The Assembled Genome of the Stroke-Prone Spontaneously Hypertensive Rat

Authors: Kalbfleisch, Theodore S., Hussien AbouEl Ela, Nahla A., Li, Kai, Brashear, Wesley A., Kochan, Kelli J., Hillhouse, Andrew E., Zhu, Yaming, Dhande, Isha S., Kline, Eric J., Hudson, Elizabeth A., Murphy, Terence D., Thibaud-Nissen, Françoise, Smith, Melissa L., Doris, Peter A.

Source: Hypertension. 80(1):138-146

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100176793426.0x000001&indx=1&recIds=ETOCvdc_100176793426.0x000001

Enhancing the compatibility of BioCaRGOS silica sol-gel technology with ctDNA extraction and droplet digital PCR (ddPCR) analysisElectronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2ra05862f

Authors: Potnis, Chinmay S., Chauhan, Rajat, Kalbfleisch, Theodore S., Alexander, Evan, Eichhold, Lindsay, Bansal, Meenakshi, Grapperhaus, Craig A., Keynton, Robert S., Linder, Mark W., Gupta, Gautam

Source: RSC advances. 12(45):29399-29404

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163206943.0x000001&indx=1&recIds=ETOCvdc_100163206943.0x000001

Unravelling the potential of disposable and modifiable pencils as catalyst supports for hydrogen evolution reactionElectronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d2nj03359c

Authors: Paudel, Mohan, Daniels, Braydan, Arts, Amanda M., Gupta, Alexander, Kalbfleisch, Theodore, Hofsommer, Dillon T., Grapperhaus, Craig A., Buchanan, Robert M., Gupta, Gautam

Source: New journal of chemistry. 46(39):18832-18838

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100162655947.0x000001&indx=1&recIds=ETOCvdc_100162655947.0x000001

Delineating the Effects of Passaging and Exposure in a Longitudinal Study of Arsenic-Induced Squamous Cell Carcinoma in a HaCaT Cell Line Model

Authors: Banerjee, Mayukh, Al-Eryani, Laila, Srivastava, Sudhir, Rai, Shesh N, Pan, Jianmin, Kalbfleisch, Theodore S, States, J Christopher

Source: Toxicological sciences. 185(2):184-196

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100139686145.0x000001&indx=1&recIds=ETOCvdc_100139686145.0x000001

Parental bias in expression and interaction of genes in the equine placenta

Authors: Dini, Pouya, Kalbfleisch, Theodore, Uribe-Salazar, José M., Carossino, Mariano, Ali, Hossam El-Sheikh, Loux, Shavahn C., Esteller-Vico, Alejandro, Norris, Jamie K., Anand, Lakshay, Scoggin, Kirsten E., Lopez, Carlos M. Rodriguez, Breen, James, Bailey, Ernest, Daels, Peter, Ball, Barry A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Apr . 118(16), 1-12.

Access URL: https://www.jstor.org/stable/27039884

Long term storage of miRNA at room and elevated temperatures in a silica sol–gel matrixElectronic supplementary information (ESI) available. See DOI: 10.1039/d1ra04719a

Authors: Chauhan, Rajat, Kalbfleisch, Theodore S., Potnis, Chinmay S., Bansal, Meenakshi, Linder, Mark W., Keynton, Robert S., Gupta, Gautam

Source: RSC advances. 11(50):31505-31510

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134461626.0x000001&indx=1&recIds=ETOCvdc_100134461626.0x000001

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus

Authors: Heaton, Michael P, Smith, Timothy P L, Bickhart, Derek M, Vander Ley, Brian L, Kuehn, Larry A, Oppenheimer, Jonas, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Rosen, Benjamin D

Source: Journal of heredity. 112(2):184-191

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100121290274.0x000001&indx=1&recIds=ETOCvdc_100121290274.0x000001

A Reference Genome Assembly of American Bison, Bison bison bison

Authors: Oppenheimer, Jonas, Rosen, Benjamin D, Heaton, Michael P, Vander Ley, Brian L, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, Kuehn, Larry A, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Bickhart, Derek M, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Smith, Timothy P L

Source: Journal of heredity. 112(2):174-183

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100121290273.0x000001&indx=1&recIds=ETOCvdc_100121290273.0x000001

Stabilization and solidification of brine water containing selenium, chromium, copper, and mercury utilizing a microwave enabled sol–gel processElectronic supplementary information (ESI) available. See DOI: 10.1039/d1ew00081k

Authors: Kearns, Alex, Bansal, Meenakshi, Kalbfleisch, Theodore, Keller, Aaron, Ellison, Kirk, Chauhan, Rajat, Ghorbanian, Mahyar, Gupta, Gautam

Source: Environmental science.Water research & technology. 7(5):904-912

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100120326923.0x000001&indx=1&recIds=ETOCvdc_100120326923.0x000001

Bio-CaRGOS: capture and release gels for optimized storage of hemoglobinElectronic supplementary information (ESI) available. See DOI: 10.1039/d1ra00987g

Authors: Boylan, Jack, Chauhan, Rajat, Koneru, Kavya, Bansal, Meenakshi, Kalbfleisch, Theodore, Potnis, Chinmay S., Hartline, Kendall, Keynton, Robert S., Gupta, Gautam

Source: RSC advances. 11(22):13034-13039

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100119428977.0x000001&indx=1&recIds=ETOCvdc_100119428977.0x000001

Three decades of rat genomics: approaching the finish(ed) line.

Authors: Kalbfleisch, Theodore S.¹ (AUTHOR), Smith, Melissa L.² (AUTHOR), Ciosek, Julia L.¹ (AUTHOR), Li, Kai¹ (AUTHOR), Doris, Peter A.³ (AUTHOR) peter.a.doris@uth.tmc.edu

Source: Physiological Genomics. Dec2024, Vol. 56 Issue 12, p807-818. 12p.

Subject Terms: *RATTUS norvegicus, *BIOLOGICAL evolution, *PAN-genome, *GENETIC variation, *INDUSTRIAL costs, *RATS

Intrauterine vitamin D3 improves inflammation resolution in mares susceptible to persistent breeding-induced endometritis

Authors: Loux, Shavahn C, Scoggin, Kirsten E, Loynachan, Alan, Menarim, Bruno, May, Mary Grace, Muderspach, Natacha, Fedorka, Carleigh E, Troedsson, Mats HT, Kalbfleisch, Theodore S

Source: Journal of equine veterinary science. 125

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196158321.0x000001&indx=1&recIds=ETOCvdc_100196158321.0x000001

Inflamed synovial fluid induces a homeostatic response in bone marrow mononuclear cells in vitro: Implications for joint therapy

Authors: Menarim, Bruno C., Gillis, Kiersten H., Oliver, Andrea, Mason, Caitlin, Werre, Stephen R., Luo, Xin, Byron, Christopher R., Kalbfleisch, Theodore S., MacLeod, James N., Dahlgren, Linda A.

Source: FASEB journal. 34(3):4430-4444

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100110341826.0x000001&indx=1&recIds=ETOCvdc_100110341826.0x000001

MC1R and KIT Haplotypes Associate With Pigmentation Phenotypes of North American Yak (Bos grunniens)

Authors: Petersen, Jessica L, Kalbfleisch, Theodore S, Parris, Morgan, Tietze, Shauna M, Cruickshank, Jenifer

Source: Journal of heredity. 111(2):182-193

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100117708286.0x000001&indx=1&recIds=ETOCvdc_100117708286.0x000001

Thermodynamic Details of Pinholin S2168 Activation Revealed Using Alchemical Free Energy Simulations

Authors: Kalbfleisch, Theodore S., Ahammad, Tanbir, Lorigan, Gary A., Jaeger, Vance W.

Source: The Journal of Physical Chemistry - Part B; September 2024, Vol. 128 Issue: 36 p8762-8770, 9p

The Ruminant Telomere-to-Telomere (RT2T) Consortium

Authors: Kalbfleisch, Theodore S., McKay, Stephanie D., Murdoch, Brenda M., Adelson, David L., Almansa-Villa, Diego, Becker, Gabrielle, Beckett, Linda M., Benítez-Galeano, María José, Biase, Fernando, Casey, Theresa, Chuong, Edward, Clark, Emily, Clarke, Shannon, Cockett, Noelle, Couldrey, Christine, Davis, Brian W., Elsik, Christine G., Faraut, Thomas, Gao, Yahui, Genet, Carine, Grady, Patrick, Green, Jonathan, Green, Richard, Guan, Dailu, Hagen, Darren, Hartley, Gabrielle A., Heaton, Mike, Hoyt, Savannah J., Huang, Wen, Jarvis, Erich, Kalleberg, Jenna, Khatib, Hasan, Koepfi, Klaus-Peter, Koltes, James, Koren, Sergey, Kuehn, Christa, Leeb, Tosso, Leonard, Alexander, Liu, George E., Low, Wai Yee, McConnell, Hunter, McRae, Kathryn, Miga, Karen, Mousel, Michelle, Neibergs, Holly, Olagunju, Temitayo, Pennell, Matt, Petry, Bruna, Pewsner, Mirjam, Phillippy, Adam M., Pickett, Brandon D., Pineda, Paulene, Potapova, Tamara, Rachagani, Satyanarayana, Rhie, Arang, Rijnkels, Monique, Robic, Annie, Rodriguez Osorio, Nelida, Safonova, Yana, Schettini, Gustavo, Schnabel, Robert D., Sirpu Natesh, Nagabhishek, Stegemiller, Morgan, Storer, Jessica, Stothard, Paul, Stull, Caleb, Tosser-Klopp, Gwenola, Traglia, Germán M., Tuggle, Christopher K., Van Tassell, Curtis P., Watson, Corey, Weikard, Rosemarie, Wimmers, Klaus, Xie, Shangqian, Yang, Liu, Smith, Timothy P. L., O’Neill, Rachel J., Rosen, Benjamin D.

Source: Nature Genetics; August 2024, Vol. 56 Issue: 8 p1566-1573, 8p

Molecular cloning and functional expression of the K+ channel KV7.1 and the regulatory subunit KCNE1 from equine myocardium

Authors: Pedersen, Philip J., Thomsen, Kirsten B., Flak, Jon B., Tejada, Maria A., Hauser, Frank, Trachsel, Dagmar, Buhl, Rikke, Kalbfleisch, Theodore, DePriest, Michael Scott, MacLeod, James N., Calloe, Kirstine, Klaerke, Dan A.

Source: In Research in Veterinary Science August 2017 113:79-86

Haplotype Variation and Linkage Disequilibrium in 313 Human Genes

Authors: Stephens, J. Claiborne, Schneider, Julie A., Tanguay, Debra A., Choi, Julie, Acharya, Tara, Stanley, Scott E., Jiang, Ruhong, Messer, Chad J., Chew, Anne, Han, Jin-Hua, Duan, Jicheng, Carr, Janet L., Lee, Min Seob, Koshy, Beena, Kumar, A. Madan, Zhang, Ge, Newell, William R., Windemuth, Andreas, Xu, Chuanbo, Kalbfleisch, Theodore S., Shaner, Sandra L., Arnold, Kevin, Schulz, Vincent, Drysdale, Connie M., Nandabalan, Krishnan, Judson, Richard S., Ruaño, Gualberto, Vovis, Gerald F.

Source: Science, 2001 Jul . 293(5529), 489-493.

Access URL: https://www.jstor.org/stable/3084095

Improved reference genome for the domestic horse increases assembly contiguity and composition

Authors: Kalbfleisch, Theodore [and others]

Source: Communications biology. 1(1):1-8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190607755.0x000001&indx=1&recIds=ETOCvdc_100190607755.0x000001

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: proceedings

Authors: Dent, L., Mandape, Sammed, Pratap, Siddharth, Dong, Jianan, Davis, Jamaine, Gaddy, Jennifer, Amoah, Kofi, Damo, Steve, Marshall, Dana, Jones, Jacob, Brandt, Toni, Diaz, Gilberto, Wang, Qingguo, Gary, Todd, Yenamandra, Ashwini, Ghattas, Marina, Elrakaiby, Marwa, Aziz, Ramy, Zedan, Hamdallah, Elmassry, Moamen, ElRakaiby, Marwa, Lotfy, Mariam, Marcel, Jarrad, Khattab, Rania, Abdelfattah, Maha, Gilbert, Jack, Dini, Pouya, Loux, Shavahn, Scoggin, Kirsten, Esteller-Vico, Alejandro, Squires, Edward, Troedsson, Mats, Daels, Peter, Ball, Barry, De Silva, Kalpani, Bailey, Ernest, Stephens, Joel, Kalbfleisch, Theodore, Dolin, Christine, Poole, Lauren, Wilkey, Daniel, Rouchka, Eric, Arteel, Gavin, Barati, Michelle, Merchant, Michael, Higashi, Richard, Fan, Teresa, Moseley, Hunter, Lane, Andrew

Source: BMC proceedings. 11(9):1-6

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161525627.0x000001&indx=1&recIds=ETOCvdc_100161525627.0x000001