Bacterial lysis, autophagy and innate immune responses during adjunctive phage therapy in a child

Authors: Ameneh Khatami, Ruby C Y Lin, Aleksandra Petrovic‐Fabijan, Sivan Alkalay‐Oren, Sulaiman Almuzam, Philip N Britton, Michael J Brownstein, Quang Dao, Joe Fackler, Ronen Hazan, Bri’Anna Horne, Ran Nir‐Paz, Jonathan R Iredell

Source: EMBO Molecular Medicine, Vol 13, Iss 9, Pp 1-9 (2021)

Subject Terms: bacteriophage, child, immune response, osteoarticular infection, Pseudomonas aeruginosa, Medicine (General), R5-920, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1757-4676; https://doaj.org/toc/1757-4684

Access URL: https://doaj.org/article/575fc9e7205a435d8d770c22adf62166

Specialised functions of two common plasmid mediated toxin-antitoxin systems, ccdAB and pemIK, in Enterobacteriaceae.

Authors: Alma Y Wu, Muhammad Kamruzzaman, Jonathan R Iredell

Source: PLoS ONE, Vol 15, Iss 6, p e0230652 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/1b811baf8de4492781954b49c9e874c3

Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen.

Authors: Alicia Fajardo-Lubián, Nouri L Ben Zakour, Alex Agyekum, Qin Qi, Jonathan R Iredell

Source: PLoS Pathogens, Vol 15, Iss 3, p e1007218 (2019)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC6436753?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/1434ac04a30642c482ceb4016586fb91

Pre- and post-weaning scours in southeastern Australia: A survey of 22 commercial pig herds and characterisation of Escherichia coli isolates.

Authors: Lechelle K Van Breda, Om P Dhungyel, Andrew N Ginn, Jonathan R Iredell, Michael P Ward

Source: PLoS ONE, Vol 12, Iss 3, p e0172528 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5342203?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/97ad8bb618bd41f4a565aeafb598b5dc

Plasmid interference for curing antibiotic resistance plasmids in vivo.

Authors: Muhammad Kamruzzaman, Shereen Shoma, Christopher M Thomas, Sally R Partridge, Jonathan R Iredell

Source: PLoS ONE, Vol 12, Iss 2, p e0172913 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5330492?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/608e1c9cc0a34fe3b225ca7e5ebdd12d

MALDI-TOF Mass Spectrometry for Multilocus Sequence Typing of Escherichia coli Reveals Diversity among Isolates Carrying blaCMY₋₂-Like Genes.

Authors: Kaitlin A Tagg, Andrew N Ginn, Sally R Partridge, Jonathan R Iredell

Source: PLoS ONE, Vol 10, Iss 11, p e0143446 (2015)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4654469?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f701d7cc9cec4ec5b761f32eb89b7fb6

Viral pneumonitis is increased in obese patients during the first wave of pandemic A(H1N1) 2009 virus.

Authors: Jen Kok, Christopher C Blyth, Hong Foo, Michael J Bailey, David V Pilcher, Steven A Webb, Ian M Seppelt, Dominic E Dwyer, Jonathan R Iredell

Source: PLoS ONE, Vol 8, Iss 2, p e55631 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3572103?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/88fbe1f2bb3743a3b867ba361681c1fc

The ecology of antibiotic use in the ICU: homogeneous prescribing of cefepime but not tazocin selects for antibiotic resistant infection.

Authors: Andrew N Ginn, Agnieszka M Wiklendt, Heather F Gidding, Narelle George, James S O'Driscoll, Sally R Partridge, Brian I O'Toole, Rita A Perri, Joan Faoagali, John E Gallagher, Jeffrey Lipman, Jonathan R Iredell

Source: PLoS ONE, Vol 7, Iss 6, p e38719 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3382621?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/b4ad7132b5174692998cbc20c24a239f

Identification of bacteria in blood culture broths using matrix-assisted laser desorption-ionization Sepsityper™ and time of flight mass spectrometry.

Authors: Jen Kok, Lee C Thomas, Thomas Olma, Sharon C A Chen, Jonathan R Iredell

Source: PLoS ONE, Vol 6, Iss 8, p e23285 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3156714?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/64fae9bcf67b429abfe7d7ec72d07246

Matrix-assisted laser desorption ionization-time of flight mass spectrometry identification of yeasts is contingent on robust reference spectra.

Authors: Angie Pinto, Catriona Halliday, Melissa Zahra, Sebastian van Hal, Tom Olma, Krystyna Maszewska, Jonathan R Iredell, Wieland Meyer, Sharon C-A Chen

Source: PLoS ONE, Vol 6, Iss 10, p e25712 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3192753?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/df601a213026490197a51582fac3e336

Quantifying the Economic and Clinical Value of Reducing Antimicrobial Resistance in Gram-negative Pathogens Causing Hospital-Acquired Infections in Australia

Authors: Jason P. Gordon, Amer Al Taie, Ryan L. Miller, James W. Dennis, Mark A. T. Blaskovich, Jonathan R. Iredell, John D. Turnidge, Geoffrey W. Coombs, David Charles Grolman, Jacqueline Youssef

Source: Infectious Diseases and Therapy, Vol 12, Iss 7, Pp 1875-1889 (2023)

Subject Terms: Antimicrobial resistance, Hospital-acquired infections, Gram-negative, Economic evaluation, Decision making, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/2193-8229; https://doaj.org/toc/2193-6382

Access URL: https://doaj.org/article/24afa07774464f74bd27b49a88271d34

The evolution and international spread of extensively drug resistant Shigella sonnei

Authors: Lewis C. E. Mason, David R. Greig, Lauren A. Cowley, Sally R. Partridge, Elena Martinez, Grace A. Blackwell, Charlotte E. Chong, P. Malaka De Silva, Rebecca J. Bengtsson, Jenny L. Draper, Andrew N. Ginn, Indy Sandaradura, Eby M. Sim, Jonathan R. Iredell, Vitali Sintchenko, Danielle J. Ingle, Benjamin P. Howden, Sophie Lefèvre, Elisabeth Njamkepo, François-Xavier Weill, Pieter-Jan Ceyssens, Claire Jenkins, Kate S. Baker

Source: Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/903be358a29547c2aff2a14b03f46bbd

Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria

Authors: Andre Mu, William P. Klare, Sarah L. Baines, C. N. Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D. Shah, Nitika Neha, Snehal Jadhav, Sally R. Partridge, Amanda J. Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J. Hancock, Laura Álvarez-Fraga, David M. P. De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J. Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G. Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R. Stephen, Marie Everest, Matt I. Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A. Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N. Cole, Victor Nizet, Tania C. Sorrell, Anton Y. Peleg, David L. Paterson, Scott A. Beatson, Jemma Wu, Mark P. Molloy, Anna E. Syme, Robert J. A. Goode, Adam A. Hunter, Grahame Bowland, Nicholas P. West, Marc R. Wilkins, Steven P. Djordjevic, Mark R. Davies, Torsten Seemann, Benjamin P. Howden, Dana Pascovici, Sonika Tyagi, Ralf B. Schittenhelm, David P. De Souza, Malcolm J. McConville, Jonathan R. Iredell, Stuart J. Cordwell, Richard A. Strugnell, Timothy P. Stinear, Mark A. Schembri, Mark J. Walker

Source: Nature Communications, Vol 14, Iss 1, Pp 1-21 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6d65b18b91de403488fe5eca204df6be

Seeking patterns of antibiotic resistance in ATLAS, an open, raw MIC database with patient metadata

Authors: Pablo Catalán, Emily Wood, Jessica M. A. Blair, Ivana Gudelj, Jonathan R. Iredell, Robert E. Beardmore

Source: Nature Communications, Vol 13, Iss 1, Pp 1-15 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/554efb0606b5483784bf9d3ba61d6eca

Third generation cephalosporins and piperacillin/tazobactam have distinct impacts on the microbiota of critically ill patients

Authors: Hasinika K. A. H. Gamage, Carola Venturini, Sasha G. Tetu, Masrura Kabir, Vineet Nayyar, Andrew N. Ginn, Belinda Roychoudhry, Lee Thomas, Mitchell Brown, Andrew Holmes, Sally R. Partridge, Ian Seppelt, Ian T. Paulsen, Jonathan R. Iredell

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-10 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/89ef1323acf544d9a6dfaafa7d3554be

Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei

Authors: Lewis C. E. Mason, David R. Greig, Lauren A. Cowley, Sally R. Partridge, Elena Martinez, Grace A. Blackwell, Charlotte E. Chong, P. Malaka De Silva, Rebecca J. Bengtsson, Jenny L. Draper, Andrew N. Ginn, Indy Sandaradura, Eby M. Sim, Jonathan R. Iredell, Vitali Sintchenko, Danielle J. Ingle, Benjamin P. Howden, Sophie Lefèvre, Elisabeth Njamkepo, François-Xavier Weill, Pieter-Jan Ceyssens, Claire Jenkins, Kate S. Baker

Source: Nature Communications, Vol 14, Iss 1, Pp 1-1 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/4c9ad3a1dee04f11960ad1364b3fd23b

A Streamlined Approach for Fluorescence Labelling of Low-Copy-Number Plasmids for Determination of Conjugation Frequency by Flow Cytometry

Authors: Qin Qi, Muhammad Kamruzzaman, Jonathan R. Iredell

Source: Microorganisms, Vol 11, Iss 4, p 878 (2023)

Subject Terms: plasmid, conjugation, fluorescence labelling, flow cytometry, horizontal gene transfer, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/4/878; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/77e56f6ca49f4ea4a82c088996a587d7

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Authors: Vanessa R. Marcelino, Philip T. L. C. Clausen, Jan P. Buchmann, Michelle Wille, Jonathan R. Iredell, Wieland Meyer, Ole Lund, Tania C. Sorrell, Edward C. Holmes

Source: Genome Biology, Vol 21, Iss 1, Pp 1-15 (2020)

Subject Terms: Microbiome, Metagenomic classifier, ConClave sorting, Fungi, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-020-02014-2; https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/603ad5e8d3794c12b57c37afbe8c7179

Characterizing the role of porin mutations in susceptibility of beta lactamase producing Klebsiella pneumoniae isolates to ceftaroline and ceftaroline-avibactam

Authors: Ali Khalid, Alicia Fajardo Lubián, Li Ma, Ruby C.Y. Lin, Jonathan R. Iredell

Source: International Journal of Infectious Diseases, Vol 93, Iss , Pp 252-257 (2020)

Subject Terms: Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1201971220300631; https://doaj.org/toc/1201-9712

Access URL: https://doaj.org/article/bab13a2f8f4e4023b9d9badfbdc68dec

The higBA- Type Toxin-Antitoxin System in IncC Plasmids Is a Mobilizable Ciprofloxacin-Inducible System

Authors: Qin Qi, Muhammad Kamruzzaman, Jonathan R. Iredell

Source: mSphere, Vol 6, Iss 3 (2021)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/53c5d843cc3c4d84962a4fc6f4d85e89