Integrated differential analysis of multi-omics data using a joint mixture model: idiffomix

Authors: Majumdar, Koyel, Jaffrézic, Florence, Rau, Andrea, Gormley, Isobel Claire, Murphy, Thomas Brendan

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2412.17511

A novel family of beta mixture models for the differential analysis of DNA methylation data: an application to prostate cancer

Authors: Majumdar, Koyel, Silva, Romina, Perry, Antoinette Sabrina, Watson, Ronald William, Rau, Andrea, Jaffrezic, Florence, Murphy, Thomas Brendan, Gormley, Isobel Claire

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2211.01938

Specific Milk Composition of miR-30b Transgenic Mice Associated with Early Duodenum Maturation in Offspring with Lasting Consequences for Growth

Authors: Le Guillou, Sandrine, Ciobotaru, Céline, Laubier, Johann, Castille, Johan, Aujean, Etienne, Hue-Beauvais, Cathy, Cherbuy, Claire, Liuu, Sophie, Henry, Céline, David, Agnès, Jaffrezic, Florence, Laloë, Denis, Charlier, Madia, Alexandre-Gouabau, Marie-Cécile, Le Provost, Fabienne

Source: In The Journal of Nutrition October 2023 153(10):2808-2826

A novel family of beta mixture models for the differential analysis of DNA methylation data: An application to prostate cancer.

Authors: Majumdar, Koyel, Silva, Romina, Perry, Antoinette Sabrina, Watson, Ronald William, Rau, Andrea, Jaffrezic, Florence, Murphy, Thomas Brendan, Gormley, Isobel Claire

Source: PLoS ONE; 12/11/2024, Vol. 19 Issue 12, p1-21, 21p

Subject Terms: DNA methylation, DNA analysis, BENIGN tumors, PROSTATE cancer, GENE ontology

No-contact microchip measurements of body temperature and behavioural changes prior to foaling

Authors: Auclair-Ronzaud, Juliette, Jousset, Tristan, Dubois, Cédric, Wimel, Laurence, Jaffrézic, Florence, Chavatte-Palmer, Pascale

Source: In Theriogenology November 2020 157:399-406

Joint estimation of causal effects from observational and intervention gene expression data

Authors: Rau, Andrea, Jaffrézic, Florence, Nuel, Grégory

Subject Terms: Statistics - Applications

Access URL: http://arxiv.org/abs/1307.8046

Differential meta-analysis of RNA-seq data from multiple studies

Authors: Rau, Andrea, Marot, Guillemette, Jaffrézic, Florence

Subject Terms: Statistics - Applications, Quantitative Biology - Genomics, Statistics - Methodology

Access URL: http://arxiv.org/abs/1306.3636

Joint likelihood calculation for intervention and observational data from a Gaussian Bayesian network

Authors: Nuel, Grégory, Rau, Andrea, Jaffrézic, Florence

Subject Terms: Statistics - Applications, 62F99

Access URL: http://arxiv.org/abs/1305.0709

Reverse engineering gene regulatory networks using approximate Bayesian computation

Authors: Rau, Andrea, Jaffrézic, Florence, Foulley, Jean-Louis, Doerge, R. W.

Subject Terms: Statistics - Applications, Quantitative Biology - Molecular Networks

Access URL: http://arxiv.org/abs/1109.1402

DNAJC2 is required for mouse early embryonic development

Authors: Helary, Louise, Castille, Johan, Passet, Bruno, Vaiman, Anne, Beauvallet, Christian, Jaffrezic, Florence, Charles, Mathieu, Tamzini, Mayssa, Baraige, Fabienne, Letheule, Martine, Laubier, Johann, Moazami-Goudarzi, Katayoun, Vilotte, Jean-Luc, Blanquet, Véronique, Duchesne, Amandine

Source: Biochemical and biophysical research communications. 516(1):258-263

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100085375956.0x000001&indx=1&recIds=ETOCvdc_100085375956.0x000001

Puberty is a critical window for the impact of diet on mammary gland development in the rabbit

Authors: Hue‐Beauvais, Cathy, Laubier, Johann, Brun, Nicolas, Houtia, Inès, Jaffrezic, Florence, Bevilacqua, Claudia, Le Provost, Fabienne, Charlier, Madia

Source: Developmental dynamics. 248(10):948-960

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090927536.0x000001&indx=1&recIds=ETOCvdc_100090927536.0x000001

Generalized Character Process Models: Estimating the Genetic Basis of Traits That Cannot Be Observed and That Change with Age or Environmental Conditions

Authors: Pletcher, Scott D., Jaffrézic, Florence

Source: Biometrics, 2002 Mar 01. 58(1), 157-162.

Access URL: https://www.jstor.org/stable/3068301

Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Authors: Verrier, Eloi, Genet, Carine, Laloë, Denis, Jaffrezic, Florence, Rau, Andrea, Esquerre, Diane, Dechamp, Nicolas, Ciobotaru, Céline, Hervet, Caroline, Krieg, Francine, Jouneau, Luc, Klopp, Christophe, Quillet, Edwige, Boudinot, Pierre

Source: BMC genomics. 19(1):1-15

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165711107.0x000001&indx=1&recIds=ETOCvdc_100165711107.0x000001

Mutation of SOCS2 induces structural and functional changes in mammary development.

Authors: Ivanova, Elitsa, Hue-Beauvais, Cathy, Castille, Johan, Laubier, Johann, Le Guillou, Sandrine, Aujean, Etienne, Lecardonnel, Jerome, Lebrun, Laura, Jaffrezic, Florence, Rousseau-Ralliard, Delphine, Péchoux, Christine, Letheule, Martine, Foucras, Gilles, Charlier, Madia, Le Provost, Fabienne

Source: Development (09501991); Mar2024, Vol. 151 Issue 6, p1-13, 13p

Subject Terms: SUPPRESSORS of cytokine signaling, MAMMARY glands, SUPPRESSOR mutation, GENE expression, MILK yield, SHEEP breeds

Multi-omics data integration for the identification of biomarkers for bull fertility.

Authors: Costes, Valentin, Sellem, Eli, Marthey, Sylvain, Hoze, Chris, Bonnet, Aurélie, Schibler, Laurent, Kiefer, Hélène, Jaffrezic, Florence

Source: PLoS ONE; 2/23/2024, Vol. 19 Issue 2, p1-23, 23p

Subject Terms: DATA integration, FERTILITY, HUMAN fertility, MULTIOMICS, SEMEN analysis, CATTLE fertility, INFERTILITY

Targeted mutation and inactivation of the kinesin light chain 3 protein-encoding gene have no impact on mouse fertility†

Authors: Daniel-Carlier, Nathalie, Castille, Johan, Passet, Bruno, Vilotte, Marthe, Le Danvic, Christelle, Jaffrezic, Florence, Beauvallet, Christian, Péchoux, Christine, Capitan, Aurélien, Vilotte, Jean-luc

Source: Biology of Reproduction; January 2024, Vol. 110 Issue: 1 p78-89, 12p

Food securers or invasive aliens? Trends and consequences of non-native livestock introgression in developing countries

Authors: Leroy, Gregoire, Boettcher, Paul, Besbes, Badi, Peña, Carlos Raúl, Jaffrezic, Florence, Baumung, Roswitha

Source: Global food security. 26

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100116985872.0x000001&indx=1&recIds=ETOCvdc_100116985872.0x000001

Pangenomic Classification of Pituitary Neuroendocrine Tumors

Authors: Neou, Mario, Villa, Chiara, Armignacco, Roberta, Jouinot, Anne, Raffin-Sanson, Marie-Laure, Septier, Amandine, Letourneur, Franck, Diry, Ségolène, Diedisheim, Marc, Izac, Brigitte, Gaspar, Cassandra, Perlemoine, Karine, Verjus, Victoria, Bernier, Michèle, Boulin, Anne, Emile, Jean-François, Bertagna, Xavier, Jaffrezic, Florence, Laloe, Denis, Baussart, Bertrand, Bertherat, Jérôme, Gaillard, Stephan, Assié, Guillaume

Source: Cancer cell. 37(1):123-134.e5

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099914157.0x000001&indx=1&recIds=ETOCvdc_100099914157.0x000001

Analysis of porcine MHC using microarrays

Authors: Gao, Yu, Wahlberg, Per, Marthey, Sylvain, Esquerré, Diane, Jaffrézic, Florence, Lecardonnel, Jérome, Hugot, Karine, Rogel-Gaillard, Claire

Source: In Veterinary Immunology and Immunopathology 15 July 2012 148(1-2):78-84

Specific Milk Composition of miR-30bTransgenic Mice Associated with Early Duodenum Maturation in Offspring with Lasting Consequences for Growth

Authors: Le Guillou, Sandrine, Ciobotaru, Céline, Laubier, Johann, Castille, Johan, Aujean, Etienne, Hue-Beauvais, Cathy, Cherbuy, Claire, Liuu, Sophie, Henry, Céline, David, Agnès, Jaffrezic, Florence, Laloë, Denis, Charlier, Madia, Alexandre-Gouabau, Marie-Cécile, Le Provost, Fabienne

Source: The Journal of Nutrition; October 2023, Vol. 153 Issue: 10 p2808-2826, 19p