Seamless integration of image and molecular analysis for spatial transcriptomics workflows

Authors: Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg

Source: BMC Genomics, Vol 21, Iss 1, Pp 1-7 (2020)

Subject Terms: Spatial transcriptomics, Transcriptomics, Genomics, Software, Visualization, Image processing, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-06832-3; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/51b162de24e2441ca4bcaffdb981c4b7

SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

Authors: Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg

Source: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-7 (2020)

Subject Terms: Spatial transcriptomics, Cluster analysis, Data visualization, R package, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-020-3489-7; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/e10c009c3c11444a935461eb494cb955

Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection

Authors: Sandra Axberg Pålsson, Aleksandra Dondalska, Joseph Bergenstråhle, Caroline Rolfes, Albin Björk, Laura Sedano, Ultan F. Power, Marie-Anne Rameix-Welti, Joakim Lundeberg, Marie Wahren-Herlenius, Peter Mastrangelo, Jean-Francois Eleouet, Ronan Le Goffic, Marie Galloux, Anna-Lena Spetz

Source: Frontiers in Immunology, Vol 11 (2020)

Subject Terms: respiratory syncytial virus (RSV), oligonucleotides, single-stranded oligonucleotides, ssON, antiviral, nucleolin, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2020.580547/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/1928873cab324d6fa11999043dd621a5

Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis

Authors: Peter Järver, Aleksandra Dondalska, Candice Poux, AnnSofi Sandberg, Joseph Bergenstråhle, Annette E. Sköld, Nathalie Dereuddre-Bosquet, Fréderic Martinon, Sandra Pålsson, Eman Zaghloul, David Brodin, Birgitta Sander, Kim A. Lennox, Mark A. Behlke, Samir EL-Andaloussi, Janne Lehtiö, Joakim Lundeberg, Roger LeGrand, Anna-Lena Spetz

Source: Scientific Reports, Vol 8, Iss 1, Pp 1-17 (2018)

Subject Terms: Clathrin-mediated Endocytosis (CME), Endosomal TLR, Endocytic Uptake, Signaling Endosomes, Inhibiting TLR4 Activation, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/8ee60f6cd9e941b7b20a1654b77636dc

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity

Authors: Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson, Fredrik Salmén, Christoph Ogris, Karolina Wallenborg, Jens Lagergren, Patrik Ståhl, Erik Sonnhammer, Thomas Helleday, Joakim Lundeberg

Source: Nature Communications, Vol 9, Iss 1, Pp 1-13 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/df809a2fbbdf48cfa7dfe5406664fb32

A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection

Authors: Candice Poux, Aleksandra Dondalska, Joseph Bergenstråhle, Sandra Pålsson, Vanessa Contreras, Claudia Arasa, Peter Järver, Jan Albert, David C. Busse, Roger LeGrand, Joakim Lundeberg, John S. Tregoning, Anna-Lena Spetz

Source: Frontiers in Immunology, Vol 10 (2019)

Subject Terms: influenza A, TLR3, single-stranded oligonucleotides, human monocyte-derived dendritic cells (MoDC), mice, cytokines, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fimmu.2019.02161/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/15ac5559956a41ec8c1585cb51e3c25a