Integrated analysis of whole blood oxylipin and cytokine responses after bacterial, viral, and T cell stimulation reveals new immune networks

Authors: Etienne Villain, Aurélie Chanson, Malwina Mainka, Nadja Kampschulte, Pauline Le Faouder, Justine Bertrand-Michel, Marion Brandolini-Bulon, Bruno Charbit, Munyaradzi Musvosvi, Nicole Bilek, Thomas J. Scriba, Lluis Quintana-Murci, Nils Helge Schebb, Darragh Duffy, Cécile Gladine, Laurent Abel, Andres Alcover, Hugues Aschard, Philippe Bousso, Nollaig Bourke, Petter Brodin, Pierre Bruhns, Nadine Cerf-Bensussan, Ana Cumano, Christophe D’Enfert, Ludovic Deriano, Marie-Agnès Dillies, James Di Santo, Gérard Eberl, Jost Enninga, Jacques Fellay, Ivo Gomperts-Boneca, Milena Hasan, Gunilla Karlsson Hedestam, Serge Hercberg, Molly A. Ingersoll, Olivier Lantz, Rose Anne Kenny, Mickaël Ménager, Hugo Mouquet, Cliona O'Farrelly, Etienne Patin, Sandra Pellegrini, Antonio Rausell, Frédéric Rieux-Laucat, Lars Rogge, Magnus Fontes, Anavaj Sakuntabhai, Olivier Schwartz, Benno Schwikowski, Spencer Shorte, Frédéric Tangy, Antoine Toubert, Mathilde Touvier, Marie-Noëlle Ungeheuer, Christophe Zimmer, Matthew L. Albert

Source: iScience, Vol 26, Iss 8, Pp 107422- (2023)

Subject Terms: Immunology, Immune response, Microbiology, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004223014992; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/197340910dcf4806952a46ee824b2e76

Corrigendum: Unveiling Interindividual Variability of Human Fibroblast Innate Immune Response Using Robust Cell-Based Protocols

Authors: Audrey Chansard, Nelly Dubrulle, Mathilde Poujol de Molliens, Pierre B. Falanga, Tharshana Stephen, Milena Hasan, Ger van Zandbergen, Nathalie Aulner, Spencer L. Shorte, Brigitte David-Watine, the Milieu Intérieur Consortium, Laurent Abel, Andres Alcover, Hugues Aschard, Kalla Astrom, Philippe Bousso, Pierre Bruhns, Ana Cumano, Caroline Demangel, Ludovic Deriano, James Di Santo, Françoise Dromer, Gérard Eberl, Jost Enninga, Jacques Fellay, Ivo Gomperts-Boneca, Serge Hercberg, Olivier Lantz, Hugo Mouquet, Etienne Patin, Sandra Pellegrini, Stanislas Pol, Antonio Rausell, Lars Rogge, Anavaj Sakuntabhai, Olivier Schwartz, Benno Schwikowski, Spencer Shorte, Frédéric Tangy, Antoine Toubert, Mathilde Trouvier, Marie-Noëlle Ungeheuer, Darragh Duffy, Matthew L. Albert, Lluis Quintana-Murci

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: immortalization, HSV-1, FACS, cytokines, human primary cells, NF-kB, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.685768/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/f5411277a03049e5bd53c9d75c9fdf2e

Unveiling Interindividual Variability of Human Fibroblast Innate Immune Response Using Robust Cell-Based Protocols

Authors: Audrey Chansard, Nelly Dubrulle, Mathilde Poujol de Molliens, Pierre B. Falanga, Tharshana Stephen, Milena Hasan, Ger van Zandbergen, Nathalie Aulner, Spencer L. Shorte, Brigitte David-Watine, the Milieu Intérieur Consortium, Laurent Abel, Andres Alcover, Hugues Aschard, Kalla Astrom, Philippe Bousso, Pierre Bruhns, Ana Cumano, Caroline Demangel, Ludovic Deriano, James Di Santo, Françoise Dromer, Gérard Eberl, Jost Enninga, Jacques Fellay, Ivo Gomperts-Boneca, Serge Hercberg, Olivier Lantz, Hugo Mouquet, Etienne Patin, Sandra Pellegrini, Stanislas Pol, Antonio Rausell, Lars Rogge, Anavaj Sakuntabhai, Olivier Schwartz, Benno Schwikowski, Spencer Shorte, Frédéric Tangy, Antoine Toubert, Mathilde Trouvier, Marie-Noëlle Ungeheuer, Darragh Duffy, Matthew L. Albert, Lluis Quintana-Murci

Source: Frontiers in Immunology, Vol 11 (2021)

Subject Terms: immortalization, HSV-1, FACS, cytokines, human primary cells, NF-κB, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2020.569331/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/342525570c5e4f77b6899ca7a0dd7062

Standardized Whole-Blood Transcriptional Profiling Enables the Deconvolution of Complex Induced Immune Responses

Authors: Alejandra Urrutia, Darragh Duffy, Vincent Rouilly, Céline Posseme, Raouf Djebali, Gabriel Illanes, Valentina Libri, Benoit Albaud, David Gentien, Barbara Piasecka, Milena Hasan, Magnus Fontes, Lluis Quintana-Murci, Matthew L. Albert, Laurent Abel, Andres Alcover, Kalla Astrom, Philippe Bousso, Pierre Bruhns, Ana Cumano, Caroline Demangel, Ludovic Deriano, James Di Santo, Françoise Dromer, Gérard Eberl, Jost Enninga, Jacques Fellay, Antonio Freitas, Odile Gelpi, Ivo Gomperts-Boneca, Serge Hercberg, Olivier Lantz, Claude Leclerc, Hugo Mouquet, Sandra Pellegrini, Stanislas Pol, Lars Rogge, Anavaj Sakuntabhai, Olivier Schwartz, Benno Schwikowski, Spencer Shorte, Vassili Soumelis, Frédéric Tangy, Eric Tartour, Antoine Toubert, Marie-Noëlle Ungeheuer

Source: Cell Reports, Vol 16, Iss 10, Pp 2777-2791 (2016)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124716310579; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/29e815d288914e988aa9c079f47b8846

The hidden base of the iceberg: gut peptidoglycome dynamics is foundational to its influence on the host

Authors: Richard Wheeler, Ivo Gomperts Boneca

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Microbiota, peptidoglycan, prophage, host signaling, chronic inflammation, Gut, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/137562645cae421aac53b9dd86c88617

Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake

Authors: Maximilian Zinke, Maylis Lejeune, Ariel Mechaly, Benjamin Bardiaux, Ivo Gomperts Boneca, Philippe Delepelaire, Nadia Izadi-Pruneyre

Source: Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/ca4be11f6ba64ea48c98ad01dc70f542

Activation of Nod2 signaling upon norovirus infection enhances antiviral immunity and susceptibility to colitis

Authors: Ghaffar Muharram, Marion Thépaut, Pierre-Emmanuel Lobert, Teddy Grandjean, Olivier Boulard, Myriam Delacre, Emmrich Wakeford, Richard Wheeler, Lionel Franz Poulin, Ivo Gomperts Boneca, Frank Lafont, Marie-Cécile Michallet, Didier Hober, Ken Cadwell, Mathias Chamaillard

Source: Gut Microbes, Vol 15, Iss 2 (2023)

Subject Terms: Antiviral immunity, colitis, macrophages NOD2, norovirus, signaling, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/82e1ea85018e431fa5bf296b5b136da8

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NOD-like receptors in asthma

Authors: Daniel Alvarez-Simon, Saliha Ait Yahia, Patricia de Nadai, Camille Audousset, Mathias Chamaillard, Ivo Gomperts Boneca, Anne Tsicopoulos

Source: Frontiers in Immunology, Vol 13 (2022)

Subject Terms: asthma, innate immunity, NOD1, NOD2, RIPK2, NLRP3, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.928886/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/686485a0296b4a9f9184720eaa03cf59

Alive Pathogenic and Saprophytic Leptospires Enter and Exit Human and Mouse Macrophages With No Intracellular Replication

Authors: Ignacio Santecchia, Delphine Bonhomme, Stylianos Papadopoulos, Pedro Escoll, Alexandre Giraud-Gatineau, Maryse Moya-Nilges, Frédérique Vernel-Pauillac, Ivo Gomperts Boneca, Catherine Werts

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

Subject Terms: Leptospira interrogans, Leptospira biflexa, macrophages, intracellularity, TLRs, high content confocal microscopy, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.936931/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/33faeedf681644fc96a715f5af680349

Acute monoarthritis in young children: comparing the characteristics of patients with juvenile idiopathic arthritis versus septic and undifferentiated arthritis

Authors: Marion Thomas, Stephane Bonacorsi, Anne-Laure Simon, Cindy Mallet, Mathie Lorrot, Albert Faye, Glory Dingulu, Marion Caseris, Ivo Gomperts Boneca, Camille Aupiais, Ulrich Meinzer

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-10 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/ebeb97f1dfa94aafb330f57dd531b9e4

Effect of gut microbiota on depressive-like behaviors in mice is mediated by the endocannabinoid system

Authors: Grégoire Chevalier, Eleni Siopi, Laure Guenin-Macé, Maud Pascal, Thomas Laval, Aline Rifflet, Ivo Gomperts Boneca, Caroline Demangel, Benoit Colsch, Alain Pruvost, Emeline Chu-Van, Aurélie Messager, François Leulier, Gabriel Lepousez, Gérard Eberl, Pierre-Marie Lledo

Source: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/161cd6205c514a068009fecb2385aea8

PGFinder, a novel analysis pipeline for the consistent, reproducible, and high-resolution structural analysis of bacterial peptidoglycans

Authors: Ankur V Patel, Robert D Turner, Aline Rifflet, Adelina E Acosta-Martin, Andrew Nichols, Milena M Awad, Dena Lyras, Ivo Gomperts Boneca, Marshall Bern, Mark O Collins, Stéphane Mesnage

Source: eLife, Vol 10 (2021)

Subject Terms: peptigoglycan, clostridium difficile, peptidoglycan structure, software, open source, jupyter notebook, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/70597; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/dc8df51d605e44f7b13fa1ec6b79a43e

LpxT-Dependent Phosphorylation of Lipid A in Escherichia coli Increases Resistance to Deoxycholate and Enhances Gut Colonization

Authors: Xudong Tian, Guillaume Manat, Elise Gasiorowski, Rodolphe Auger, Samia Hicham, Dominique Mengin-Lecreulx, Ivo Gomperts Boneca, Thierry Touzé

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: lipopolysaccharides, lipid A, two-component system, antibiotic resistance, polymyxin B, bile acid, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.676596/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/4fe97d1e463f46199baca02806b86190

A Secreted NlpC/P60 Endopeptidase from Photobacterium damselae subsp. piscicida Cleaves the Peptidoglycan of Potentially Competing Bacteria

Authors: Johnny Lisboa, Cassilda Pereira, Aline Rifflet, Juan Ayala, Mateus S. Terceti, Alba V. Barca, Inês Rodrigues, Pedro José Barbosa Pereira, Carlos R. Osorio, Francisco García-del Portillo, Ivo Gomperts Boneca, Ana do Vale, Nuno M. S. dos Santos

Source: mSphere, Vol 6, Iss 1 (2021)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/da0ea637a6454edbac5b7c7c248665b7

Study of the cwaRS-ldcA Operon Coding a Two-Component System and a Putative L,D-Carboxypeptidase in Lactobacillus paracasei

Authors: Hélène Scornec, Aurore Palud, Thierry Pédron, Richard Wheeler, Clément Petitgonnet, Ivo Gomperts Boneca, Jean-François Cavin, Philippe J. Sansonetti, Hélène Licandro

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: peptidoglycan, two-component system, gene regulation, carboxypeptidase, antimicrobial peptides, lactic acid bacteria, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00156/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/8e356e7eee164390abd26230ea458d0c

Defective lytic transglycosylase disrupts cell morphogenesis by hindering cell wall de-O-acetylation in Neisseria meningitidis

Authors: Allison Hillary Williams, Richard Wheeler, Ala-Eddine Deghmane, Ignacio Santecchia, Ryan E Schaub, Samia Hicham, Maryse Moya Nilges, Christian Malosse, Julia Chamot-Rooke, Ahmed Haouz, Joseph P Dillard, William P Robins, Muhamed-Kheir Taha, Ivo Gomperts Boneca

Source: eLife, Vol 9 (2020)

Subject Terms: Neisseria meningitidis, peptidoglycan, Lytic transglycosylase, cell division, cell separation, X-ray crystallography, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/51247; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/72f48671227f473d8dc36f8870e383a4

HupA, the main undecaprenyl pyrophosphate and phosphatidylglycerol phosphate phosphatase in Helicobacter pylori is essential for colonization of the stomach.

Authors: Elise Gasiorowski, Rodolphe Auger, Xudong Tian, Samia Hicham, Chantal Ecobichon, Sophie Roure, Martin V Douglass, M Stephen Trent, Dominique Mengin-Lecreulx, Thierry Touzé, Ivo Gomperts Boneca

Source: PLoS Pathogens, Vol 15, Iss 9, p e1007972 (2019)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/4defe23ba9ba4e338d69a1e4e4d9d43a

Lactobacillus paracasei feeding improves immune control of influenza infection in mice.

Authors: Nouria Belkacem, Nicolas Serafini, Richard Wheeler, Muriel Derrien, Lilia Boucinha, Aurélie Couesnon, Nadine Cerf-Bensussan, Ivo Gomperts Boneca, James P Di Santo, Muhamed-Kkeir Taha, Raphaëlle Bourdet-Sicard

Source: PLoS ONE, Vol 12, Iss 9, p e0184976 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5607164?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/7da690a71e494038bd36385bf965f6fa

Penicillin binding proteins as danger signals: meningococcal penicillin binding protein 2 activates dendritic cells through Toll-like receptor 4.

Authors: Marcelo Hill, Ala-Eddine Deghmane, Mercedes Segovia, Maria Leticia Zarantonelli, Gaëlle Tilly, Philippe Blancou, Gaëlle Bériou, Régis Josien, Ignacio Anegon, Eva Hong, Corinne Ruckly, Aude Antignac, Meriem El Ghachi, Ivo Gomperts Boneca, Muhamed-Kheir Taha, Maria Cristina Cuturi

Source: PLoS ONE, Vol 6, Iss 10, p e23995 (2011)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/22046231/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/61e725d987f74644a96064e4514e5ca7