Analysis of polygenic selection in purebred and crossbred pig genomes using generation proxy selection mapping

Authors: Caleb J. Grohmann, Caleb M. Shull, Tamar E. Crum, Clint Schwab, Timothy J. Safranski, Jared E. Decker

Source: Genetics Selection Evolution, Vol 55, Iss 1, Pp 1-21 (2023)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/841560899e934d1f91ac7d2ccda4c1ae

Uncovering the architecture of selection in two Bos taurus cattle breeds

Authors: Troy N. Rowan, Robert D. Schnabel, Jared E. Decker

Source: Evolutionary Applications, Vol 17, Iss 2, Pp n/a-n/a (2024)

Subject Terms: cattle, polygenic selection, selection mapping, sweeps, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1752-4571

Access URL: https://doaj.org/article/65b37ff23f624331b04a80a5522c55ec

Genome-wide association and genotype by environment interactions for growth traits in U.S. Red Angus cattle

Authors: Johanna L. Smith, Miranda L. Wilson, Sara M. Nilson, Troy N. Rowan, Robert D. Schnabel, Jared E. Decker, Christopher M. Seabury

Source: BMC Genomics, Vol 23, Iss 1, Pp 1-22 (2022)

Subject Terms: GWAA, QTL, Genotype-by-environment interaction, Growth traits, Red Angus, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/d7fc19ce4baf445fa8abeaa756ca3917

Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle

Authors: Camila U. Braz, Troy N. Rowan, Robert D. Schnabel, Jared E. Decker

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-15 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4cc7e0a66b394fe6b975ef62db6ca75d

Development of a genetic evaluation for hair shedding in American Angus cattle to improve thermotolerance

Authors: Harly J. Durbin, Duc Lu, Helen Yampara-Iquise, Stephen P. Miller, Jared E. Decker

Source: Genetics Selection Evolution, Vol 52, Iss 1, Pp 1-14 (2020)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12711-020-00584-0; https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/1075fddf60c54bfc84b1a2c6fb7fa94f

Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle

Authors: Johanna L. Smith, Miranda L. Wilson, Sara M. Nilson, Troy N. Rowan, David L. Oldeschulte, Robert D. Schnabel, Jared E. Decker, Christopher M. Seabury

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-13 (2019)

Subject Terms: GWAA, QTL, Genotype-by-environment interaction, Growth traits, Gelbvieh, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/9ba5f168059945f0bedfdb60a55bfa1a

A multi-breed reference panel and additional rare variants maximize imputation accuracy in cattle

Authors: Troy N. Rowan, Jesse L. Hoff, Tamar E. Crum, Jeremy F. Taylor, Robert D. Schnabel, Jared E. Decker

Source: Genetics Selection Evolution, Vol 51, Iss 1, Pp 1-16 (2019)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/06441ff43ebc40baa2ac0b1c5a0aec40

QTL-mapping and genomic prediction for bovine respiratory disease in U.S. Holsteins using sequence imputation and feature selection

Authors: Jesse L. Hoff, Jared E. Decker, Robert D. Schnabel, Christopher M. Seabury, Holly L. Neibergs, Jeremy F. Taylor

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-15 (2019)

Subject Terms: Genomic prediction, Bovine respiratory disease, Genome sequence imputation, RNA-Seq, Quantitative trait locus, Feature selection, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-019-5941-5; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/2cf7aa554d554503ba74cc0514c26761

Taurine and Indicine Haplotype Representation in Advanced Generation Individuals From Three American Breeds

Authors: Tamar E. Crum, Robert D. Schnabel, Jared E. Decker, Jeremy F. Taylor

Source: Frontiers in Genetics, Vol 12 (2021)

Subject Terms: indicine, taurine, hybrids, American breeds, selection, haplotype, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.758394/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/1a84acf5c05743eb976b924a97bf1a21

Genetic ancestry, admixture, and population structure in rural Dominica

Authors: Monica H. Keith, Mark V. Flinn, Harly J. Durbin, Troy N. Rowan, Gregory E. Blomquist, Kristen H. Taylor, Jeremy F. Taylor, Jared E. Decker

Source: PLoS ONE, Vol 16, Iss 11 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8565749/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/12439a032a444ca3b5f4656a39b2736e

Genetic Basis of Blood-Based Traits and Their Relationship With Performance and Environment in Beef Cattle at Weaning

Authors: Josue Chinchilla-Vargas, Luke M. Kramer, John D. Tucker, Donald S. Hubbell, Jeremy G. Powell, Toby D. Lester, Elizabeth A. Backes, Karen Anschutz, Jared E. Decker, Kenneth J. Stalder, Max F. Rothschild, James E. Koltes

Source: Frontiers in Genetics, Vol 11 (2020)

Subject Terms: beef cattle, hemoglobin, weaning, heritability, GWAS - genome-wide association study, weaning weight, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fgene.2020.00717/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/8012dc01c47b4efbbd12bd47c3f91d06

Candidate lethal haplotypes and causal mutations in Angus cattle

Authors: Jesse L. Hoff, Jared E. Decker, Robert D. Schnabel, Jeremy F. Taylor

Source: BMC Genomics, Vol 18, Iss 1, Pp 1-11 (2017)

Subject Terms: Inbreeding, Autosomal recessives, Lethal Haplotypes, Phasing, Imputation, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-017-4196-2; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/4fdf0ba701e74463aa08868e0727bcfd

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size

Authors: David L. Oldeschulte, Yvette A. Halley, Miranda L. Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury

Source: G3: Genes, Genomes, Genetics, Vol 7, Iss 9, Pp 3047-3058 (2017)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/f9e2609835954c118001a2dc1bbbff04

Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle

Authors: Christopher M. Seabury, David L. Oldeschulte, Mahdi Saatchi, Jonathan E. Beever, Jared E. Decker, Yvette A. Halley, Eric K. Bhattarai, Maral Molaei, Harvey C. Freetly, Stephanie L. Hansen, Helen Yampara-Iquise, Kristen A. Johnson, Monty S. Kerley, JaeWoo Kim, Daniel D. Loy, Elisa Marques, Holly L. Neibergs, Robert D. Schnabel, Daniel W. Shike, Matthew L. Spangler, Robert L. Weaber, Dorian J. Garrick, Jeremy F. Taylor

Source: BMC Genomics, Vol 18, Iss 1, Pp 1-25 (2017)

Subject Terms: GWAS, QTL, Feed efficiency and growth, Beef Cattle, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-017-3754-y; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/ab8444be95cd4e528a0d73733447ffa2

Early cave art and ancient DNA record the origin of European bison

Authors: Julien Soubrier, Graham Gower, Kefei Chen, Stephen M. Richards, Bastien Llamas, Kieren J. Mitchell, Simon Y. W. Ho, Pavel Kosintsev, Michael S. Y. Lee, Gennady Baryshnikov, Ruth Bollongino, Pere Bover, Joachim Burger, David Chivall, Evelyne Crégut-Bonnoure, Jared E. Decker, Vladimir B. Doronichev, Katerina Douka, Damien A. Fordham, Federica Fontana, Carole Fritz, Jan Glimmerveen, Liubov V. Golovanova, Colin Groves, Antonio Guerreschi, Wolfgang Haak, Tom Higham, Emilia Hofman-Kamińska, Alexander Immel, Marie-Anne Julien, Johannes Krause, Oleksandra Krotova, Frauke Langbein, Greger Larson, Adam Rohrlach, Amelie Scheu, Robert D. Schnabel, Jeremy F. Taylor, Małgorzata Tokarska, Gilles Tosello, Johannes van der Plicht, Ayla van Loenen, Jean-Denis Vigne, Oliver Wooley, Ludovic Orlando, Rafał Kowalczyk, Beth Shapiro, Alan Cooper

Source: Nature Communications, Vol 7, Iss 1, Pp 1-7 (2016)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6f57da40be914ebaafe6e2d59c3f5a17

Correction to: Development of a genetic evaluation for hair shedding in American Angus cattle to improve thermotolerance

Authors: Harly J. Durbin, Duc Lu, Helen Yampara-Iquise, Stephen P. Miller, Jared E. Decker

Source: Genetics Selection Evolution, Vol 53, Iss 1, Pp 1-1 (2021)

Subject Terms: Animal culture, SF1-1100, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1297-9686

Access URL: https://doaj.org/article/7b63adc6a40940639a1575b6e74115cd

Exploring genetic variation and population structure in a threatened species, Noturus placidus, with whole-genome sequence data

Authors: Lynsey K Whitacre, Mark L Wildhaber, Gary S Johnson, Harly J Durbin, Troy N Rowan, Peoria Tribe, Robert D Schnabel, Tendai Mhlanga-Mutangadura, Vernon M Tabor, Daniel Fenner, Jared E Decker

Source: G3: Genes, Genomes, Genetics, Vol 12, Iss 4 (2022)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2160-1836

Access URL: https://doaj.org/article/f708b19d6d6f4d3685b8ea55051f7b2d

Powerful detection of polygenic selection and evidence of environmental adaptation in US beef cattle.

Authors: Troy N Rowan, Harly J Durbin, Christopher M Seabury, Robert D Schnabel, Jared E Decker

Source: PLoS Genetics, Vol 17, Iss 7, p e1009652 (2021)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/52b741b58b28422691c4f257b676af3e

Genetic ancestry, admixture, and population structure in rural Dominica.

Authors: Monica H Keith, Mark V Flinn, Harly J Durbin, Troy N Rowan, Gregory E Blomquist, Kristen H Taylor, Jeremy F Taylor, Jared E Decker

Source: PLoS ONE, Vol 16, Iss 11, p e0258735 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a244422f52524e4d9f261021613e38eb

CRUMBLER: A tool for the prediction of ancestry in cattle.

Authors: Tamar E Crum, Robert D Schnabel, Jared E Decker, Luciana C A Regitano, Jeremy F Taylor

Source: PLoS ONE, Vol 14, Iss 8, p e0221471 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/917ecec3989843f5bca1ee6c9b0b3e51