A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.)

Authors: Tifeng Yang, Jingfang Dong, Xijuan Xiong, Longting Zhang, Jian Wang, Haifei Hu, Lian Zhou, Wu Yang, Yamei Ma, Hua Fu, Jiansong Chen, Wenhui Li, Shuai Nie, Ziqiang Liu, Bin Liu, Feng Wang, Junliang Zhao, Shaohong Zhang

Source: Rice, Vol 17, Iss 1, Pp 1-16 (2024)

Subject Terms: Genome-wide association analysis (GWAS), Quantitative trait loci (QTL), Shoot dry weight, Causal gene, Rice, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

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GWAS and Transcriptomic Analysis Identify OsRING315 as a New Candidate Gene Controlling Amylose Content and Gel Consistency in Rice

Authors: Shuai Nie, Luo Chen, Minhua Zheng, Jingfang Dong, Yamei Ma, Lian Zhou, Jian Wang, Jiansong Chen, Haifei Hu, Tifeng Yang, Junliang Zhao, Shaohong Zhang, Wu Yang

Source: Rice, Vol 17, Iss 1, Pp 1-14 (2024)

Subject Terms: Rice, Cooking quality, Genome-wide association study, Quantitative trait loci (QTL), Candidate gene, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/9ce3ba088a1b4cf4b31ddab5d4f5dfd1

Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice

Authors: Jian Wang, Haifei Hu, Xianya Jiang, Shaohong Zhang, Wu Yang, Jingfang Dong, Tifeng Yang, Yamei Ma, Lian Zhou, Jiansong Chen, Shuai Nie, Chuanguang Liu, Yuese Ning, Xiaoyuan Zhu, Bin Liu, Jianyuan Yang, Junliang Zhao

Source: Rice, Vol 17, Iss 1, Pp 1-14 (2024)

Subject Terms: Rice, Blast resistance, Pangenome-wide association study, Transcriptomic analysis, Candidate genes, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/54e77a9d51d74a4d8d39dbb81b76eddc

The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.)

Authors: Jingfang Dong, Yamei Ma, Haifei Hu, Jian Wang, Wu Yang, Hua Fu, Longting Zhang, Jiansong Chen, Lian Zhou, Wenhui Li, Shuai Nie, Ziqiang Liu, Junliang Zhao, Bin Liu, Tifeng Yang, Shaohong Zhang

Source: Rice, Vol 17, Iss 1, Pp 1-11 (2024)

Subject Terms: Shoot Length, Plant Height, Causal gene, Allele Mining, Pyramiding Effect, Rice, Plant culture, SB1-1110

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Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/936dd1c03b3d46208cd4ca038cdb9866

OsNRAMP2 facilitates Cd efflux from vacuoles and contributes to the difference in grain Cd accumulation between japonica and indica rice

Authors: Wu Yang, Luo Chen, Yamei Ma, Rui Hu, Jian Wang, Wenhui Li, Jingfang Dong, Tifeng Yang, Lian Zhou, Jiansong Chen, Dilin Liu, Ning Yu, Zhixia Liu, Lingyan Zhou, Shaohong Zhang, Junliang Zhao, Bin Liu

Source: Crop Journal, Vol 11, Iss 2, Pp 417-426 (2023)

Subject Terms: Rice (Oryza sativa L.), Cadmium, OsNRAMP2, Haplotype, Agriculture, Agriculture (General), S1-972

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Relation: http://www.sciencedirect.com/science/article/pii/S221451412200229X; https://doaj.org/toc/2214-5141

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Predicting Malignancy in Sonographic Features of Thyroid Nodules Using Convolutional Neural Networks ResNet50 Model

Authors: Jingfang Dong, MD, Jianyun Wang, MD, Xiangzhu Wang, MD

Source: Advanced Ultrasound in Diagnosis and Therapy, Vol 7, Iss 1, Pp 16-22 (2023)

Subject Terms: thyroid nodules, malignancy, sonographic feature, deep learning, convolutional neural networks, resnet50 model, Medical technology, R855-855.5, Medicine

File Description: electronic resource

Relation: http://www.journaladvancedultrasound.com:81/fileup/2576-2516/PDF/1680237742580-2128627791.pdf; https://doaj.org/toc/2576-2516

Access URL: https://doaj.org/article/fbdf43de99d6471ab7c644a318ff6415

A pangenome analysis pipeline provides insights into functional gene identification in rice

Authors: Jian Wang, Wu Yang, Shaohong Zhang, Haifei Hu, Yuxuan Yuan, Jingfang Dong, Luo Chen, Yamei Ma, Tifeng Yang, Lian Zhou, Jiansong Chen, Bin Liu, Chengdao Li, David Edwards, Junliang Zhao

Source: Genome Biology, Vol 24, Iss 1, Pp 1-22 (2023)

Subject Terms: Pangenome, Presence/absence variation, Genomic diversity, PAV-based GWAS, Biology (General), QH301-705.5, Genetics, QH426-470

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Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/f0ef88ee09504c548b01f6e86012bfd6

Screening of Indica-Japonica Specific Molecular Markers and Establishment of Discrimination System

Authors: Jingfang DONG, Xuezhong LI, Shaohong ZHANG, Bin LIU, Junliang ZHAO, Tifeng YANG

Source: Guangdong nongye kexue, Vol 49, Iss 9, Pp 10-19 (2022)

Subject Terms: molecular markers, indica-japonica nature, indica-japonica discrimination, cluster analysis, indica discrimination value, rice, Agriculture

File Description: electronic resource

Relation: http://gdnykx.cnjournals.org/gdnykx/ch/reader/view_abstract.aspx?file_no=202209002; https://doaj.org/toc/1004-874X

Access URL: https://doaj.org/article/aa216f5de71f44d2a921758ad61be181

Genome-wide association mapping and gene expression analysis reveal candidate genes for grain chalkiness in rice

Authors: Xing Huo, Jian Wang, Luo Chen, Hua Fu, Tifeng Yang, Jingfang Dong, Yamei Ma, Lian Zhou, Jiansong Chen, Dilin Liu, Bin Liu, Junliang Zhao, Shaohong Zhang, Wu Yang

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: rice, grain chalkiness, genome-wide association study, quantitative trait loci (QTL), candidate gene, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1184276/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/f80f9f87ad22441e96104b68c5bf639d

Overexpression of OsGF14C enhances salinity tolerance but reduces blast resistance in rice

Authors: Jingfang Dong, Xuezhong Li, Yamei Ma, Jianyuan Yang, Jiansong Chen, Wu Yang, Lian Zhou, Jian Wang, TiFeng Yang, Shaohong Zhang, Junliang Zhao, Qing Liu, Lingyan Zhou, Xiaoyuan Zhu, Bin Liu

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: OsGF14C, salinity, blast, Na+ Uptake, Lox2, rice, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1098855/full; https://doaj.org/toc/1664-462X

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Genome-Wide Identification, Expression and Functional Analysis Reveal the Involvement of FCS-Like Zinc Finger Gene Family in Submergence Response in Rice

Authors: Yamei Ma, Junliang Zhao, Hua Fu, Tifeng Yang, Jingfang Dong, Wu Yang, Luo Chen, Lian Zhou, Jian Wang, Bin Liu, Shaohong Zhang, David Edwards

Source: Rice, Vol 14, Iss 1, Pp 1-13 (2021)

Subject Terms: FLZ gene family, OsFLZ18, SnRK1A, Submergence, Rice, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/e4ed53aa04cc4427bebe8235e723815e

Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice

Authors: Wu Yang, Junliang Zhao, Shaohong Zhang, Luo Chen, Tifeng Yang, Jingfang Dong, Hua Fu, Yamei Ma, Lian Zhou, Jian Wang, Wei Liu, Qing Liu, Bin Liu

Source: Rice, Vol 14, Iss 1, Pp 1-12 (2021)

Subject Terms: GWAS, Bacterial blight, OsMYB21, Rice, Plant culture, SB1-1110

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Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/f0a8b010ee974644bd1a93adc8efeaa1

The OsOXO2, OsOXO3 and OsOXO4 Positively Regulate Panicle Blast Resistance in Rice

Authors: Jingfang Dong, Lian Zhou, Aiqing Feng, Shaohong Zhang, Hua Fu, Luo Chen, Junliang Zhao, Tifeng Yang, Wu Yang, Yamei Ma, Jian Wang, Xiaoyuan Zhu, Qing Liu, Bin Liu

Source: Rice, Vol 14, Iss 1, Pp 1-16 (2021)

Subject Terms: Rice (Oryza sativa L.), Panicle blast, OXO (oxalate oxidase), Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/ab72111350e142738d6e5ea840a3809b

Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice

Authors: Yamei Ma, Jian Wang, Tifeng Yang, Jingfang Dong, Wu Yang, Luo Chen, Lian Zhou, Jiansong Chen, Bin Liu, Shaohong Zhang, David Edwards, Junliang Zhao

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: rice, shoot length, genome-wide association study, OsCPS1, selection, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.976669/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/934c9a3e1ed043c5a225fecf7dc9c180

Mining candidate genes for rice cadmium accumulation in the shoot through a genome-wide association study and transcriptomic analysis

Authors: Jian Wang, Wu Yang, Shaohong Zhang, Jingfang Dong, Tifeng Yang, Yamei Ma, Lian Zhou, Jiansong Chen, Bin Liu, Junliang Zhao

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: rice, cadmium absorption, candidate gene, genome-wide association study, transcriptomic analysis, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.944529/full; https://doaj.org/toc/1664-8021

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The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.)

Authors: Tifeng Yang, Lian Zhou, Junliang Zhao, Jingfang Dong, Qing Liu, Hua Fu, Xingxue Mao, Wu Yang, Yamei Ma, Luo Chen, Jian Wang, Song Bai, Shaohong Zhang, Bin Liu

Source: Rice, Vol 13, Iss 1, Pp 1-15 (2020)

Subject Terms: Rice (Oryza sativa L.), Low temperature germinability, Quantitative trait locus, Candidate gene, Genome-wide association study, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12284-020-00434-z; https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/60fde4bebc0742a4898e717d66708848

Genome-Wide Association Study of Pericarp Color in Rice Using Different Germplasm and Phenotyping Methods Reveals Different Genetic Architectures

Authors: Wu Yang, Luo Chen, Junliang Zhao, Jian Wang, Wenhui Li, Tifeng Yang, Jingfang Dong, Yamei Ma, Lian Zhou, Jiansong Chen, Wei Wu, Shaohong Zhang, Bin Liu

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: rice, pericarp color, quantitative trait locus, candidate gene, genome-wide association study, Plant culture, SB1-1110

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Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.841191/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/8a797d11b63f4af8bd498f695fd9f918

Physiological and genome-wide gene expression analyses of cold-induced leaf rolling at the seedling stage in rice (Oryza sativa L.)

Authors: Jingfang Dong, Junliang Zhao, Shaohong Zhang, Tifeng Yang, Qing Liu, Xingxue Mao, Hua Fu, Wu Yang, Bin Liu

Source: Crop Journal, Vol 7, Iss 4, Pp 431-443 (2019)

Subject Terms: Agriculture, Agriculture (General), S1-972

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2214514119300480; https://doaj.org/toc/2214-5141

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The MKKK62-MKK3-MAPK7/14 module negatively regulates seed dormancy in rice

Authors: Xingxue Mao, Jianjun Zhang, Wuge Liu, Shijuan Yan, Qing Liu, Hua Fu, Junliang Zhao, Wenjie Huang, Jingfang Dong, Shaohong Zhang, Tifeng Yang, Wu Yang, Bin Liu, Feng Wang

Source: Rice, Vol 12, Iss 1, Pp 1-14 (2019)

Subject Terms: Rice (Oryza sativa L.), Pre-harvest sprouting, Dormancy, MAPK cascade, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12284-018-0260-z; https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/3927232139e848af8ea6cdd5f6f388c4

Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection

Authors: Junliang Zhao, Wu Yang, Shaohong Zhang, Tifeng Yang, Qin Liu, Jingfang Dong, Hua Fu, Xingxue Mao, Bin Liu

Source: Rice, Vol 11, Iss 1, Pp 1-15 (2018)

Subject Terms: Rice (Oryza sativa L.), Cadmium accumulation, Quantitative trait locus (QTL), Genome-wide association study (GWAS), Plant culture, SB1-1110

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12284-018-0254-x; https://doaj.org/toc/1939-8425; https://doaj.org/toc/1939-8433

Access URL: https://doaj.org/article/065ab73979734a2c8b57db0e16648df3