OBGene: Optimal barcode generator for NGS experiments

Authors: Atashpaz-Gargari, Esmaeil, Esfahani, Mohammad Shahrokh, Metz, Richard, Johnson, Charles D.

Source: Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) Genomic Signal Processing and Statistics, (GENSIPS), 2012 IEEE International Workshop on. :90-94 Dec, 2012

Relation: 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)

Fast DNA barcode generating algorithm using Radix Coding method

Authors: Nikooienejad, Amir, Metz, Richard, Yoon, Byung-Jun, Johnson, Charles D.

Source: Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) Genomic Signal Processing and Statistics, (GENSIPS), 2012 IEEE International Workshop on. :26-30 Dec, 2012

Relation: 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)

Genetic dissection of end‐use quality traits in two widely adapted wheat cultivars 'TAM 111' and 'TAM 112'

Authors: Dhakal, Smit, Liu, Xiaoxiao, Girard, Audrey, Chu, Chenggen, Yang, Yan, Wang, Shichen, Xue, Qingwu, Rudd, Jackie C., Ibrahim, Amir M. H., Awika, Joseph M., Johnson, Charles D., Jessup, Kirk E., Baker, Jason A., Garza, Lisa, Devkota, Ravindra N., Baker, Shannon, Metz, Richard P., Liu, Shuyu

Source: Crop science. 61(3):1944-1959

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100137118198.0x000001&indx=1&recIds=ETOCvdc_100137118198.0x000001

Transcriptome profiling of two rice varieties reveals their molecular responses under high night-time temperature.

Authors: Mustahsan, Wardah K., Liang, Yuya, Mohammed, Abdul R., Johnson, Charles D., Septiningsih, Endang M., Tarpley, Lee, Thomson, Michael J.

Source: PLoS ONE; 10/10/2024, Vol. 19 Issue 10, p1-19, 19p

Subject Terms: PLANT membranes, PLANT physiology, AGRICULTURAL productivity, PHOTOSYNTHETIC rates, CROP quality

Late-life dietary folate restriction reduces biosynthesis without compromising healthspan in mice.

Authors: Blank, Heidi M., Hammer, Staci E., Boatright, Laurel, Roberts, Courtney, Heyden, Katarina E., Nagarajan, Aravindh, Mitsuhiro Tsuchiya, Brun, Marcel, Johnson, Charles D., Stover, Patrick J., Sitcheran, Raquel, Kennedy, Brian K., Adams, L. Garry, Kaeberlein, Matt, Field, Martha S., Threadgill, David W., Andrews-Polymenis, Helene L., Polymenis, Michael

Source: Life Science Alliance; Oct2024, Vol. 7 Issue 10, p1-18, 18p

Horn fly transcriptome data of ten populations from the southern United States with varying degrees and molecular mechanisms of pesticide resistance

Authors: Bendele, Kylie G., Guerrero, Felix D., Lohmeyer, Kimberly H., Foil, Lane D., Metz, Richard P., Johnson, Charles D.

Source: Data in brief. 48

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193902270.0x000001&indx=1&recIds=ETOCvdc_100193902270.0x000001

De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp

Authors: Ghaffari, Noushin, Arshad, Osama A., Jeong, Hyundoo, Thiltges, John, Criscitiello, Michael F., Yoon, Byung-Jun, Datta, Aniruddha, Johnson, Charles D.

Source: 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP) Signal and Information Processing (GlobalSIP), 2014 IEEE Global Conference on. :1342-1343 Dec, 2014

Relation: 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP)

Identification and quantification of coding and long non‐coding RNAs in stallion spermatozoa separated by density

Authors: Ing, Nancy H., Konganti, Kranti, Ghaffari, Noushin, Johnson, Charles D., Forrest, David W., Love, Charles C., Varner, Dickson D.

Source: Andrology. 8(5):1409-1418

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100106636996.0x000001&indx=1&recIds=ETOCvdc_100106636996.0x000001

Specific microRNAs in stallion spermatozoa are potential biomarkers of high functionality.

Authors: Ing, Nancy H., Konganti, Kranti, Ghaffar, Noushin, Johnson, Charles D., Forrest, David W., Love, Charles C., Varner, Dickson D.

Source: Reproduction in Domestic Animals; Jul2024, Vol. 59 Issue 7, p1-12, 12p

Subject Terms: DENSITY gradient centrifugation, MICRORNA, SPERMATOZOA, STALLIONS, GENE expression, NON-coding RNA

Rapid Adaptation and Interspecific Introgression in the North American Crop Pest Helicoverpa zea.

Authors: North, Henry L, Fu, Zhen, Metz, Richard, Stull, Matt A, Johnson, Charles D, Shirley, Xanthe, Crumley, Kate, Reisig, Dominic, Kerns, David L, Gilligan, Todd, Walsh, Tom, Jiggins, Chris D, Sword, Gregory A

Source: Molecular Biology & Evolution; Jul2024, Vol. 41 Issue 7, p1-25, 25p

Subject Terms: PESTICIDE resistance, HELIOTHIS zea, HELICOVERPA armigera, PEST control, INSECT pests

Young and aged TLR4 deficient mice show sex-dependent enhancements in spatial memory and alterations in interleukin-1 related genes

Authors: Potter, Opal V., Giedraitis, Megan E., Johnson, Charles D., Cox, Mackenzie N., Kohman, Rachel A.

Source: In Brain Behavior and Immunity February 2019 76:37-47

Case Report: Paucisymptomatic College-Age Population as a Reservoir for Potentially Neutralization-Resistant Severe Acute Respiratory Syndrome Coronavirus 2 Variants

Authors: Neuman, Benjamin W., Brashear, Wesley A., Brun, Marcel, Chaki, Sankar P., Fischer, Rebecca S. B., Guidry, Sierra J., Hill, Joshua E., Hillhouse, Andrew E., Johnson, Charles D., Kahl-McDonagh, Melissa M.

Source: American journal of tropical medicine and hygiene. 105(5):1227-1229

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN627854467&indx=1&recIds=ETOCRN627854467

Developing KASP Markers on a Major Stripe Rust Resistance QTL in a Popular Wheat TAM 111 Using 90K Array and Genotyping‐by‐Sequencing SNPs

Authors: Yang, Yan, Basnet, Bhoja R., Ibrahim, Amir M.H., Rudd, Jackie C., Chen, Xianming, Bowden, Robert L., Xue, Qingwu, Wang, Shichen, Johnson, Charles D., Metz, Richard, Mason, Richard Esten, Hays, Dirk B., Liu, Shuyu

Source: Crop science. 59(1):165-175

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100095907320.0x000001&indx=1&recIds=ETOCvdc_100095907320.0x000001

Unraveling Gene-Gene Interactions Regulated by Ligands of the Aryl Hydrocarbon Receptor

Authors: Johnson, Charles D., Balagurunathan, Yoganand, Tadesse, Mahlet G., Falahatpisheh, M. Hadi, Brun, Marcel, Walker, Mary K., Dougherty, Edward R., Ramos, Kenneth S.

Source: Environmental Health Perspectives, 2004 Mar 01. 112(4), 403-412.

Access URL: https://www.jstor.org/stable/3837948

Virtual page generation mechanism

Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus

Authors: Guerrero, Felix D., Ghaffari, Noushin, Bendele, Kylie G., Metz, Richard P., Dickens, C. Michael, Blood, Philip D., Tidwell, Jason, Miller, Robert J., de León, Adalberto A. Pérez, Teel, Pete D., Johnson, Charles D.

Source: Data in brief. 35

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134404749.0x000001&indx=1&recIds=ETOCvdc_100134404749.0x000001

Translational control of lipogenic enzymes in the cell cycle of synchronous, growing yeast cells

Authors: Blank, Heidi M, Perez, Ricardo, He, Chong, Maitra, Nairita, Metz, Richard, Hill, Joshua, Lin, Yuhong, Johnson, Charles D, Bankaitis, Vytas A, Kennedy, Brian K, Aramayo, Rodolfo, Polymenis, Michael

Source: EMBO journal. 36(4):487-502

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186097881.0x000001&indx=1&recIds=ETOCvdc_100186097881.0x000001

HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

Authors: Abante, Jordi, Ghaffari, Noushin, Johnson, Charles D., Datta, Aniruddha

Source: BMC genomics. 18(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100140988837.0x000001&indx=1&recIds=ETOCvdc_100140988837.0x000001

Modulation of RNA Polymerase II Phosphorylation Downstream of Pathogen Perception Orchestrates Plant Immunity

Authors: Li, Fangjun, Cheng, Cheng, Cui, Fuhao, de Oliveira, Marcos V.V., Yu, Xiao, Meng, Xiangzong, Intorne, Aline C., Babilonia, Kevin, Li, Maoying, Li, Bo, Chen, Sixue, Ma, Xianfeng, Xiao, Shunyuan, Zheng, Yi, Fei, Zhangjun, Metz, Richard P., Johnson, Charles D., Koiwa, Hisashi, Sun, Wenxian, Li, Zhaohu, Filho, Gonçalo A. de Souza, Shan, Libo, He, Ping

Source: In Cell Host & Microbe 10 December 2014 16(6):748-758

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Authors: Qiu, Chenxi, Jin, Huiyan, Vvedenskaya, Irina, Llenas, Jordi Abante, Zhao, Tingting, Malik, Indranil, Visbisky, Alex M., Schwartz, Scott L., Cui, Ping, Čabart, Pavel, Han, Kang Hoo, Lai, William K. M., Metz, Richard P., Johnson, Charles D., Sze, Sing-Hoi, Pugh, B. Franklin, Nickels, Bryce E., Kaplan, Craig D.

Source: Genome biology. 21(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171989313.0x000001&indx=1&recIds=ETOCvdc_100171989313.0x000001