Phylogenetics, Epidemiology and Temporal Patterns of Dengue Virus in Araraquara, São Paulo State

Authors: Caio Santos de Souza, Giovana Santos Caleiro, Ingra Morales Claro, Jaqueline Goes de Jesus, Thaís Moura Coletti, Camila Alves Maia da Silva, Ângela Aparecida Costa, Marta Inenami, Andreia C. Ribeiro, Alvina Clara Felix, Anderson Vicente de Paula, Walter M. Figueiredo, Expedito José de Albuquerque Luna, Ester C. Sabino, Camila M. Romano

Source: Viruses, Vol 16, Iss 2, p 274 (2024)

Subject Terms: dengue virus, DENV-1, clade replacement, phylogeny, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/16/2/274; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/8e479b075e624254aac0639a041c175a

Lessons from a Multilaboratorial Task Force for Diagnosis of a Fatal Toxoplasmosis Outbreak in Captive Primates in Brazil

Authors: Francine Bittencourt Schiffler, Asheley Henrique Barbosa Pereira, Silvia Bahadian Moreira, Igor Falco Arruda, Filipe Romero Rebello Moreira, Mirela D’arc, Ingra Morales Claro, Thalita de Abreu Pissinatti, Liliane Tavares de Faria Cavalcante, Thamiris dos Santos Miranda, Matheus Augusto Calvano Cosentino, Renata Carvalho de Oliveira, Jorlan Fernandes, Matheus Ribeiro da Silva Assis, Jonathan Gonçalves de Oliveira, Thayssa Alves Coelho da Silva, Rafael Mello Galliez, Debora Souza Faffe, Jaqueline Goes de Jesus, Marise Sobreira Bezerra da Silva, Matheus Filgueira Bezerra, Orlando da Costa Ferreira Junior, Amilcar Tanuri, Terezinha Marta Castiñeiras, Renato Santana Aguiar, Nuno Rodrigues Faria, Alzira Paiva de Almeida, Alcides Pissinatti, Ester Cerdeira Sabino, Maria Regina Reis Amendoeira, Elba Regina Sampaio de Lemos, Daniel Guimarães Ubiali, André F. A. Santos

Source: Microorganisms, Vol 11, Iss 12, p 2888 (2023)

Subject Terms: public policy, parasitic infection, toxoplasmosis, neotropical primate, one health, veterinary pathology, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/12/2888; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/954220f0dcbd401f9edade1400ff5805

Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay

Authors: Tiago Gräf, Cynthia Vazquez, Marta Giovanetti, Fernanda de Bruycker-Nogueira, Vagner Fonseca, Ingra Morales Claro, Jaqueline Goes de Jesus, Andrea Gómez, Joilson Xavier, Marcos Cesar Lima de Mendonça, Shirley Villalba, Juan Torales, Maria Liz Gamarra, Julien Thézé, Ana Maria Bispo de Filippis, Vasco Azevedo, Tulio de Oliveira, Leticia Franco, Carlos F. Campelo de Albuquerque, Sandra Irala, Edward Charles Holmes, Jairo Andrés Méndez Rico, Luiz Carlos Junior Alcantara

Source: Emerging Infectious Diseases, Vol 27, Iss 5, Pp 1393-1404 (2021)

Subject Terms: genomic surveillance, chikungunya virus, dengue virus, nanopore sequencing, arboviruses, viruses, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/27/5/20-4244_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/a6bfd51485354a3ba07e2601b9b676b7

SEQUENCIAMENTO DO GENOMA COMPLETO DO VÍRUS DA DENGUE SOROTIPO 1 CIRCULANTES EM ARARAQUARA-SP

Authors: Caio Santos de Souza, Giovana Santos Caleiro, Alvina Clara Felix, Anderson Vicente de Paula, Ingra Morales Claro, Jaqueline Goes de Jesus, Walter M. Figueiredo, Andreia C. Ribeiro, Ester C. Sabino, Camila M. Romano

Source: Brazilian Journal of Infectious Diseases, Vol 26, Iss , Pp 102418- (2022)

Subject Terms: Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1413867022001052; https://doaj.org/toc/1413-8670

Access URL: https://doaj.org/article/c67232cc94e74d3db7688a9e50bbae4a

Characterization of insect-specific Culex flavivirus (Flaviviridae) nucleotide sequences in mosquitoes from urban parks in São Paulo, Brazil

Authors: Thaís de Moura Coletti, Camila Malta Romano, Paulo Roberto Urbinatti, Renildo Souza Teixeira, Leila Weiss de Almeida Pedrosa, Marcello Schiavo Nardi, Delsio Natal, Antônio Charlys da Costa, Jaqueline Goes de Jesus, Ingra Morales Claro, Ester Cerdeira Sabino, Steven S. Witkin, Mauro Toledo Marrelli, Licia Natal Fernandes

Source: Revista da Sociedade Brasileira de Medicina Tropical, Vol 55 (2022)

Subject Terms: Culex flavivirus, Insect-specific flavivirus, Mosquito, Urban park, Arctic medicine. Tropical medicine, RC955-962

File Description: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0037-86822022000100624&tlng=en; https://doaj.org/toc/1678-9849

Access URL: https://doaj.org/article/65c82a69971a4ee5a706b6284926fa8d

Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020

Authors: Ingra Morales Claro, Flavia Cristina da Silva Sales, Mariana Severo Ramundo, Darlan S. Candido, Camila A.M. Silva, Jaqueline Goes de Jesus, Erika R. Manuli, Cristina Mendes de Oliveira, Luciano Scarpelli, Gustavo Campana, Oliver G. Pybus, Ester Cerdeira Sabino, Nuno Rodrigues Faria, José Eduardo Levi

Source: Emerging Infectious Diseases, Vol 27, Iss 3, Pp 970-972 (2021)

Subject Terms: 2019 novel coronavirus disease, coronavirus disease, COVID-19, severe acute respiratory syndrome coronavirus 2, SARS-CoV-2, viruses, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/27/3/21-0038_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/cf0ba42a9c234af4a538c275e0313c3b

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

Authors: Chantal B F Vogels, Mallery I Breban, Isabel M Ott, Tara Alpert, Mary E Petrone, Anne E Watkins, Chaney C Kalinich, Rebecca Earnest, Jessica E Rothman, Jaqueline Goes de Jesus, Ingra Morales Claro, Giulia Magalhães Ferreira, Myuki A E Crispim, Brazil-UK CADDE Genomic Network, Lavanya Singh, Houriiyah Tegally, Ugochukwu J Anyaneji, Network for Genomic Surveillance in South Africa, Emma B Hodcroft, Christopher E Mason, Gaurav Khullar, Jessica Metti, Joel T Dudley, Matthew J MacKay, Megan Nash, Jianhui Wang, Chen Liu, Pei Hui, Steven Murphy, Caleb Neal, Eva Laszlo, Marie L Landry, Anthony Muyombwe, Randy Downing, Jafar Razeq, Tulio de Oliveira, Nuno R Faria, Ester C Sabino, Richard A Neher, Joseph R Fauver, Nathan D Grubaugh

Source: PLoS Biology, Vol 19, Iss 5, p e3001236 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/df6ae3b174fb4117b9adacb18f55fee4

Yellow fever transmission in non-human primates, Bahia, Northeastern Brazil.

Authors: Jaqueline Goes de Jesus, Tiago Gräf, Marta Giovanetti, Maria Angélica Mares-Guia, Joilson Xavier, Maricelia Lima Maia, Vagner Fonseca, Allison Fabri, Roberto Fonseca Dos Santos, Felicidade Mota Pereira, Leandro Ferraz Oliveira Santos, Luciana Reboredo de Oliveira da Silva, Zuinara Pereira Gusmão Maia, Jananci Xavier Gomes Cerqueira, Julien Thèze, Leandro Abade, Mirza de Carvalho Santana Cordeiro, Sintia Sacramento Cerqueira Torquato, Eloisa Bahia Santana, Neuza Santos de Jesus Silva, Rosemary Sarmento Oitiçica Dourado, Ademilson Brás Alves, Adeilde do Socorro Guedes, Pedro Macedo da Silva Filho, Nuno Rodrigues Faria, Carlos F Campelo de Albuquerque, André Luiz de Abreu, Alessandro Pecego Martins Romano, Julio Croda, Rodrigo Fabiano do Carmo Said, Gabriel Muricy Cunha, Jeane Magnavita da Fonseca Cerqueira, Arabela Leal E Silva de Mello, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara

Source: PLoS Neglected Tropical Diseases, Vol 14, Iss 8, p e0008405 (2020)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/cf6ac88a49214786994f6336399d3d7f

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Authors: Nathan D. Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L. Matteson, Jaqueline Goes De Jesus, Bradley J. Main, Amanda L. Tan, Lauren M. Paul, Doug E. Brackney, Saran Grewal, Nikos Gurfield, Koen K. A. Van Rompay, Sharon Isern, Scott F. Michael, Lark L. Coffey, Nicholas J. Loman, Kristian G. Andersen

Source: Genome Biology, Vol 20, Iss 1, Pp 1-19 (2019)

Subject Terms: Viral sequencing, Amplicon sequencing, Intrahost evolution, Zika, West Nile, SNP calling, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-018-1618-7; https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/24ff68cedc704adfa9db1173d023ac4c

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region

Authors: Marta Giovanetti, Nuno Rodrigues Faria, José Lourenço, Jaqueline Goes de Jesus, Joilson Xavier, Ingra Morales Claro, Moritz U.G. Kraemer, Vagner Fonseca, Simon Dellicour, Julien Thézé, Flavia da Silva Salles, Tiago Gräf, Paola Paz Silveira, Valdinete Alves do Nascimento, Victor Costa de Souza, Felipe Campos de Melo Iani, Emerson Augusto Castilho-Martins, Laura Nogueira Cruz, Gabriel Wallau, Allison Fabri, Flávia Levy, Joshua Quick, Vasco de Azevedo, Renato Santana Aguiar, Tulio de Oliveira, Camila Bôtto de Menezes, Marcia da Costa Castilho, Tirza Matos Terra, Marineide Souza da Silva, Ana Maria Bispo de Filippis, André Luiz de Abreu, Wanderson Kleber Oliveira, Julio Croda, Carlos F. Campelo de Albuquerque, Marcio R.T. Nunes, Ester Cerdeira Sabino, Nicholas Loman, Felipe Gomes Naveca, Oliver G. Pybus, Luiz Carlos Alcantara

Source: Cell Reports, Vol 30, Iss 7, Pp 2275-2283.e7 (2020)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124720301194; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/41a2c8c471e94d3ea06f15d33b6ddec4

Persistence of chikungunya ECSA genotype and local outbreak in an upper medium class neighborhood in Northeast Brazil.

Authors: Jaqueline Goes de Jesus, Gabriel da Luz Wallau, Maricelia Lima Maia, Joilson Xavier, Maria Aparecida Oliveira Lima, Vagner Fonseca, Alvaro Salgado de Abreu, Stephane Fraga de Oliveira Tosta, Helineide Ramos do Amaral, Italo Andrade Barbosa Lima, Paloma Viana Silva, Daiana Carlos Dos Santos, Aline Sousa de Oliveira, Siane Campos de Souza, Melissa Barreto Falcão, Erenilde Cerqueira, Laís Ceschini Machado, Mariana Carolina Sobral, Tatiana Maria Teodoro Rezende, Mylena Ribeiro Pereira, Felicidade Mota Pereira, Zuinara Pereira Gusmão Maia, Rafael Freitas de Oliveira França, André Luiz de Abreu, Carlos Frederico Campelo de Albuquerque E Melo, Nuno Rodrigues Faria, Rivaldo Venâncio da Cunha, Marta Giovanetti, Luiz Carlos Junior Alcantara

Source: PLoS ONE, Vol 15, Iss 1, p e0226098 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a84e9238fcd14308a4f0e81c37fb7a0a

Lipidomic Analysis Reveals Serum Alteration of Plasmalogens in Patients Infected With ZIKA Virus

Authors: Adriano Queiroz, Isabella Fernanda Dantas Pinto, Maricélia Lima, Marta Giovanetti, Jaqueline Goes de Jesus, Joilson Xavier, Fernanda Khouri Barreto, Gisele André Baptista Canuto, Helineide Ramos do Amaral, Ana Maria Bispo de Filippis, Denise Lima Mascarenhas, Melissa Barreto Falcão, Normeide Pedreira Santos, Vasco Ariston de Carvalho Azevedo, Marcos Yukio Yoshinaga, Sayuri Miyamoto, Luiz Carlos Junior Alcantara

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: Zika virus, serum lipidomics, plasmalogens, phosphatidylethanolamine, arbovirus, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.00753/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/40d37e72a1464141ac0c685498613268

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

Authors: Felipe Gomes Naveca, Ingra Claro, Marta Giovanetti, Jaqueline Goes de Jesus, Joilson Xavier, Felipe Campos de Melo Iani, Valdinete Alves do Nascimento, Victor Costa de Souza, Paola Paz Silveira, José Lourenço, Mauricio Santillana, Moritz U G Kraemer, Josh Quick, Sarah C Hill, Julien Thézé, Rodrigo Dias de Oliveira Carvalho, Vasco Azevedo, Flavia Cristina da Silva Salles, Márcio Roberto Teixeira Nunes, Poliana da Silva Lemos, Darlan da Silva Candido, Glauco de Carvalho Pereira, Marluce Aparecida Assunção Oliveira, Cátia Alexandra Ribeiro Meneses, Rodrigo Melo Maito, Claudeth Rocha Santa Brígida Cunha, Daniela Palha de Sousa Campos, Marcia da Costa Castilho, Thalita Caroline da Silva Siqueira, Tiza Matos Terra, Carlos F Campelo de Albuquerque, Laura Nogueira da Cruz, André Luis de Abreu, Divino Valerio Martins, Daniele Silva de Moraes Vanlume Simoes, Renato Santana de Aguiar, Sérgio Luiz Bessa Luz, Nicholas Loman, Oliver G Pybus, Ester C Sabino, Osnei Okumoto, Luiz Carlos Junior Alcantara, Nuno Rodrigues Faria

Source: PLoS Neglected Tropical Diseases, Vol 13, Iss 3, p e0007065 (2019)

Subject Terms: Arctic medicine. Tropical medicine, RC955-962, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1935-2727; https://doaj.org/toc/1935-2735

Access URL: https://doaj.org/article/eeb886097380403188f9b25a625123c8

Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil.

Authors: Joilson Xavier, Marta Giovanetti, Vagner Fonseca, Julien Thézé, Tiago Gräf, Allison Fabri, Jaqueline Goes de Jesus, Marcos Cesar Lima de Mendonça, Cintia Damasceno Dos Santos Rodrigues, Maria Angélica Mares-Guia, Carolina Cardoso Dos Santos, Stephane Fraga de Oliveira Tosta, Darlan Candido, Rita Maria Ribeiro Nogueira, André Luiz de Abreu, Wanderson Kleber Oliveira, Carlos F Campelo de Albuquerque, Alexandre Chieppe, Tulio de Oliveira, Patrícia Brasil, Guilherme Calvet, Patrícia Carvalho Sequeira, Nuno Rodrigues Faria, Ana Maria Bispo de Filippis, Luiz Carlos Junior Alcantara

Source: PLoS ONE, Vol 14, Iss 6, p e0217871 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f31aaba763f84bbeada175847a2ec13b

Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019

Authors: Jaqueline Goes de Jesus, Karina Rocha Dutra, Flavia Cristina da Silva Sales, Ingra Morales Claro, Ana Carolina Terzian, Darlan da Silva Candido, Sarah C Hill, Julien Thézé, Celeste Torres, Tatiana Lang D’Agostini, Alvina Clara Felix, Andreia F Negri Reis, Luiz Carlos Junior Alcantara, André L de Abreu, Júlio HR Croda, Wanderson K de Oliveira, Ana Maria Bispo de Filipis, Maria do Carmo Rodrigues dos Santos Camis, Camila Malta Romano, Nick J Loman, Oliver G Pybus, Ester Cerdeira Sabino, Mauricio L Nogueira, Nuno Rodrigues Faria

Source: Memorias do Instituto Oswaldo Cruz, Vol 115

Subject Terms: dengue 2, outbreak, genomic surveillance, lineage replacement, brazil, Microbiology, QR1-502, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0074-02762020000100317&lng=en&tlng=en; https://doaj.org/toc/0074-0276; https://doaj.org/toc/1678-8060

Access URL: https://doaj.org/article/c793bfa9b8134f28af0ea02c40d78c7f

Importation and early local transmission of COVID-19 in Brazil, 2020

Authors: Jaqueline Goes de Jesus, Claudio Sacchi, Darlan da Silva Candido, Ingra Morales Claro, Flávia Cristina Silva Sales, Erika Regina Manuli, Daniela Bernardes Borges da Silva, Terezinha Maria de Paiva, Margarete Aparecida Benega Pinho, Katia Correa de Oliveira Santos, Sarah Catherine Hill, Renato Santana Aguiar, Filipe Romero, Fabiana Cristina Pereira dos Santos, Claudia Regina Gonçalves, Maria do Carmo Timenetsky, Joshua Quick, Julio Henrique Rosa Croda, Wanderson de Oliveira, Andrew Rambaut, Oliver G. Pybus, Nicholas J. Loman, Ester Cerdeira Sabino, Nuno Rodrigues Faria

Source: Revista do Instituto de Medicina Tropical de São Paulo, Vol 62

Subject Terms: public health surveillance, covid-19, sars-cov-2, Arctic medicine. Tropical medicine, RC955-962, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0036-46652020000100218&lng=en&tlng=en; https://doaj.org/toc/0036-4665; https://doaj.org/toc/1678-9946

Access URL: https://doaj.org/article/6115a51b0e78449e863cc3795406234e

Retrospective Genomic Surveillance of Chikungunya Transmission in Minas Gerais State, Southeast Brazil

Authors: Hegger Fritsch, Marta Giovanetti, Joilson Xavier, Talita Emile Ribeiro Adelino, Vagner Fonseca, Jaqueline Góes de Jesus, Ronaldo de Jesus, Carla Freitas, Cassio Roberto Leonel Peterka, Carlos Frederico Campelo de Albuquerque, Ana Maria Bispo de Filippis, Rivaldo Venâncio da Cunha, Erniria Carvalhais Silva, Luiz Carlos Junior Alcantara, Felipe Campos de Melo Iani

Source: Microbiology Spectrum, Vol 10, Iss 5 (2022)

Subject Terms: CHIKV, genomic monitoring, southeast Brazil, Nanopore sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/ce697b4a16c54f749fd0f2ca7593e270

Dynamics of Early Establishment of SARS-CoV-2 VOC Omicron Lineages in Minas Gerais, Brazil

Authors: Mariane Talon de Menezes, Filipe Romero Rebello Moreira, Charles Whittaker, Franciele Martins Santos, Daniel Costa Queiroz, Victor Geddes, Paula Luize Camargos Fonseca, Jaqueline Góes de Jesus, Franciane Mendes-Oliveira, Valquíria Reis-Souza, Bibiana Santos, Danielle Alves Gomes Zauli, Aline Brito de Lima, Cristiane de Brito Mendonça, Luige Biciati Alvim, Joice do Prado Silva, Frederico Scott Varella Malta, Alessandro Clayton de Souza Ferreira, Nuno R. Faria, Ester Cerdeira Sabino, Renato Santana Aguiar

Source: Viruses, Vol 15, Iss 2, p 585 (2023)

Subject Terms: Omicron, SARS-CoV-2, genomic surveillance, variants of concern, viral evolution, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/15/2/585; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/f23062f2b6a146919573a2e4a4cb3752

SARS-CoV-2 reinfection caused by the P.1 lineage in Araraquara city, Sao Paulo State, Brazil

Authors: Camila Malta Romano, Alvina Clara Felix, Anderson Vicente de Paula, Jaqueline Góes de Jesus, Pamela S. Andrade, Darlan Cândido, Franciane M. de Oliveira, Andreia C. Ribeiro, Francini C. da Silva, Marta Inemami, Angela Aparecida Costa, Cibele O. D. Leal, Walter Manso Figueiredo, Claudio Sergio Pannuti, William M. de Souza, Nuno Rodrigues Faria, Ester Cerdeira Sabino

Source: Revista do Instituto de Medicina Tropical de São Paulo, Vol 63 (2021)

Subject Terms: SARS-CoV-2, COVID-19, Reinfection, Variants of concern, P.1 lineage, Arctic medicine. Tropical medicine, RC955-962, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0036-46652021000100505&tlng=en; https://doaj.org/toc/1678-9946

Access URL: https://doaj.org/article/1b62942006d84de5ae9868af59981908