A multimodal characterization of low-dimensional thalamocortical structural connectivity patterns

Authors: Alexandra John, Meike D. Hettwer, H. Lina Schaare, Amin Saberi, Şeyma Bayrak, Bin Wan, Jessica Royer, Boris C. Bernhardt, Sofie L. Valk

Source: Communications Biology, Vol 8, Iss 1, Pp 1-15 (2025)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/46b906a3b82e4e8a9e9b345460d850e1

Microstructural asymmetry in the human cortex

Authors: Bin Wan, Amin Saberi, Casey Paquola, H. Lina Schaare, Meike D. Hettwer, Jessica Royer, Alexandra John, Lena Dorfschmidt, Şeyma Bayrak, Richard A. I. Bethlehem, Simon B. Eickhoff, Boris C. Bernhardt, Sofie L. Valk

Source: Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e06149ddaf824232bd40b434b10e857d

Temporal Lobe Epilepsy Perturbs the Brain‐Wide Excitation‐Inhibition Balance: Associations with Microcircuit Organization, Clinical Parameters, and Cognitive Dysfunction

Authors: Ke Xie, Jessica Royer, Raul Rodriguez‐Cruces, Linda Horwood, Alexander Ngo, Thaera Arafat, Hans Auer, Ella Sahlas, Judy Chen, Yigu Zhou, Sofie L. Valk, Seok‐Jun Hong, Birgit Frauscher, Raluca Pana, Andrea Bernasconi, Neda Bernasconi, Luis Concha, Boris C. Bernhardt

Source: Advanced Science, Vol 12, Iss 9, Pp n/a-n/a (2025)

Subject Terms: cognitive impairment, excitation/inhibition imbalance, microcircuit perturbation, multimodal MRI, temporal lobe epilepsy, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/d0b11248b2994fe09c86a8a34e0c2ca9

From histology to macroscale function in the human amygdala

Authors: Hans Auer, Donna Gift Cabalo, Raúl Rodríguez-Cruces, Oualid Benkarim, Casey Paquola, Jordan DeKraker, Yezhou Wang, Sofie Louise Valk, Boris C Bernhardt, Jessica Royer

Source: eLife, Vol 13 (2025)

Subject Terms: amygdala, histology, radiomics, structure-function, multimodal MRI, microstructure, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/101950; https://doaj.org/toc/2050-084X

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Structural brain basis of latent factors of executive functions in childhood

Authors: Yongjing Li, Keertana Ganesan, Claire R. Smid, Abigail Thompson, Roser Cañigueral, Jessica Royer, Boris Bernhardt, Nikolaus Steinbeis

Source: Developmental Cognitive Neuroscience, Vol 71, Iss , Pp 101504- (2025)

Subject Terms: Executive functions, Cognitive control, Latent factors, Childhood, Brain Structure, Neurophysiology and neuropsychology, QP351-495

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1878929324001658; https://doaj.org/toc/1878-9293

Access URL: https://doaj.org/article/1b4569ab481c43f194eafdb154b61818

ANPHY-Sleep: an Open Sleep Database from Healthy Adults Using High-Density Scalp Electroencephalogram

Authors: Xiaoyan Wei, Tamir Avigdor, Alyssa Ho, Erica Minato, Alfonso Garcia-Asensi, Jessica Royer, Yingqi Laetitia Wang, Vojtech Travnicek, Katharina Schiller, Boris C. Bernhardt, Birgit Frauscher

Source: Scientific Data, Vol 11, Iss 1, Pp 1-10 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/97704c1bdc1c4e66beb316043b97525d

Multimodal neural correlates of childhood psychopathology

Authors: Jessica Royer, Valeria Kebets, Camille Piguet, Jianzhong Chen, Leon Qi Rong Ooi, Matthias Kirschner, Vanessa Siffredi, Bratislav Misic, BT Thomas Yeo, Boris C Bernhardt

Source: eLife, Vol 13 (2024)

Subject Terms: psychopathology, development, transdiagnostic, multimodal imaging, multivariate, brain gradients, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/87992; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/6dba493a330c405fa71ad3e2ca7177a8

Comparison of different group-level templates in gradient-based multimodal connectivity analysis

Authors: Sunghun Kim, Seulki Yoo, Ke Xie, Jessica Royer, Sara Larivière, Kyoungseob Byeon, Jong Eun Lee, Yeongjun Park, Sofie L. Valk, Boris C. Bernhardt, Seok-Jun Hong, Hyunjin Park, Bo-yong Park

Source: Harvard Data Science Review (2024)

Subject Terms: Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/2644-2353

Access URL: https://doaj.org/article/d0b1f1f2f7c94fe48dd2f880151373b1

Variation in spatial dependencies across the cortical mantle discriminates the functional behaviour of primary and association cortex

Authors: Robert Leech, Reinder Vos De Wael, František Váša, Ting Xu, R. Austin Benn, Robert Scholz, Rodrigo M. Braga, Michael P. Milham, Jessica Royer, Boris C. Bernhardt, Emily J. H. Jones, Elizabeth Jefferies, Daniel S. Margulies, Jonathan Smallwood

Source: Nature Communications, Vol 14, Iss 1, Pp 1-11 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/c1f4bd43b7084dfeb9fd0dcbc2de28ef

The human brain connectome weighted by the myelin content and total intra-axonal cross-sectional area of white matter tracts

Authors: Mark C. Nelson, Jessica Royer, Wen Da Lu, Ilana R. Leppert, Jennifer S. W. Campbell, Simona Schiavi, Hyerang Jin, Shahin Tavakol, Reinder Vos de Wael, Raul Rodriguez-Cruces, G. Bruce Pike, Boris C. Bernhardt, Alessandro Daducci, Bratislav Misic, Christine L. Tardif

Source: Harvard Data Science Review, Vol 7, Iss 4 (2023)

Subject Terms: Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/2644-2353

Access URL: https://doaj.org/article/cb6b0702ab604ce1817f4f6a07cabdb1

An Open MRI Dataset For Multiscale Neuroscience

Authors: Jessica Royer, Raúl Rodríguez-Cruces, Shahin Tavakol, Sara Larivière, Peer Herholz, Qiongling Li, Reinder Vos de Wael, Casey Paquola, Oualid Benkarim, Bo-yong Park, Alexander J. Lowe, Daniel Margulies, Jonathan Smallwood, Andrea Bernasconi, Neda Bernasconi, Birgit Frauscher, Boris C. Bernhardt

Source: Scientific Data, Vol 9, Iss 1, Pp 1-12 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/bd7b9e09eca44a20a98a9d4b9df9135d

Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression

Authors: Sara Larivière, Jessica Royer, Raúl Rodríguez-Cruces, Casey Paquola, Maria Eugenia Caligiuri, Antonio Gambardella, Luis Concha, Simon S. Keller, Fernando Cendes, Clarissa L. Yasuda, Leonardo Bonilha, Ezequiel Gleichgerrcht, Niels K. Focke, Martin Domin, Felix von Podewills, Soenke Langner, Christian Rummel, Roland Wiest, Pascal Martin, Raviteja Kotikalapudi, Terence J. O’Brien, Benjamin Sinclair, Lucy Vivash, Patricia M. Desmond, Elaine Lui, Anna Elisabetta Vaudano, Stefano Meletti, Manuela Tondelli, Saud Alhusaini, Colin P. Doherty, Gianpiero L. Cavalleri, Norman Delanty, Reetta Kälviäinen, Graeme D. Jackson, Magdalena Kowalczyk, Mario Mascalchi, Mira Semmelroch, Rhys H. Thomas, Hamid Soltanian-Zadeh, Esmaeil Davoodi-Bojd, Junsong Zhang, Gavin P. Winston, Aoife Griffin, Aditi Singh, Vijay K. Tiwari, Barbara A. K. Kreilkamp, Matteo Lenge, Renzo Guerrini, Khalid Hamandi, Sonya Foley, Theodor Rüber, Bernd Weber, Chantal Depondt, Julie Absil, Sarah J. A. Carr, Eugenio Abela, Mark P. Richardson, Orrin Devinsky, Mariasavina Severino, Pasquale Striano, Domenico Tortora, Erik Kaestner, Sean N. Hatton, Sjoerd B. Vos, Lorenzo Caciagli, John S. Duncan, Christopher D. Whelan, Paul M. Thompson, Sanjay M. Sisodiya, Andrea Bernasconi, Angelo Labate, Carrie R. McDonald, Neda Bernasconi, Boris C. Bernhardt

Source: Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/42a2adc39a114a5faf720bcffa41fabd

Genetic and phylogenetic uncoupling of structure and function in human transmodal cortex

Authors: Sofie L. Valk, Ting Xu, Casey Paquola, Bo-yong Park, Richard A. I. Bethlehem, Reinder Vos de Wael, Jessica Royer, Shahrzad Kharabian Masouleh, Şeyma Bayrak, Peter Kochunov, B. T. Thomas Yeo, Daniel Margulies, Jonathan Smallwood, Simon B. Eickhoff, Boris C. Bernhardt

Source: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b951d28737f24adc81461cf213d7e212

Micapipe: A pipeline for multimodal neuroimaging and connectome analysis

Authors: Raúl R. Cruces, Jessica Royer, Peer Herholz, Sara Larivière, Reinder Vos de Wael, Casey Paquola, Oualid Benkarim, Bo-yong Park, Janie Degré-Pelletier, Mark C. Nelson, Jordan DeKraker, Ilana R. Leppert, Christine Tardif, Jean-Baptiste Poline, Luis Concha, Boris C. Bernhardt

Source: NeuroImage, Vol 263, Iss , Pp 119612- (2022)

Subject Terms: Multimoda, MRI, Connectome, Neuroimaging, Multiscale, BIDS, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1053811922007273; https://doaj.org/toc/1095-9572

Access URL: https://doaj.org/article/aa5a9217534340daa16e2669ed41cef3

Connectivity alterations in autism reflect functional idiosyncrasy

Authors: Oualid Benkarim, Casey Paquola, Bo-yong Park, Seok-Jun Hong, Jessica Royer, Reinder Vos de Wael, Sara Lariviere, Sofie Valk, Danilo Bzdok, Laurent Mottron, Boris C. Bernhardt

Source: Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/1c8947b95124416e8b210718ef59d925

A Riemannian approach to predicting brain function from the structural connectome

Authors: Oualid Benkarim, Casey Paquola, Bo-yong Park, Jessica Royer, Raúl Rodríguez-Cruces, Reinder Vos de Wael, Bratislav Misic, Gemma Piella, Boris C. Bernhardt

Source: NeuroImage, Vol 257, Iss , Pp 119299- (2022)

Subject Terms: Functional connectivity, Structural connectome, Diffusion maps, Manifold optimization, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1053811922004189; https://doaj.org/toc/1095-9572

Access URL: https://doaj.org/article/ef94616e043a45a6bf3bb9586064f311

Multimodal connectome biomarkers of cognitive and affective dysfunction in the common epilepsies

Authors: Raul Rodriguez-Cruces, Jessica Royer, Sara Larivière, Dani S. Bassett, Lorenzo Caciagli, Boris C. Bernhardt

Source: Harvard Data Science Review, Vol 6, Iss 2 (2022)

Subject Terms: Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/2644-2353

Access URL: https://doaj.org/article/8c2d9faef49743eda49d2ddaaa5215e6

Perceptual coupling and decoupling of the default mode network during mind-wandering and reading

Authors: Meichao Zhang, Boris C Bernhardt, Xiuyi Wang, Dominika Varga, Katya Krieger-Redwood, Jessica Royer, Raúl Rodríguez-Cruces, Reinder Vos de Wael, Daniel S Margulies, Jonathan Smallwood, Elizabeth Jefferies

Source: eLife, Vol 11 (2022)

Subject Terms: default mode network, mind-wandering, reading, autobiographical memory, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/74011; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/d1dfa46828de41aaa4e4b9f2e7827c48

The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging

Authors: Casey Paquola, Jessica Royer, Lindsay B Lewis, Claude Lepage, Tristan Glatard, Konrad Wagstyl, Jordan DeKraker, Paule-J Toussaint, Sofie L Valk, Louis Collins, Ali R Khan, Katrin Amunts, Alan C Evans, Timo Dickscheid, Boris Bernhardt

Source: eLife, Vol 10 (2021)

Subject Terms: neuroimaging, histology, multi-modal, anatomy, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/70119; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/bc2bc788cd5d47e6ab1d41a2e97628b1

Signal diffusion along connectome gradients and inter-hub routing differentially contribute to dynamic human brain function

Authors: Bo-yong Park, Reinder Vos de Wael, Casey Paquola, Sara Larivière, Oualid Benkarim, Jessica Royer, Shahin Tavakol, Raul R. Cruces, Qiongling Li, Sofie L. Valk, Daniel S. Margulies, Bratislav Mišić, Danilo Bzdok, Jonathan Smallwood, Boris C. Bernhardt

Source: NeuroImage, Vol 224, Iss , Pp 117429- (2021)

Subject Terms: structural connectome, gradients, functional dynamics, Hidden Markov Model, multimodal imaging, diffusion MRI, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1053811920309149; https://doaj.org/toc/1095-9572

Access URL: https://doaj.org/article/c80ae928527e47dba8590918dc0a8a42