A De Novo Whole Genome Assembly and Annotation of Parelaphostrongylus tenuis

Authors: Garwood Tyler J., Richards Jessie E., Macchietto Marissa G., Gerhold Richard W., Kania Stephen A., Garbe John R., Fountain-Jones Nicholas M., Larsen Peter A., Wolf Tiffany M.

Source: Journal of Nematology, Vol 56, Iss 1, Pp 2114-2120 (2024)

Subject Terms: annotation, assembly, brainworm, genome, genomics, meningeal worm, parelaphostrongylus tenuis, reference, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2640-396X

Access URL: https://doaj.org/article/071c3d1dad484735817e199700bbff71

Effect of molnupiravir on SARS-CoV-2 evolution in immunocompromised patients: a retrospective observational study

Authors: Fountain-Jones, Nicholas M, Vanhaeften, Robert, Williamson, Jan, Maskell, Janelle, Chua, I-Ly J, Charleston, Michael, Cooley, Louise

Source: In The Lancet Microbe May 2024 5(5):e452-e458

Functional traits explain waterbirds' host status, subtype richness, and community‐level infection risk for avian influenza

Authors: Yin, Shenglai, Li, Ning, Xu, Wenjie, Becker, Daniel J., Boer, Willem F., Xu, Chi, Mundkur, Taej, Fountain‐Jones, Nicholas M., Li, Chunlin, Han, Guan‐zhu, Wu, Qiang, Prosser, Diann J., Cui, Lijuan, Huang, Zheng Y. X.

Source: Ecology letters. 26(10):1780-1791

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196424857.0x000001&indx=1&recIds=ETOCvdc_100196424857.0x000001

Automated Analysis of PD1 and PDL1 Expression in Lymph Nodes and the Microenvironment of Transmissible Tumors in Tasmanian Devils

Authors: Russell, Grace G., Palmieri, Chiara, Darby, Jocelyn, Morris, Gary P., Fountain-Jones, Nicholas M., Pye, Ruth J., Flies, Andrew S.

Source: Immunological investigations. 52(6):661-680

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195002909.0x000001&indx=1&recIds=ETOCvdc_100195002909.0x000001

Positive associations matter: Microbial relationships drive tick microbiome composition

Authors: Fountain‐Jones, Nicholas M., Khoo, Benedict S., Rau, Austin, Berman, Jesse D., Burton, Erin N., Oliver, Jonathan D.

Source: Molecular ecology. 32(14):4078-4092

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189666063.0x000001&indx=1&recIds=ETOCvdc_100189666063.0x000001

The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils

Authors: Hamede, Rodrigo, Fountain‐Jones, Nicholas M., Arce, Fernando, Jones, Menna, Storfer, Andrew, Hohenlohe, Paul A., McCallum, Hamish, Roche, Benjamin, Ujvari, Beata, Thomas, Frédéric

Source: Evolutionary applications. 16(7):1316-1327

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187873030.0x000001&indx=1&recIds=ETOCvdc_100187873030.0x000001

Improving the predictability and interpretability of co‐occurrence modelling through feature‐based joint species distribution ensembles

Authors: Powell‐Romero, Francisca, Fountain‐Jones, Nicholas M., Norberg, Anna, Clark, Nicholas J.

Source: Methods in ecology and evolution. 14(1):146-161

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100177404043.0x000001&indx=1&recIds=ETOCvdc_100177404043.0x000001

Environment, vector, or host? Using machine learning to untangle the mechanisms driving arbovirus outbreaks

Authors: Alkhamis, Moh A., Fountain-Jones, Nicholas M., Aguilar-Vega, Cecilia, Sánchez-Vizcaíno, José M.

Source: Ecological Applications, 2021 Oct 01. 31(7), 1-12.

Access URL: https://www.jstor.org/stable/27092217

Mainstreaming Microbes across Biomes

Authors: CLARKE, LAURENCE J., JONES, PENELOPE J., AMMITZBOLL, HANS, BARMUTA, LEON A., BREED, MARTIN F., CHARITON, ANTHONY, CHARLESTON, MICHAEL, DAKWA, VONGAI, DEWI, FERA, ERI, RAJARAMAN, FOUNTAIN-JONES, NICHOLAS M., FREEMAN, JULES, KENDAL, DAVE, MCDOUGAL, REBECCA, RAES, ERIC J., LI SAN SOW, SWAN, STAPLES, TIMOTHY, SUTCLIFFE, BRODIE, VEMURI, RAVICHANDRA, WEYRICH, LAURA S., FLIES, EMILY J.

Source: BioScience, 2020 Jul 01. 70(7), 589-596.

Access URL: https://www.jstor.org/stable/26923916

Complex evolutionary history of felid anelloviruses

Authors: Kraberger, Simona, Serieys, Laurel EK., Richet, Cécile, Fountain-Jones, Nicholas M., Baele, Guy, Bishop, Jacqueline M., Nehring, Mary, Ivan, Jacob S., Newkirk, Eric S., Squires, John R., Lund, Michael C., Riley, Seth PD., Wilmers, Christopher C., van Helden, Paul D., Van Doorslaer, Koenraad, Culver, Melanie, VandeWoude, Sue, Martin, Darren P., Varsani, Arvind

Source: In Virology October 2021 562:176-189

Group density, disease, and season shape territory size and overlap of social carnivores

Authors: Brandell, Ellen E., Fountain‐Jones, Nicholas M., Gilbertson, Marie L. J., Cross, Paul C., Hudson, Peter J., Smith, Douglas W., Stahler, Daniel R., Packer, Craig, Craft, Meggan E., Farine, Damien

Source: Journal of animal ecology. 90(1):87-101

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How to make more from exposure data? An integrated machine learning pipeline to predict pathogen exposure

Authors: Fountain-Jones, Nicholas M., Machado, Gustavo, Carver, Scott, Packer, Craig, Recamonde-Mendoza, Mariana, Craft, Meggan E.

Source: Journal of Animal Ecology, 2019 Oct 01. 88(10), 1447-1461.

Access URL: https://www.jstor.org/stable/48580326

Does the virus cross the road? Viral phylogeographic patterns among bobcat populations reflect a history of urban development

Authors: Kozakiewicz, Christopher P., Burridge, Christopher P., Funk, W. Chris, Craft, Meggan E., Crooks, Kevin R., Fisher, Robert N., Fountain‐Jones, Nicholas M., Jennings, Megan K., Kraberger, Simona J., Lee, Justin S., Lyren, Lisa M., Riley, Seth P. D., Serieys, Laurel E. K., VandeWoude, Sue, Carver, Scott

Source: Evolutionary applications. 13(8):1806-1817

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111837633.0x000001&indx=1&recIds=ETOCvdc_100111837633.0x000001

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition

Authors: Fountain‐Jones, Nicholas M., Clark, Nicholas J., Kinsley, Amy C., Carstensen, Michelle, Forester, James, Johnson, Timothy J., Miller, Elizabeth A., Moore, Seth, Wolf, Tiffany M., Craft, Meggan E., Hoye, Bethany

Source: Journal of animal ecology. 89(3):817-828

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103222574.0x000001&indx=1&recIds=ETOCvdc_100103222574.0x000001

Species-specific spatiotemporal patterns of leopard, lion and tiger attacks on humans

Authors: Packer, Craig, Shivakumar, Shweta, Athreya, Vidya, Craft, Meggan E., Dhanwatey, Harshawardhan, Dhanwatey, Poonam, Gurung, Bhim, Joshi, Anup, Kushnir, Hadas, Linnell, John D. C., Fountain-Jones, Nicholas M.

Source: Journal of Applied Ecology, 2019 Mar 01. 56(3), 585-593.

Access URL: https://www.jstor.org/stable/48580305

Why some countries but not others? Urbanisation, GDP and endemic disease predict global SARS-CoV-2 excess mortality patterns.

Authors: Fountain-Jones, Nicholas M., Charleston, Michael, Flies, Emily J., Carver, Scott, Yates, Luke A.

Source: Landscape Ecology; Aug2024, Vol. 39 Issue 8, p1-10, 10p

Interspecies bacterial communication produces a delicate balance between Vibrio cholerae and the chironomid egg mass microbiome

Authors: Oliver, Jonathan D., Fountain‐Jones, Nicholas M.

Source: Molecular ecology. 30(7):1571-1573

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100117645349.0x000001&indx=1&recIds=ETOCvdc_100117645349.0x000001

Urbanization impacts apex predator gene flow but not genetic diversity across an urban‐rural divide

Authors: Trumbo, Daryl R., Salerno, Patricia E., Logan, Kenneth A., Alldredge, Mathew W., Gagne, Roderick B., Kozakiewicz, Christopher P., Kraberger, Simona, Fountain‐Jones, Nicholas M., Craft, Meggan E., Carver, Scott, Ernest, Holly B., Crooks, Kevin R., VandeWoude, Sue, Funk, W. Chris

Source: Molecular ecology. 28(22):4926-4940

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Endemic infection can shape exposure to novel pathogens: Pathogen co‐occurrence networks in the Serengeti lions

Authors: Fountain‐Jones, Nicholas M., Packer, Craig, Jacquot, Maude, Blanchet, F. Guillaume, Terio, Karen, Craft, Meggan E., Ezenwa, Vanessa

Source: Ecology letters. 22(6):904-913

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Parasites as conservation tools

Authors: Gagne, Roderick B., Crooks, Kevin R., Craft, Meggan E., Chiu, Elliott S., Fountain‐Jones, Nicholas M., Malmberg, Jennifer L., Carver, Scott, Funk, W. Chris, VandeWoude, Sue

Source: Conservation biology. 36(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100142031660.0x000001&indx=1&recIds=ETOCvdc_100142031660.0x000001