ma, Kai, Mackie, Thomas, Madabushi, Anant, Mahmoudi, Issam, Maier-Hein, Klaus H., Maji, Pradipta, Mammen, CP, Mang, Andreas, Manjunath, B. S., Marcinkiewicz, Michal, McDonagh, S, McKenna, Stephen, McKinley, Richard, Mehl, Miriam, Mehta, Sachin, Mehta, Raghav, Meier, Raphael, Meinel, Christoph, Merhof, Dorit, Meyer, Craig, Miller, Robert, Mitra, Sushmita, Moiyadi, Aliasgar, Molina-Garcia, David, Monteiro, Miguel A. B., Mrukwa, Grzegorz, Myronenko, Andriy, Nalepa, Jakub, Ngo, Thuyen, Nie, Dong, Ning, Holly, Niu, Chen, Nuechterlein, Nicholas K, Oermann, Eric, Oliveira, Arlindo, Oliveira, Diego D. C., Oliver, Arnau, Osman, Alexander F. I., Ou, Yu-Nian, Ourselin, Sebastien, Paragios, Nikos, Park, Moo Sung, Paschke, Brad, Pauloski, J. Gregory, Pawar, Kamlesh, Pawlowski, Nick, Pei, Linmin, Peng, Suting, Pereira, Silvio M., Perez-Beteta, Julian, Perez-Garcia, Victor M., Pezold, Simon, Pham, Bao, Phophalia, Ashish, Piella, Gemma, Pillai, G. N., Piraud, Marie, Pisov, Maxim, Popli, Anmol, Pound, Michael P., Pourreza, Reza, Prasanna, Prateek, Prkovska, Vesna, Pridmore, Tony P., Puch, Santi, Puybareau, Élodie, Qian, Buyue, Qiao, Xu, Rajchl, Martin, Rane, Swapnil, Rebsamen, Michael, Ren, Hongliang, Ren, Xuhua, Revanuru, Karthik, Rezaei, Mina, Rippel, Oliver, Rivera, Luis Carlos, Robert, Charlotte, Rosen, Bruce, Rueckert, Daniel, Safwan, Mohammed, Salem, Mostafa, Salvi, Joaquim, Sanchez, Irina, Sánchez, Irina, Santos, Heitor M., Sartor, Emmett, Schellingerhout, Dawid, Scheufele, Klaudius, Scott, Matthew R., Scussel, Artur A., Sedlar, Sara, Serrano-Rubio, Juan Pablo, Shah, N. Jon, Shah, Nameetha, Shaikh, Mazhar, Shankar, B. Uma, Shboul, Zeina, Shen, Haipeng, Shen, Dinggang, Shen, Linlin, Shen, Haocheng, Shenoy, Varun, Shi, Feng, Shin, Hyung Eun, Shu, Hai, Sima, Diana, Sinclair, M, Smedby, Orjan, Snyder, James M., Soltaninejad, Mohammadreza, Song, Guidong, Soni, Mehul, Stawiaski, Jean, Subramanian, Shashank, Sun, Li, Sun, Roger, Sun, Jiawei, Sun, Kay, Sun, Yu, Sun, Guoxia, Sun, Shuang, Suter, Yannick R, Szilagyi, Laszlo, Talbar, Sanjay, Tao, Dacheng, Teng, Zhongzhao, Thakur, Siddhesh, Thakur, Meenakshi H, Tharakan, Sameer, Tiwari, Pallavi, Tochon, Guillaume, Tran, Tuan, Tsai, Yuhsiang M., Tseng, Kuan-Lun, Tuan, Tran Anh, Turlapov, Vadim, Tustison, Nicholas, Vakalopoulou, Maria, Valverde, Sergi, Vanguri, Rami, Vasiliev, Evgeny, Ventura, Jonathan, Vera, Luis, Vercauteren, Tom, Verrastro, C. A., Vidyaratne, Lasitha, Vilaplana, Veronica, Vivekanandan, Ajeet, Wang, Guotai, Wang, Qian, Wang, Chiatse J., Wang, Weichung, Wang, Duo, Wang, Ruixuan, Wang, Yuanyuan, Wang, Chunliang, Wen, Ning, Wen, Xin, Weninger, Leon, Wick, Wolfgang, Wu, Shaocheng, Wu, Qiang, Wu, Yihong, Xia, Yong, Xu, Yanwu, Xu, Xiaowen, Xu, Peiyuan, Yang, Tsai-Ling, Yang, Xiaoping, Yang, Hao-Yu, Yang, Junlin, Yang, Haojin, Yang, Guang, Yao, Hongdou, Ye, Xujiong, Yin, Changchang, Young-Moxon, Brett, Yu, Jinhua, Yue, Xiangyu, Zhang, Songtao, Zhang, Angela, Zhang, Kun, Zhang, Xuejie, Zhang, Lichi, Zhang, Xiaoyue, Zhang, Yazhuo, Zhang, Lei, Zhang, Jianguo, Zhang, Xiang, Zhang, Tianhao, Zhao, Sicheng, Zhao, Yu, Zhao, Xiaomei, Zhao, Liang, Zheng, Yefeng, Zhong, Liming, Zhou, Chenhong, Zhou, Xiaobing, Zhou, Fan, Zhu, Hongtu, Zhu, Jin, Zhuge, Ying, Zong, Weiwei, Kalpathy-Cramer, Jayashree, Farahani, Keyvan, Davatzikos, Christos, van Leemput, Koen, Menze, Bjoern

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Computer Science - Machine Learning, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1811.02629

Brain Tumor Segmentation and Tractographic Feature Extraction from Structural MR Images for Overall Survival Prediction

Authors: Kao, Po-Yu, Ngo, Thuyen, Zhang, Angela, Chen, Jefferson W., Manjunath, B. S.

Source: 4th International Workshop, BrainLes 2018, Held in Conjunction with MICCAI 2018

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/1807.07716

Active learning assists chemical intuition identify a scalable conversion of chitin to 3-acetamido-5-acetylfuran.

Authors: Pereira, Juliana G., Ravasco, João M. J. M., Bustillo, Latimah, Marques, Inês S., Kao, Po-Yu, Li, Po-Yi, Lin, Yen-Chu, Rodrigues, Tiago, Bonifácio, Vasco D. B., Peixoto, Andreia F., Afonso, Carlos A. M., Gomes, Rafael F. A.

Source: Green Chemistry; 2/14/2025, Vol. 27 Issue 6, p1740-1746, 7p

Subject Terms: SUSTAINABLE chemistry, BOILING-points, PHARMACEUTICAL industry, CHEMICAL industry, MACHINE learning

Predicting Clinical Outcome of Stroke Patients with Tractographic Feature
5th Brain-lesion (International workshop)

Authors: Kao, Po-Yu, Chen, Jeffereson W., Manjunath, B. S.

Source: Lecture notes in computer science. 11992:32-43

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606166058&indx=1&recIds=ETOCCN606166058

Brain Tumor Segmentation and Tractographic Feature Extraction from Structural MR Images for Overall Survival Prediction
Brain-lesion workshop

Authors: Kao, Po-Yu, Ngo, Thuyen, Zhang, Angela, Chen, Jefferson W., Manjunath, B. S.

Source: Lecture notes in computer science. 11384:128-141

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN604793772&indx=1&recIds=ETOCCN604793772

Unsupervised 3-D Feature Learning for Mild Traumatic Brain Injury
Brainlesion: glioma, multiple sclerosis, stroke and traumatic brain injuries

Authors: Kao, Po-Yu, Rojas, Eduardo, Chen, Jefferson W., Zhang, Angela, Manjunath, B. S.

Source: Lecture notes in computer science. 10154:282-290

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN602351762&indx=1&recIds=ETOCCN602351762

Improving Patch-Based Convolutional Neural Networks for MRI Brain Tumor Segmentation by Leveraging Location Information.

Authors: Kao, Po-Yu, Shailja, Fnu, Jiang, Jiaxiang, Zhang, Angela, Khan, Amil, Chen, Jefferson W., Manjunath, B. S.

Source: Frontiers in Neuroscience; 1/24/2020, Vol. 13, p1-14, 14p

Subject Terms: ARTIFICIAL neural networks, BRAIN tumors, BRAIN damage, MAGNETIC resonance