scCobra allows contrastive cell embedding learning with domain adaptation for single cell data integration and harmonization

Authors: Bowen Zhao, Kailu Song, Dong-Qing Wei, Yi Xiong, Jun Ding

Source: Communications Biology, Vol 8, Iss 1, Pp 1-18 (2025)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/0782c89fdb884dc3b043684ee4c519a4

β-Glucan induced plasma B cells differentiation to enhance antitumor immune responses by Dectin-1

Authors: Yu Bai, Jun Ding, Liuyang He, Zhichao Zhu, Jie Pan, Chunjian Qi

Source: BMC Immunology, Vol 26, Iss 1, Pp 1-14 (2025)

Subject Terms: β-glucan, Plasma B cells, Dectin-1, Tumor immunotherapy, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2172

Access URL: https://doaj.org/article/da87a6e502954f0482ccd61abb3add98

Near-theoretical strength and deformation stabilization achieved via grain boundary segregation and nano-clustering of solutes

Authors: Chang Liu, Jing Rao, Zhongji Sun, Wenjun Lu, James P. Best, Xuehan Li, Wenzhen Xia, Yilun Gong, Ye Wei, Bozhao Zhang, Jun Ding, Ge Wu, En Ma

Source: Nature Communications, Vol 15, Iss 1, Pp 1-10 (2024)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/9f2ed1c1ceb1471eaea6bea919eb8dd6

MATES: a deep learning-based model for locus-specific quantification of transposable elements in single cell

Authors: Ruohan Wang, Yumin Zheng, Zijian Zhang, Kailu Song, Erxi Wu, Xiaopeng Zhu, Tao P. Wu, Jun Ding

Source: Nature Communications, Vol 15, Iss 1, Pp 1-22 (2024)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/9e290e657161447889b75127feb24d19

Optimal protein requirement for rapid and coordinated test growth of juvenile sea urchin (Strongylocentrotus intermedius)

Authors: Panke Gong, Haijing Liu, Dan Gou, Weixiao Di, Huinan Zuo, Jun Ding, Yaqing Chang, Rantao Zuo

Source: Aquaculture Reports, Vol 40, Iss , Pp 102578- (2025)

Subject Terms: Sea urchin, Protein level, Feeding, Somatic growth, Test growth, Test characteristics, Aquaculture. Fisheries. Angling, SH1-691

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Relation: http://www.sciencedirect.com/science/article/pii/S2352513424006665; https://doaj.org/toc/2352-5134

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Characterization of SARS‐CoV‐2 Entry Genes in Skeletal Muscle and Impacts of In Vitro Versus In Vivo Infection

Authors: Salyan Bhattarai, Eva Kaufmann, Feng Liang, Yumin Zheng, Ekaterina Gusev, Qutayba Hamid, Jun Ding, Maziar Divangahi, Basil J. Petrof

Source: Journal of Cachexia, Sarcopenia and Muscle, Vol 16, Iss 1, Pp n/a-n/a (2025)

Subject Terms: ACE2, atrophy, COVID‐19, diaphragm, viral entry, Diseases of the musculoskeletal system, RC925-935, Human anatomy, QM1-695

File Description: electronic resource

Relation: https://doaj.org/toc/2190-5991; https://doaj.org/toc/2190-6009

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Effects of Dietary Vitamin A on the Growth Performance, Nonspecific Immune Response, Shell Microbiota and Red Spotted Disease Resistance of Juvenile Sea Urchin (Strongylocentrotus intermedius)

Authors: Dan Gou, Rujian Xu, Haijing Liu, Panke Gong, Weixiao Di, Huinan Zuo, Jun Ding, Yaqing Chang, Rantao Zuo

Source: Aquaculture Nutrition, Vol 2025 (2025)

Subject Terms: Aquaculture. Fisheries. Angling, SH1-691

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Relation: https://doaj.org/toc/1365-2095

Access URL: https://doaj.org/article/0bc72ab8e1de455eb36edd8846533b73

Erratum to 'Sleep Promotion by 3-Hydroxy-4-iminobutyric Acid in Walnut Diaphragma Juglandis Fructus'

Authors: Jian Ji, Yongli Ye, Lina Sheng, Jiadi Sun, Qianqian Hong, Chang Liu, Jun Ding, Shuxiang Geng, Deping Xu, Yinzhi Zhang, Xiulan Sun

Source: Research, Vol 8 (2025)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2639-5274

Access URL: https://doaj.org/article/944aeee53eef4ff29eb7c59e070c2f2c

Magnetic Interactions with Strain Gradient in Ultrathin Pr0.67Sr0.33MnO3 Films

Authors: Bangmin Zhang, Ping Yang, Jun Ding, Jingsheng Chen, Gan Moog Chow

Source: Engineering, Vol 40, Iss , Pp 158-165 (2024)

Subject Terms: Strain gradient, Manganite film, Octahedral rotation, Flexomagnetic, Magnetic interactions, Phase transition, Engineering (General). Civil engineering (General), TA1-2040

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2095809924002480; https://doaj.org/toc/2095-8099

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Impact-resistant supercapacitor by hydrogel-infused lattice

Authors: Shixiang Zhou, Yijing Zhao, Kaixi Zhang, Yanran Xun, Xueyu Tao, Wentao Yan, Wei Zhai, Jun Ding

Source: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b10ab24378ce45c987c914b48eb4be02

scSemiProfiler: Advancing large-scale single-cell studies through semi-profiling with deep generative models and active learning

Authors: Jingtao Wang, Gregory J. Fonseca, Jun Ding

Source: Nature Communications, Vol 15, Iss 1, Pp 1-27 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/4afd73cbe3014769bbe7121ea14202a1

scCross: a deep generative model for unifying single-cell multi-omics with seamless integration, cross-modal generation, and in silico exploration

Authors: Xiuhui Yang, Koren K. Mann, Hao Wu, Jun Ding

Source: Genome Biology, Vol 25, Iss 1, Pp 1-34 (2024)

Subject Terms: Single cell, Muti-omics, Cross-modal generation, In silico perturbations, Multimodal integration, Generative adversarial network, Biology (General), QH301-705.5, Genetics, QH426-470

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Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/2f7dbb898cec4e45933079a8ea301663

scHiCyclePred: a deep learning framework for predicting cell cycle phases from single-cell Hi-C data using multi-scale interaction information

Authors: Yingfu Wu, Zhenqi Shi, Xiangfei Zhou, Pengyu Zhang, Xiuhui Yang, Jun Ding, Hao Wu

Source: Communications Biology, Vol 7, Iss 1, Pp 1-13 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/4e5e44f336b64e229998de93a3366532

Aeration remodels the gut bacterial community and co-metabolic profile in sea cucumber (Apostichopus japonicus)

Authors: Changkun Dong, Tengyu Xing, Dongsheng Chen, Yanmin Zhang, Anzheng Liu, Yuchen Chen, Jun Ding, Luo Wang

Source: Aquaculture Reports, Vol 41, Iss , Pp 102684- (2025)

Subject Terms: Sea cucumber (Apostichopus japonicus), Aeration, Gut bacteria, Metabolome, Aquaculture. Fisheries. Angling, SH1-691

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352513425000705; https://doaj.org/toc/2352-5134

Access URL: https://doaj.org/article/028191e3369c421b93786c74e61b1b13

Predictive modeling of flexible EHD pumps using Kolmogorov–Arnold Networks

Authors: Yanhong Peng, Yuxin Wang, Fangchao Hu, Miao He, Zebing Mao, Xia Huang, Jun Ding

Source: Biomimetic Intelligence and Robotics, Vol 4, Iss 4, Pp 100184- (2024)

Subject Terms: Kolmogorov–Arnold Networks, Electrohydrodynamic pumps, Neural network, Electrical engineering. Electronics. Nuclear engineering, TK1-9971, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667379724000421; https://doaj.org/toc/2667-3797

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Case report: A novel nonsense mutation in the MARVELD2 gene causes nonsyndromic hearing loss in a China family

Authors: Chuican Huang, Zhenning Huang, Ping Wang, Xijing Wu, Qiaomiao Zhou, Jun Ding, Qing Luo, Weijia Wu, Xialin Fan, Lichun Fan

Source: Frontiers in Genetics, Vol 15 (2024)

Subject Terms: Deafness gene, MARVELD2, Nonsyndromic hearing loss, nonsense mutation, tricellulin, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2024.1507600/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/ca6462462cd84cffa30d1e45e1302908

Effects of artificial shelter on feeding, digestion, and growth of the sea cucumber Apostichopus japonicus

Authors: Xiang Li, Xiajing Wang, Zihe Zhao, Yingzhuo Sun, Jun Ding, Yaqing Chang, Chong Zhao

Source: Aquaculture Reports, Vol 39, Iss , Pp 102379- (2024)

Subject Terms: Sea cucumber, Artificial shelter, Behavior, Growth, Gut microbial composition, Aquaculture. Fisheries. Angling, SH1-691

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352513424004678; https://doaj.org/toc/2352-5134

Access URL: https://doaj.org/article/9d38212ceefa4ae0a7990132deea751c

A Novel Self‐Amplifying mRNA with Decreased Cytotoxicity and Enhanced Protein Expression by Macrodomain Mutations

Authors: Yue Gong, Danni Yong, Gensheng Liu, Jiang Xu, Jun Ding, William Jia

Source: Advanced Science, Vol 11, Iss 43, Pp n/a-n/a (2024)

Subject Terms: innate immune response, protein expression, self‐amplifying RNA, Science

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Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/1cb904fa97be42d9a2cd0aaf3eefdd34

The origin of exceptionally large ductility in molybdenum alloys dispersed with irregular-shaped La2O3 nano-particles

Authors: Yujie Chen, Yan Fang, Pengming Cheng, Xiaoxing Ke, Manchen Zhang, Jiawei Zou, Jun Ding, Bozhao Zhang, Lin Gu, Qinghua Zhang, Gang Liu, Qian Yu

Source: Nature Communications, Vol 15, Iss 1, Pp 1-9 (2024)

Subject Terms: Science

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Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/fe25c65049634c6aaccfebea992632f1

Tailored wrinkles for tunable sensing performance by stereolithography

Authors: Ruiyi Jiang, Jie Pu, Yuxuan Wang, Jipeng Chen, Gangwen Fu, Xue Chen, Jiayu Yang, Jianghua Shen, Xing Sun, Jun Ding, Xi Xu

Source: Interdisciplinary Materials, Vol 3, Iss 3, Pp 414-424 (2024)

Subject Terms: 3D printing, conducting polymer hydrogel, flexible sensor, micro‐wrinkle structure, Materials of engineering and construction. Mechanics of materials, TA401-492

File Description: electronic resource

Relation: https://doaj.org/toc/2767-441X

Access URL: https://doaj.org/article/09f4b69873074b518fd61a531288e7ad