A validated in-house assay for HIV drug resistance mutation surveillance from dried blood spot specimens

Authors: Neufeld, Bronwyn, Munyuza, Chantal, Reimer, Alexandria, Capiña, Rupert, Lee, Emma R., Becker, Marissa, Sandstrom, Paul, Ji, Hezhao, Cholette, François

Source: In Journal of Virological Methods June 2024 327

Rectal microbiota diversity in Kenyan MSM is inversely associated with frequency of receptive anal sex, independent of HIV status

Authors: Gebrebrhan, Henok, Kambaran, Cheli, Sivro, Aida, Adhiambo, Wendy, Siele, Naomi, Becker, Michael G., Li, Jie, Choi, Sandra, Mwatelah, Ruth S., Reyes, N. Vincent, Akolo, Maureen, Njogu, Peter, Cholette, François, Ho, John, Kim, John, Peterson, Shelley W., Martin, Irene, Sandstrom, Paul, Mehta, Supriya D., Lorway, Robert R., Ball, T. Blake, Kimani, Joshua, Mclaren, Paul J., Ji, Hezhao, McKinnon, Lyle R.

Source: AIDS. 35(7):1091-1101

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194694246.0x000001&indx=1&recIds=ETOCvdc_100194694246.0x000001

A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance

Authors: Taylor, Tracy, Lee, Emma, Nykoluk, Mikaela, Enns, Eric, Liang, Binhua, Capina, Rupert, Gauthier, Marie-Krystel, Domselaar, Gary, Sandstrom, Paul, Brooks, James, Ji, Hezhao

Source: Scientific reports. 9(1):1-11

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100181224299.0x000001&indx=1&recIds=ETOCvdc_100181224299.0x000001

PCR Amplification Strategies Towards Full-length HIV-1 Genome Sequencing

Authors: Liu, Chao Chun, Ji, Hezhao

Source: Current HIV research. 16(2):98-105

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100078032384.0x000001&indx=1&recIds=ETOCvdc_100078032384.0x000001

Pretreatment HIV-drug resistance in Mexico and its impact on the effectiveness of first-line antiretroviral therapy: a nationally representative 2015 WHO survey

Authors: Ávila-Ríos, Santiago, García-Morales, Claudia, Matías-Florentino, Margarita, Romero-Mora, Karla A, Tapia-Trejo, Daniela, Quiroz-Morales, Verónica S, Reyes-Gopar, Helena, Ji, Hezhao, Sandstrom, Paul, Casillas-Rodríguez, Jesús, Sierra-Madero, Juan, León-Juárez, Eddie A, Valenzuela-Lara, Marisol, Magis-Rodríguez, Carlos, Uribe-Zuñiga, Patricia, Reyes-Terán, Gustavo

Source: In The Lancet HIV December 2016 3(12):e579-e591

Next generation sequencing of the hepatitis C virus NS5B gene reveals potential novel S282 drug resistance mutations

Authors: Ji, Hezhao, Kozak, Robert A., Biondi, Mia J., Pilon, Richard, Vallee, Dominic, Liang, Ben Binhua, La, David, Kim, John, Van Domselaar, Gary, Leonard, Lynne, Sandstrom, Paul, Brooks, James

Source: In Virology March 2015 477:1-9

Prevalence of Primary Drug Resistance Against HIV-1 Integrase Inhibitors in Canada

Authors: Ji, Hezhao, Patterson, Aileen, Taylor, Tracy, Rank, Claudia, Halverson, Jessica, Capina, Rupert, Brooks, James, Sandstrom, Paul

Source: Journal of acquired immune deficiency syndromes. 78(1):e1-e3

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182522215.0x000001&indx=1&recIds=ETOCvdc_100182522215.0x000001

Low abundance drug resistance variants in transmitted HIV drug resistance surveillance specimens identified using tagged pooled pyrosequencing

Authors: Ji, Hezhao, Liang, Ben, Li, Yang, Van Domselaar, Gary, Graham, Morag, Tyler, Shaun, Merks, Harriet, Sandstrom, Paul, Brooks, James

Source: In Journal of Virological Methods February 2013 187(2):314-320

Overview of the Analytes Applied in Genotypic HIV Drug Resistance Testing.

Authors: Ji, Hezhao, Sandstrom, Paul

Source: Pathogens; Jul2022, Vol. 11 Issue 7, pN.PAG-N.PAG, 14p

Subject Terms: ANTI-HIV agents, DRUG resistance, GENOTYPES, DRUG monitoring, AIDS

Point-of-Care Tests for HIV Drug Resistance Monitoring: Advances and Potentials.

Authors: Chua, Rayeil J., Capiña, Rupert, Ji, Hezhao

Source: Pathogens; Jul2022, Vol. 11 Issue 7, pN.PAG-N.PAG, 12p

Subject Terms: ANTI-HIV agents, DRUG resistance, DRUG monitoring, ANTIRETROVIRAL agents, TURNAROUND time

Expansion of cytotoxic tissue-resident CD8⁺ T cells and CCR6⁺CD161⁺ CD4⁺ T cells in the nasal mucosa following mRNA COVID-19 vaccination.

Authors: Ssemaganda, Aloysious, Nguyen, Huong Mai, Nuhu, Faisal, Jahan, Naima, Card, Catherine M., Kiazyk, Sandra, Severini, Giulia, Keynan, Yoav, Su, Ruey-Chyi, Ji, Hezhao, Abrenica, Bernard, McLaren, Paul J., Ball, T. Blake, Bullard, Jared, Van Caeseele, Paul, Stein, Derek, McKinnon, Lyle R.

Source: Nature Communications; 6/10/2022, Vol. 13 Issue 1, p1-9, 9p

Subject Terms: NASAL mucosa, COVID-19 vaccines, CYTOTOXIC T cells, T cells, MESSENGER RNA, BLOOD cells, BLOOD flow, VIRUS diseases

Probe Capture Enrichment Methods for HIV and HCV Genome Sequencing and Drug Resistance Genotyping.

Authors: Munyuza, Chantal, Ji, Hezhao, Lee, Emma R.

Source: Pathogens; Jun2022, Vol. 11 Issue 6, p693-N.PAG, 11p

Subject Terms: DRUG resistance, GENETIC variation, NUCLEIC acid hybridization, HEPATITIS C virus, ANTI-HIV agents, HIV

CAVES: A Novel Tool for Comparative Analysis of Variant Epitope Sequences.

Authors: Li, Katherine, Lowey, Connor, Sandstrom, Paul, Ji, Hezhao

Source: Viruses (1999-4915); Jun2022, Vol. 14 Issue 6, pN.PAG-N.PAG, 13p

Subject Terms: GRAPHICAL user interfaces, COMPARATIVE studies, HUMAN error, SARS-CoV-2, VIDEO coding, SOURCE code

Current Research on HIV Drug Resistance—A Topical Collection with " Pathogens ".

Authors: Ji, Hezhao

Source: Pathogens; Sep2022, Vol. 11 Issue 9, pN.PAG-N.PAG, 3p

Pyrosequencing Dried Blood Spots Reveals Differences in HIV Drug Resistance between Treatment Naïve and Experienced Patients.

Authors: Ji, Hezhao¹, Li, Yang¹, Liang, Binhua^2,3, Pilon, Richard¹, MacPherson, Paul⁴, Bergeron, Michèle¹, Kim, John¹, Graham, Morag^3,5, Van Domselaar, Gary², Sandstrom, Paul¹, Brooks, James¹ james_brooks@phac-aspc.gc.ca

Source: PLoS ONE. Feb2013, Vol. 8 Issue 2, p1-6. 6p.

Subject Terms: *HIV infections, *THERAPEUTICS, *ANTIRETROVIRAL agents, *BLOOD testing, *DRUG resistance, *COMPUTATIONAL biology, *SEXUALLY transmitted diseases, *SEQUENCE analysis

Reduced HIV-1 long terminal repeat transcription in subjects with protective interferon regulatory factor-1 genotype: A potential mechanism mediating resistance to infection by HIV-1.

Authors: Ji, Hezhao¹ (AUTHOR) hezhao_ji@phac-aspc.gc.ca, Ball, Terry Blake¹ (AUTHOR), Ao, Zhujun¹ (AUTHOR), Kimani, Joshua² (AUTHOR), Yao, Xiaojian¹ (AUTHOR), Plummer, Francis Allan^1,3 (AUTHOR)

Source: Scandinavian Journal of Infectious Diseases. 2010, Vol. 42 Issue 5, p389-394. 6p. 1 Diagram, 2 Graphs.

Subject Terms: *HIV infections, *INTERFERONS, *GENETIC transcription, *GENETIC polymorphisms, *KENYANS

Human interferon regulatory factor-1 gene and its promoter sequences revealed by population-based complete gene sequencing.

Authors: JI, Hezhao¹, Ball, Terry B.¹, Liang, Ben B.¹, Kimani, Joshua², Plummer, Francis A.¹

Source: DNA Sequence. Jun2008, Vol. 19 Issue 3, p326-331. 6p. 2 Diagrams, 1 Chart.

Subject Terms: *NUCLEOTIDES, *NUCLEOTIDE sequence, *PROMOTERS (Genetics), *IMMUNITY, *DATA analysis

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