Microbiome-based surveillance of zoonotic tick-borne pathogens from urban wild boars in Barcelona, 2022–2023

Authors: Laura Carrera-Faja, Elmira Ghadamnan, Iris Sarmiento, Jordi Manuel Cabrera-Gumbau, Mariette Viladomat Jasso, Josep Estruch, Daniel Borràs, Jaime Martínez-Urtaza, Johan Espunyes, Oscar Cabezón

Source: One Health, Vol 20, Iss , Pp 101022- (2025)

Subject Terms: Nanopore sequencing, Francisella, Rickettsia, Vector-borne disease, Wildlife, Zoonosis, Medicine (General), R5-920

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352771425000588; https://doaj.org/toc/2352-7714

Access URL: https://doaj.org/article/531107e695944c619ae5cffc07fb9122

Climate warming and increasing Vibrio vulnificus infections in North America

Authors: Elizabeth J. Archer, Craig Baker-Austin, Timothy J. Osborn, Natalia R. Jones, Jaime Martínez-Urtaza, Joaquín Trinanes, James D. Oliver, Felipe J. Colón González, Iain R. Lake

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-11 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/2923f88b8f61406f891401b57f8fc856

The fecal bacterial microbiome of the Kuhl’s pipistrelle bat (Pipistrellus kuhlii) reflects landscape anthropogenic pressure

Authors: Lourdes Lobato-Bailón, Manuel García-Ulloa, Andrés Santos, David Guixé, Jordi Camprodon, Xavier Florensa-Rius, Raúl Molleda, Robert Manzano, Maria P. Ribas, Johan Espunyes, Andrea Dias-Alves, Ignasi Marco, Lourdes Migura-Garcia, Jaime Martínez-Urtaza, Oscar Cabezón

Source: Animal Microbiome, Vol 5, Iss 1, Pp 1-14 (2023)

Subject Terms: Anthropogenic disturbance, Chiroptera, Wildlife, Conservation, Health indicator, Nanopore sequencing, Veterinary medicine, SF600-1100, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2524-4671

Access URL: https://doaj.org/article/dab7a29d2ce9467b96e2e064cd1a36e2

Comparative Genomic Analyses of Virulence and Antimicrobial Resistance in Citrobacter werkmanii, an Emerging Opportunistic Pathogen

Authors: José R. Aguirre-Sánchez, Beatriz Quiñones, José A. Ortiz-Muñoz, Rogelio Prieto-Alvarado, Inés F. Vega-López, Jaime Martínez-Urtaza, Bertram G. Lee, Cristóbal Chaidez

Source: Microorganisms, Vol 11, Iss 8, p 2114 (2023)

Subject Terms: Citrobacter, nosocomial infections, virulence, antimicrobial resistance, comparative genomics, emerging pathogens, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/8/2114; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/ca38d053f8cb4e91a7bc28662a6310aa

Prevalence and Genomic Diversity of Salmonella enterica Recovered from River Water in a Major Agricultural Region in Northwestern Mexico

Authors: Irvin González-López, José Andrés Medrano-Félix, Nohelia Castro-del Campo, Osvaldo López-Cuevas, Jean Pierre González-Gómez, José Benigno Valdez-Torres, José Roberto Aguirre-Sánchez, Jaime Martínez-Urtaza, Bruno Gómez-Gil, Bertram G. Lee, Beatriz Quiñones, Cristóbal Chaidez

Source: Microorganisms, Vol 10, Iss 6, p 1214 (2022)

Subject Terms: environmental microbiology, food safety, foodborne pathogen, genomics, river water, Salmonella, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/10/6/1214; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/2e595b57ee6f4f0fbf3f18dca49bebe7

Factores ambientales vinculados con la aparición y dispersión de las epidemias de Vibrio en América del Sur Environmental drivers of emergence and spreading of Vibrio epidemics in South America

Authors: Ronnie G. Gavilán, Jaime Martínez-Urtaza

Source: Revista Peruana de Medicina Experimental y Salud Pública, Vol 28, Iss 1, Pp 109-115 (2011)

Subject Terms: Vibrio Cholerae, Vibrio Parahaemolyticus, Epidemiología Ambiental, Fenómeno de El Niño, Vibriosis, Epidemiology, El Niño Phenomenon, Vibrio infections, Medicine, Medicine (General), R5-920

File Description: electronic resource

Relation: http://www.scielosp.org/scielo.php?script=sci_arttext&pid=S1726-46342011000100017; https://doaj.org/toc/1726-4634; https://doaj.org/toc/1726-4642

Access URL: https://doaj.org/article/144f1648e69d4867882bc73675bfbb9e

Epidemiology of Vibrio parahaemolyticus Outbreaks, Southern Chile

Authors: Erika Harth, Luis Matsuda, Cristina Hernández, Maria L. Rioseco, Jaime Romero, Narjol González-Escalona, Jaime Martínez-Urtaza, Romilio T. Espejo

Source: Emerging Infectious Diseases, Vol 15, Iss 2, Pp 163-168 (2009)

Subject Terms: Vibrio parahaemolyticus, shellfish, Chile, outbreaks, lateral transfer, research, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/15/2/07-1269_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/2b3a786369b049d08f05c0509aa32a7a

Microevolution of pandemic Vibrio parahaemolyticus assessed by the number of repeat units in short sequence tandem repeat regions.

Authors: Katherine García, Ronnie G Gavilán, Manfred G Höfle, Jaime Martínez-Urtaza, Romilio T Espejo

Source: PLoS ONE, Vol 7, Iss 1, p e30823 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3265528?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/d04ee9c9de314ca1841cdaa43705740c

Nationwide phylogenomic surveillance of Mycobacterium tuberculosis in Mexico reveals pathogenic and drug resistant signatures of the prevailing L4 sublineage

Authors: Ikuri Alvarez-Maya, Manuel Garcia-Ulloa, Armando Martinez-Guarneros, Carlos A. Vazquez-Chacon, Jaime Martinez-Urtaza

Source: Journal of Global Antimicrobial Resistance, Vol 41, Iss , Pp 224-232 (2025)

Subject Terms: MTB lineages, Molecular epidemiology, Lineage 4, Genomic surveillance, Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213716525000219; https://doaj.org/toc/2213-7165

Access URL: https://doaj.org/article/50554cba41474a3a8dfe7c2594dd022c

Evolutionary dynamics of the successful expansion of pandemic Vibrio parahaemolyticus ST3 in Latin America

Authors: Amy Marie Campbell, Ronnie G. Gavilan, Michel Abanto Marin, Chao Yang, Chris Hauton, Ronny van Aerle, Jaime Martinez-Urtaza

Source: Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/cd09fe1524824de1bc435c51f5c1da32

Climate change and Vibrio vulnificus dynamics: A blueprint for infectious diseases.

Authors: Jane M Jayakumar, Jaime Martinez-Urtaza, Kyle D Brumfield, Antarpreet S Jutla, Rita R Colwell, Otto X Cordero, Salvador Almagro-Moreno

Source: PLoS Pathogens, Vol 20, Iss 12, p e1012767 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/fc58f5101e2846a1a9734d10e457d2f3

Climate change and Vibrio vulnificus dynamics: A blueprint for infectious diseases

Authors: Jane M. Jayakumar, Jaime Martinez-Urtaza, Kyle D. Brumfield, Antarpreet S. Jutla, Rita R. Colwell, Otto X. Cordero, Salvador Almagro-Moreno

Source: PLoS Pathogens, Vol 20, Iss 12 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11649097/?tool=EBI; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/a67a960780b64b56a85f8812bdcf6695

Eco-Evolutionary Drivers of Vibrio parahaemolyticus Sequence Type 3 Expansion: Retrospective Machine Learning Approach

Authors: Amy Marie Campbell, Chris Hauton, Ronny van Aerle, Jaime Martinez-Urtaza

Source: JMIR Bioinformatics and Biotechnology, Vol 5, p e62747 (2024)

Subject Terms: Biotechnology, TP248.13-248.65, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://bioinform.jmir.org/2024/1/e62747; https://doaj.org/toc/2563-3570

Access URL: https://doaj.org/article/bd15d37380b74f1e8c2aeb0ca1fa1f22

Public health aspects of Vibrio spp. related to the consumption of seafood in the EU

Authors: EFSA Panel on Biological Hazards (BIOHAZ), Konstantinos Koutsoumanis, Ana Allende, Avelino Alvarez‐Ordóñez, Declan Bolton, Sara Bover‐Cid, Marianne Chemaly, Alessandra De Cesare, Lieve Herman, Friederike Hilbert, Roland Lindqvist, Maarten Nauta, Romolo Nonno, Luisa Peixe, Giuseppe Ru, Marion Simmons, Panagiotis Skandamis, Craig Baker‐Austin, Dominique Hervio‐Heath, Jaime Martinez‐Urtaza, Eva Sanjuán Caro, Eckhard Strauch, Anne Thébault, Beatriz Guerra, Winy Messens, Ancuta Cezara Simon, Rubén Barcia‐Cruz, Elisabetta Suffredini

Source: EFSA Journal, Vol 22, Iss 7, Pp n/a-n/a (2024)

Subject Terms: analytical methods, antimicrobial resistance, climate change, interventions, public health, risk assessment modelling, Nutrition. Foods and food supply, TX341-641, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://doaj.org/toc/1831-4732

Access URL: https://doaj.org/article/1321e910649145658357e72678dc8bf2

Decision-support tools to build climate resilience against emerging infectious diseases in Europe and beyond

Authors: Joacim Rocklöv, Jan C. Semenza, Shouro Dasgupta, Elizabeth J.Z. Robinson, Ahmed Abd El Wahed, Tilly Alcayna, Cristina Arnés-Sanz, Meghan Bailey, Till Bärnighausen, Frederic Bartumeus, Carme Borrell, Laurens M. Bouwer, Pierre-Antoine Bretonnière, Aditi Bunker, Chloe Chavardes, Kim R. van Daalen, João Encarnação, Nube González-Reviriego, Junwen Guo, Katie Johnson, Marion P.G. Koopmans, María Máñez Costa, Antonios Michaelakis, Tomás Montalvo, Anna Omazic, John R.B. Palmer, Raman Preet, Marina Romanello, Mohammad Shafiul Alam, Reina S. Sikkema, Marta Terrado, Marina Treskova, Diana Urquiza, Rachel Lowe, Henrik Sjodin, Zia Farooq, Maquines Sewe, Frances MacGuire, Evangelia Zavitsanou, Panos Milonas, Dimitrios Papachristos, Marina Bisia, Georgios Balatsos, Spyros Antonatos, Jaime Martinez-Urtaza, Joaquin Triñanes, Mark Williams, Berj Dekramanjian, Karl Broome, Otis Johnson, Laurens Bouwer, Maria Máñez Costa, Adriana Martin, Lola Kotova, Thea Wübbelmann, Fiona Walsh, Pascale Stiles, Jerome Baron, Charles Hatfield, Julian Heidecke, Pratik Singh, Francesco Bosello, Sara Mehryar, Pauline de Best, Tijmen Hartung, Ayat Abourashed, Jesus Bellver, Catuxa Cerecedo, Martín Lotto Bautista, Bruno Moreira de Carvalho, Chloe Fletcher, Julieta Rosenbluth, Marina Corradini, Jaume Ramon, Liam Patrick Brodie, Alba Llabres, Arianna Ceruti, Uwe Truyen, Sasha Rodrigues, Erik Ågren, Giulio Grandi, Stefan Widgren, Masud Parvage, Martin Bergström, Rashidul Haque, Wasif Ali Khan, Andrea Valsecchi, Laura Barahona, Elisenda Realp, Stephan de Roode

Source: The Lancet Regional Health. Europe, Vol 32, Iss , Pp 100701- (2023)

Subject Terms: Climate change, Infectious disease, One Health, Planetary health, Human health, Climate policy, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666776223001205; https://doaj.org/toc/2666-7762

Access URL: https://doaj.org/article/1ea6f8bbd2ad49fcb353371a756337e4

Tracking the impacts of climate change on human health via indicators: lessons from the Lancet Countdown

Authors: Claudia Di Napoli, Alice McGushin, Marina Romanello, Sonja Ayeb-Karlsson, Wenjia Cai, Jonathan Chambers, Shouro Dasgupta, Luis E. Escobar, Ilan Kelman, Tord Kjellstrom, Dominic Kniveton, Yang Liu, Zhao Liu, Rachel Lowe, Jaime Martinez-Urtaza, Celia McMichael, Maziar Moradi-Lakeh, Kris A. Murray, Mahnaz Rabbaniha, Jan C. Semenza, Liuhua Shi, Meisam Tabatabaei, Joaquin A. Trinanes, Bryan N. Vu, Chloe Brimicombe, Elizabeth J. Robinson

Source: BMC Public Health, Vol 22, Iss 1, Pp 1-8 (2022)

Subject Terms: Climate change, Public health, Indicators, Climate data, Policy making, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2458

Access URL: https://doaj.org/article/10daa023c819442cac4ef90313d01ae2

Revealing Genomic Insights of the Unexplored Porcine Pathogen Actinobacillus pleuropneumoniae Using Whole Genome Sequencing

Authors: Judith Guitart-Matas, Narjol Gonzalez-Escalona, Meghan Maguire, Anna Vilaró, Jaime Martinez-Urtaza, Lorenzo Fraile, Lourdes Migura-Garcia

Source: Microbiology Spectrum, Vol 10, Iss 4 (2022)

Subject Terms: Actinobacillus, whole genome sequencing, swine, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/fc1d7c5b173b4c34900d1b776a160200

Global Expansion of Pacific Northwest Vibrio parahaemolyticus Sequence Type 36

Authors: Michel Abanto, Ronnie G. Gavilan, Craig Baker-Austin, Narjol Gonzalez-Escalona, Jaime Martinez-Urtaza

Source: Emerging Infectious Diseases, Vol 26, Iss 2, Pp 323-326 (2020)

Subject Terms: foodborne pathogens, outbreak, genomic epidemiology, Vibrio infections, bacteria, ST36, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/26/2/19-0362_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/41a21c4e42024fa8a8d20e6c1a607669

Computational methods for 16S metabarcoding studies using Nanopore sequencing data

Authors: Andres Santos, Ronny van Aerle, Leticia Barrientos, Jaime Martinez-Urtaza

Source: Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 296-305 (2020)

Subject Terms: Third generation sequencing, MinION, Microbial diversity, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037019303745; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/0f6dd2ee06c843cca7315af9dd10f87d

Future scenarios of risk of Vibrio infections in a warming planet: a global mapping study

Authors: Joaquin Trinanes, PhD, Jaime Martinez-Urtaza, ProfPhD

Source: The Lancet Planetary Health, Vol 5, Iss 7, Pp e426-e435 (2021)

Subject Terms: Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2542519621001698; https://doaj.org/toc/2542-5196

Access URL: https://doaj.org/article/f6c17cfb4187497e9494688652d82a47