Deficiency of the lipid flippase ATP10A causes diet-induced dyslipidemia in female mice

Authors: Adriana C. Norris, Eugenia M. Yazlovitskaya, Lin Zhu, Bailey S. Rose, Jody C. May, Katherine N. Gibson-Corley, John A. McLean, John M. Stafford, Todd R. Graham

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-16 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/deaa33da942b4706af48c6856d33d349

A human milk oligosaccharide prevents intestinal inflammation in adulthood via modulating gut microbial metabolism

Authors: Kasey M. Schalich, Matthew A. Buendia, Harpreet Kaur, Yash A. Choksi, M. Kay Washington, Gabriela S. Codreanu, Stacy D. Sherrod, John A. McLean, Richard M. Peek, Jr., Sari A. Acra, Steven D. Townsend, Fang Yan

Source: mBio, Vol 15, Iss 4 (2024)

Subject Terms: 2′-fucosyllactose, Bifidobacterium longum subsp. infantis, human milk oligosaccharide, inflammatory bowel diseases, intestinal barrier, pantothenate, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/b1067dced790480e8612a3e92377e026

Metabolism of parathyroid organoids

Authors: Konjeti R. Sekhar, Simona G. Codreanu, Olivia C. Williams, Jeffrey C. Rathmell, W. Kimryn Rathmell, John A. McLean, Stacy D. Sherrod, Naira Baregamian

Source: Frontiers in Endocrinology, Vol 14 (2023)

Subject Terms: parathyroid organoids, primary hyperparathyroidism, cryopreserved parathyroid organoids, parathyroid metabolism, untargeted metabolomics, mitochondrial function, Diseases of the endocrine glands. Clinical endocrinology, RC648-665

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fendo.2023.1223312/full; https://doaj.org/toc/1664-2392

Access URL: https://doaj.org/article/42c58611fb444e2e9c4d865f9c1364d3

Genomic, transcriptomic, and metabolomic profiles of hiPSC-derived dopamine neurons from clinically discordant brothers with identical PRKN deletions

Authors: Holly N. Cukier, Hyunjin Kim, Anthony J. Griswold, Simona G. Codreanu, Lisa M. Prince, Stacy D. Sherrod, John A. McLean, Derek M. Dykxhoorn, Kevin C. Ess, Peter Hedera, Aaron B. Bowman, M. Diana Neely

Source: npj Parkinson's Disease, Vol 8, Iss 1, Pp 1-17 (2022)

Subject Terms: Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://doaj.org/toc/2373-8057

Access URL: https://doaj.org/article/9cfa439da89548cd82667ecafd084ddb

Temporal changes in glucose metabolism reflect polarization in resident and monocyte-derived macrophages after myocardial infarction

Authors: Alan J. Mouton, Nikaela M. Aitken, Sydney P. Moak, Jussara M. do Carmo, Alexandre A. da Silva, Ana C. M. Omoto, Xuan Li, Zhen Wang, Alexandra C. Schrimpe-Rutledge, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean, John E. Hall

Source: Frontiers in Cardiovascular Medicine, Vol 10 (2023)

Subject Terms: glycolysis, immunometabolism, macrophage, inflammation, heart failure, Diseases of the circulatory (Cardiovascular) system, RC666-701

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcvm.2023.1136252/full; https://doaj.org/toc/2297-055X

Access URL: https://doaj.org/article/5ddb9397e379446ebc06b0ae59b7d981

Serine Deamination Is a New Acid Tolerance Mechanism Observed in Uropathogenic Escherichia coli

Authors: Michelle A. Wiebe, John R. Brannon, Bradley D. Steiner, Adebisi Bamidele, Alexandra C. Schrimpe-Rutledge, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean, Maria Hadjifrangiskou

Source: mBio, Vol 13, Iss 6 (2022)

Subject Terms: Escherichia coli, acid stress, bacterial stress response, metabolomics, serine, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/94d3b34cefde4c1ba018ab558b5de37f

Processes in DNA damage response from a whole-cell multi-omics perspective

Authors: James C. Pino, Alexander L.R. Lubbock, Leonard A. Harris, Danielle B. Gutierrez, Melissa A. Farrow, Nicole Muszynski, Tina Tsui, Stacy D. Sherrod, Jeremy L. Norris, John A. McLean, Richard M. Caprioli, John P. Wikswo, Carlos F. Lopez

Source: iScience, Vol 25, Iss 11, Pp 105341- (2022)

Subject Terms: Bioinformatics, Complex system biology, Systems biology, Data processing in systems biology, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004222016133; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/db35e3c9ebe3431c98e583179d280a79

Crowd-Sourced Chemistry: Considerations for Building a Standardized Database to Improve Omic Analyses

Authors: Jaqueline A. Picache, Jody C. May, John A. McLean

Source: ACS Omega, Vol 5, Iss 2, Pp 980-985 (2020)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/094cd45453684b80acb2081468a7c570

Chlorpyrifos Disrupts Acetylcholine Metabolism Across Model Blood-Brain Barrier

Authors: Dusty R. Miller, Ethan S. McClain, James N. Dodds, Andrzej Balinski, Jody C. May, John A. McLean, David E. Cliffel

Source: Frontiers in Bioengineering and Biotechnology, Vol 9 (2021)

Subject Terms: organophosphate, mass spectrometry, organ-on-a-chip, electrochemistry, pesticide, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbioe.2021.622175/full; https://doaj.org/toc/2296-4185

Access URL: https://doaj.org/article/004f0b9524ec4a3987f75b863dcd5caf

The acyl chains of phosphoinositide PIP3 alter the structure and function of nuclear receptor steroidogenic factor-1

Authors: Jamal M. Bryant, M. Merced Malabanan, Boden H. Vanderloop, Charles M. Nichols, Zeinab Haratipour, Katrina T. Poon, Stacy D. Sherrod, John A. McLean, Raymond D. Blind

Source: Journal of Lipid Research, Vol 62, Iss , Pp 100081- (2021)

Subject Terms: nuclear PIP3, PtdIns(3,4,5)P3, PtdIns(4,5)P2, nuclear receptors, X-ray crystallography, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227521000638; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/71b06d43119d4ae0813ec9f70830c61a

Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates

Authors: Allison R. Eberly, Connor J. Beebout, Ching Man Carmen Tong, Gerald T. Van Horn, Hamilton D. Green, Madison J. Fitzgerald, Shuvro De, Emily K. Apple, Alexandra C. Schrimpe-Rutledge, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean, Douglass B. Clayton, Charles W. Stratton, Jonathan E. Schmitz, Maria Hadjifrangiskou

Source: Data in Brief, Vol 31, Iss , Pp 105811- (2020)

Subject Terms: Asymptomatic bacteriuria, Biofilm, Cystitis, Metabolomics, Urinary tract infection, Uropathogenic Escherichia coli, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352340920307058; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/71d7fa60321f4ddf8a7ab5f6ee00ff88

Ion mobility conformational lipid atlas for high confidence lipidomics

Authors: Katrina L. Leaptrot, Jody C. May, James N. Dodds, John A. McLean

Source: Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e73941f0dfa94d8eb58fe11a18fa4a73

A Solution to Antifolate Resistance in Group B Streptococcus: Untargeted Metabolomics Identifies Human Milk Oligosaccharide-Induced Perturbations That Result in Potentiation of Trimethoprim

Authors: Schuyler A. Chambers, Rebecca E. Moore, Kelly M. Craft, Harrison C. Thomas, Rishub Das, Shannon D. Manning, Simona G. Codreanu, Stacy D. Sherrod, David M. Aronoff, John A. McLean, Jennifer A. Gaddy, Steven D. Townsend

Source: mBio, Vol 11, Iss 2 (2020)

Subject Terms: group B Streptococcus, human milk oligosaccharides, resistance, adjuvants, antifolate drugs, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2150-7511

Access URL: https://doaj.org/article/bed98e0db5e049edbda650b23600e004

Metabolomic Analysis Evidences That Uterine Epithelial Cells Enhance Blastocyst Development in a Microfluidic Device

Authors: Vanessa Mancini, Alexandra C. Schrimpe-Rutledge, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean, Helen M. Picton, Virginia Pensabene

Source: Cells, Vol 10, Iss 5, p 1194 (2021)

Subject Terms: embryo culture, microfluidics, metabolomics, Cytology, QH573-671

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4409/10/5/1194; https://doaj.org/toc/2073-4409

Access URL: https://doaj.org/article/f84d51cb67d847eb8e6dda7a4f367871

Translational Roadmap for the Organs-on-a-Chip Industry toward Broad Adoption

Authors: Vanessa Allwardt, Alexander J. Ainscough, Priyalakshmi Viswanathan, Stacy D. Sherrod, John A. McLean, Malcolm Haddrick, Virginia Pensabene

Source: Bioengineering, Vol 7, Iss 3, p 112 (2020)

Subject Terms: organ-on-a-chip, technology-led strategy, gap analysis, validation, translation, quality management, Technology, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2306-5354/7/3/112; https://doaj.org/toc/2306-5354

Access URL: https://doaj.org/article/be24056532d7483a8f65288698aa02ff

Uncovering the Importance of Peer-to-Peer Communication during the COVID-19 Pandemic: Rotating Chromatography Experiments to Overcome Limited Student Capacity

Authors: Kelly A. Richardson, Rachel A. Harris, Kimberly L. Anderson, Rena~ A.S. Robinson (ORCID 0000-0001-6307-8671), John A. McLean, Susan Denise Verberne-Sutton (ORCID 0000-0002-9766-2865)

Source: Journal of Chemical Education. 2023 100(3):1277-1282.

Peer Reviewed: Y

Page Count: 6

Descriptors: Chemistry, Science Instruction, COVID-19, Pandemics, Laboratory Procedures, Peer Relationship, Interpersonal Communication, Laboratory Experiments, Laboratory Equipment, Undergraduate Students, Technical Writing, Cooperative Learning, Peer Teaching

Factors That Influence Helical Preferences for Singly Charged Gas-Phase Peptide Ions: The Effects of Multiple Potential Charge-Carrying Sites.

Authors: Janel R. McLean¹, John A. McLean¹, Zhaoxiang Wu¹, Christopher Becker¹, Lisa M. Pérez¹, C. Nick Pace¹, J. Martin Scholtz¹, David H. Russell¹

Source: Journal of Physical Chemistry B. Jan2010, Vol. 114 Issue 2, p809-816. 8p.

Subject Terms: *IONIC mobility, *PEPTIDES, *PHASE equilibrium, *MASS spectrometry, *DIELECTRICS, *BINDING sites, *AMINO acid sequence, *ELECTRONIC structure

Olfactory learning in the rat pup: A model that may permit visualization of a mammalian memory trace.

Authors: John H McLean

Source: NeuroReport; Jul2004, Vol. 15 Issue 11, p1691-1697, 7p

Enhanced carbohydrate structural selectivity in ion mobility-mass spectrometry analyses by boronic acid derivatizationElectronic supplementary information (ESI) available: Systematic names and structures for the carbohydrates included in this study are provided, along with tabulated values of collision cross-section for underivatized and derivatized carbohydrates, respectively. See DOI: 10.1039/b810421b

Authors: Larissa S. Fenn¹, John A. McLean¹

Source: Chemical Communications. Nov2008, Vol. 2008 Issue 43, p5505-5507. 3p.

Subject Terms: *CARBOHYDRATES, *DERIVATIZATION, *CHEMICAL reactions, *ORGANIC acids, *MASS spectrometry, *ION mobility spectroscopy

Analysis of the neuromuscular deficits caused by STAM1 deficiency

Authors: John W. McLean, Mary VanHart, Madilyn P. McWilliams, Charlene B. Farmer, David K. Crossman, Rita M. Cowell, Julie A. Wilson, Scott M. Wilson

Source: Current Research in Neurobiology, Vol 7, Iss , Pp 100138- (2024)

Subject Terms: ESCRT-0, Ubiquitin, HGS, STAM1, Endosome, Synapse and NMJ, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2665945X24000159; https://doaj.org/toc/2665-945X

Access URL: https://doaj.org/article/dc9fe283857042a9a222a3f2404e0ed9