Robust Non-Negative Matrix Tri-Factorization with Dual Hyper-Graph Regularization

Authors: Jiyang Yu, Hangjun Che, Man-Fai Leung, Cheng Liu, Wenhui Wu, Zheng Yan

Source: Big Data Mining and Analytics, Vol 8, Iss 1, Pp 214-232 (2025)

Subject Terms: non-negative matrix tri-factorization (nmtf), l2,1-norm, dual hyper-graph regularization, co-clustering, Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://www.sciopen.com/article/10.26599/BDMA.2024.9020055; https://doaj.org/toc/2096-0654

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Protocol for predicting the single-cell network-based gene activity landscape during human B cell development

Authors: Xin Huang, Xuetong Hou, Yizhen Li, Jun J. Yang, Jiyang Yu

Source: STAR Protocols, Vol 6, Iss 1, Pp 103614- (2025)

Subject Terms: bioinformatics, immunology, single Cell, systems biology, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666166725000206; https://doaj.org/toc/2666-1667

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CYP3A5 unexpectedly regulates glucose metabolism through the AKT–TXNIP–GLUT1 axis in pancreatic cancer

Authors: Ming Shao, Qingfei Pan, Haiyan Tan, Jing Wu, Ha Won Lee, Andrew D. Huber, William C. Wright, Ji-Hoon Cho, Jiyang Yu, Junmin Peng, Taosheng Chen

Source: Genes and Diseases, Vol 11, Iss 4, Pp 101079- (2024)

Subject Terms: Cell migration, CYP3A5, Glucose metabolism, GLUT1, Pancreatic cancer, TXNIP, Medicine (General), R5-920, Genetics, QH426-470

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Relation: http://www.sciencedirect.com/science/article/pii/S2352304223003628; https://doaj.org/toc/2352-3042

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Adaptive Network Routing Technology for Near-Moon Space Cross-Domain Transmission

Authors: Jiyang Yu, Dan Huang, Wenjie Li, Xianjie Wang, Xiaolong Shi, Qizhi Xu

Source: Applied Sciences, Vol 14, Iss 22, p 10204 (2024)

Subject Terms: cross-domain, adaptive routing network, near-Moon space, sub-network cluster, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

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Relation: https://www.mdpi.com/2076-3417/14/22/10204; https://doaj.org/toc/2076-3417

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NetBID2 provides comprehensive hidden driver analysis

Authors: Xinran Dong, Liang Ding, Andrew Thrasher, Xinge Wang, Jingjing Liu, Qingfei Pan, Jordan Rash, Yogesh Dhungana, Xu Yang, Isabel Risch, Yuxin Li, Lei Yan, Michael Rusch, Clay McLeod, Koon-Kiu Yan, Junmin Peng, Hongbo Chi, Jinghui Zhang, Jiyang Yu

Source: Nature Communications, Vol 14, Iss 1, Pp 1-10 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/14c0f151bd884b528e374cdf295c69fb

Robust capped norm dual hyper-graph regularized non-negative matrix tri-factorization

Authors: Jiyang Yu, Baicheng Pan, Shanshan Yu, Man-Fai Leung

Source: Mathematical Biosciences and Engineering, Vol 20, Iss 7, Pp 12486-12509 (2023)

Subject Terms: non-negative matrix tri-factorization, capped norm, dual hyper-graph regularization, robust clustering, Biotechnology, TP248.13-248.65, Mathematics, QA1-939

File Description: electronic resource

Relation: https://doaj.org/toc/1551-0018

Access URL: https://doaj.org/article/8792e02f56014bbeb69a31e72ae401db

Ribonucleotide reductase subunit switching in hepatoblastoma drug response and relapse

Authors: Anthony Brown, Qingfei Pan, Li Fan, Emilie Indersie, Cheng Tian, Nikolai Timchenko, Liyuan Li, Baranda S. Hansen, Haiyan Tan, Meifen Lu, Junmin Peng, Shondra M. Pruett-Miller, Jiyang Yu, Stefano Cairo, Liqin Zhu

Source: Communications Biology, Vol 6, Iss 1, Pp 1-16 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/ae5989f069384abbaef73e2aa057eb83

Loss of phosphatase CTDNEP1 potentiates aggressive medulloblastoma by triggering MYC amplification and genomic instability

Authors: Zaili Luo, Dazhuan Xin, Yunfei Liao, Kalen Berry, Sean Ogurek, Feng Zhang, Liguo Zhang, Chuntao Zhao, Rohit Rao, Xinran Dong, Hao Li, Jianzhong Yu, Yifeng Lin, Guoying Huang, Lingli Xu, Mei Xin, Ryuichi Nishinakamura, Jiyang Yu, Marcel Kool, Stefan M. Pfister, Martine F. Roussel, Wenhao Zhou, William A. Weiss, Paul Andreassen, Q. Richard Lu

Source: Nature Communications, Vol 14, Iss 1, Pp 1-19 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/050dee8c5d78498a83433567aac6e737

Epigenetic activation of the FLT3 gene by ZNF384 fusion confers a therapeutic susceptibility in acute lymphoblastic leukemia

Authors: Xujie Zhao, Ping Wang, Jonathan D. Diedrich, Brandon Smart, Noemi Reyes, Satoshi Yoshimura, Jingliao Zhang, Wentao Yang, Kelly Barnett, Beisi Xu, Zhenhua Li, Xin Huang, Jiyang Yu, Kristine Crews, Allen Eng Juh Yeoh, Marina Konopleva, Chia-Lin Wei, Ching-Hon Pui, Daniel Savic, Jun J. Yang

Source: Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/d14b4f6c096c49f694347dc01d940e14

Smurf2 inhibition enhances chemotherapy and radiation sensitivity in non-small-cell lung cancer

Authors: Kunal R. Chaudhary, Connor J. Kinslow, Haiying Cheng, Jose M. Silva, Jiyang Yu, Tony. J. Wang, Tom K. Hei, Balazs Halmos, Simon K. Cheng

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-12 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/5ba9f57b36b3433298277f057b8373c5

Inhibition of mitochondrial complex I reverses NOTCH1-driven metabolic reprogramming in T-cell acute lymphoblastic leukemia

Authors: Natalia Baran, Alessia Lodi, Yogesh Dhungana, Shelley Herbrich, Meghan Collins, Shannon Sweeney, Renu Pandey, Anna Skwarska, Shraddha Patel, Mathieu Tremblay, Vinitha Mary Kuruvilla, Antonio Cavazos, Mecit Kaplan, Marc O. Warmoes, Diogo Troggian Veiga, Ken Furudate, Shanti Rojas-Sutterin, Andre Haman, Yves Gareau, Anne Marinier, Helen Ma, Karine Harutyunyan, May Daher, Luciana Melo Garcia, Gheath Al-Atrash, Sujan Piya, Vivian Ruvolo, Wentao Yang, Sriram Saravanan Shanmugavelandy, Ningping Feng, Jason Gay, Di Du, Jun J. Yang, Fieke W. Hoff, Marcin Kaminski, Katarzyna Tomczak, R. Eric Davis, Daniel Herranz, Adolfo Ferrando, Elias J. Jabbour, M. Emilia Di Francesco, David T. Teachey, Terzah M. Horton, Steven Kornblau, Katayoun Rezvani, Guy Sauvageau, Mihai Gagea, Michael Andreeff, Koichi Takahashi, Joseph R. Marszalek, Philip L. Lorenzi, Jiyang Yu, Stefano Tiziani, Trang Hoang, Marina Konopleva

Source: Nature Communications, Vol 13, Iss 1, Pp 1-20 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/3982d909df0b4071b01a6f0797433bde

Dim Staring Debris Targets Detection Method with Dense Long Trailing Star

Authors: Jiyang Yu, Dan Huang, Wenjie Li, Xianjie Wang, Xiaolong Shi

Source: Applied Sciences, Vol 13, Iss 16, p 9148 (2023)

Subject Terms: star trailing, debris detection, dim target, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

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Relation: https://www.mdpi.com/2076-3417/13/16/9148; https://doaj.org/toc/2076-3417

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An Optimization Method for Radar Anti-Jamming Strategy via Key Time Nodes

Authors: Cheng Feng, Xiongjun Fu, Jian Dong, Zhichun Zhao, Jiyang Yu, Teng Pan

Source: Remote Sensing, Vol 15, Iss 15, p 3716 (2023)

Subject Terms: radar, anti-jamming, game theory, Science

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Relation: https://www.mdpi.com/2072-4292/15/15/3716; https://doaj.org/toc/2072-4292

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MEF2C opposes Notch in lymphoid lineage decision and drives leukemia in the thymus

Authors: Kirsten Canté-Barrett, Mariska T. Meijer, Valentina Cordo’, Rico Hagelaar, Wentao Yang, Jiyang Yu, Willem K. Smits, Marloes E. Nulle, Joris P. Jansen, Rob Pieters, Jun J. Yang, Jody J. Haigh, Steven Goossens, Jules P.P. Meijerink

Source: JCI Insight, Vol 7, Iss 13 (2022)

Subject Terms: Hematology, Oncology, Medicine

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Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/c835850cc319446ebc02e28aeb7f5f1b

Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)

Authors: Timothy I. Shaw, Li Dong, Liqing Tian, Chenxi Qian, Yu Liu, Bensheng Ju, Anthony High, Kanisha Kavdia, Vishwajeeth R. Pagala, Bridget Shaner, Deqing Pei, John Easton, Laura J. Janke, Shaina N. Porter, Xiaotu Ma, Cheng Cheng, Shondra M. Pruett-Miller, John Choi, Jiyang Yu, Junmin Peng, Wei Gu, A. Thomas Look, James R. Downing, Jinghui Zhang

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/cb7c285f227c42abb04cd250bb2d752a

Matrix Chain Multiplication and Equivalent Reduced-Order Parallel Calculation Method for a Robotic Arm

Authors: Jiyang Yu, Dan Huang, Wenjie Li, Xianjie Wang, Xiaolong Shi

Source: Applied Sciences, Vol 13, Iss 3, p 1931 (2023)

Subject Terms: matrix chain multiplication, equivalent reduced order, robotic arm, forward and inverse kinematics solutions, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

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Relation: https://www.mdpi.com/2076-3417/13/3/1931; https://doaj.org/toc/2076-3417

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Real-Time Moving Ship Detection from Low-Resolution Large-Scale Remote Sensing Image Sequence

Authors: Jiyang Yu, Dan Huang, Xiaolong Shi, Wenjie Li, Xianjie Wang

Source: Applied Sciences, Vol 13, Iss 4, p 2584 (2023)

Subject Terms: optical satellite image, ship detection, convolutional neural networks, deep learning, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.mdpi.com/2076-3417/13/4/2584; https://doaj.org/toc/2076-3417

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Structure Tensor-Based Infrared Small Target Detection Method for a Double Linear Array Detector

Authors: Jinyan Gao, Luyuan Wang, Jiyang Yu, Zhongshi Pan

Source: Remote Sensing, Vol 14, Iss 19, p 4785 (2022)

Subject Terms: small moving target detection, double linear array detector, cloud edge removal, structure tensor, Science

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Relation: https://www.mdpi.com/2072-4292/14/19/4785; https://doaj.org/toc/2072-4292

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Genomic and Transcriptomic Analyses Reveals ZNF124 as a Critical Regulator in Highly Aggressive Medulloblastomas

Authors: Zaili Luo, Xinran Dong, Jianzhong Yu, Yong Xia, Kalen P. Berry, Rohit Rao, Lingli Xu, Ping Xue, Tong Chen, Yifeng Lin, Jiyang Yu, Guoying Huang, Hao Li, Wenhao Zhou, Q. Richard Lu

Source: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

Subject Terms: medulloblastoma, Asian cohort, whole exome sequencing, RNA-seq, subgroup-specific regulator, ZNF124, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.634056/full; https://doaj.org/toc/2296-634X

Access URL: https://doaj.org/article/117cd79fdaa344daa762f2449e610c24

Network Approaches for Dissecting the Immune System

Authors: Hao Shi, Koon-Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu

Source: iScience, Vol 23, Iss 8, Pp 101354- (2020)

Subject Terms: Biological Sciences, Immunology, Systems Biology, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004220305411; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/f3b46f4f141944398a2370a279e88dc6