BNT162b2 mRNA vaccination affects the gut microbiome composition of patients with follicular lymphoma and chronic lymphocytic leukemia

Authors: Annalisa Chiarenza, Gaia Vertillo Aluisio, Nunziatina Laura Parrinello, Sara Marino, Anna Maria Corsale, Grete Francesca Privitera, MojtabaShekarkar Azgomi, Enrico La Spina, Daniela Cambria, Angelo Curtopelle, Gaetano Isola, Cirino Botta, Francesco Di Raimondo, Alessandra Romano, Maria Santagati

Source: Biomarker Research, Vol 13, Iss 1, Pp 1-17 (2025)

Subject Terms: Chronic lymphatic leukemia, Follicular lymphoma, COVID-19, Vaccination, Myeloid composition, Immunome, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://doaj.org/toc/2050-7771

Access URL: https://doaj.org/article/b723d2123b284821ac7fd0935f382d97

Complex immune network and regional consistency in the human gastric mucosa revealed by high-resolution spectral cytometry

Authors: Ángel De Prado, Paloma Cal-Sabater, Aida Fiz-López, Sandra Izquierdo, Daniel Corrales, Francisco Pérez-Cózar, Juan H-Vázquez, Elisa Arribas-Rodríguez, Cándido Perez-Segurado, Álvaro Martín Muñoz, José A. Garrote, Eduardo Arranz, Concepción Marañón, Sara Cuesta-Sancho, Luis Fernández-Salazar, David Bernardo

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-17 (2024)

Subject Terms: Spectral cytometry, Stomach, Human, Immunome, Gastric, H. pylori, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/f3b3fd2d337942698c3f4efd4fd903d7

Immunome profiling in prostate cancer: a guide for clinicians

Authors: Luis San-Jose Manso, Arantzazu Alfranca, Ignacio Moreno-Pérez, María Ruiz-Vico, Clara Velasco, Patricia Toquero, María Pacheco, Almudena Zapatero, Diego Aldave, Guillermo Celada, Eduardo Albers, María-Dolores Fenor de la Maza, Jorge García, Elena Castro, David Olmos, Ramón Colomer, Nuria Romero-Laorden

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: immunome, prostate cancer, biomarkers, immunophenotype, immunotherapy, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1398109/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/84a97d87cbd74ed5aa219c786b306597

Unbiased immunome characterisation correlates with COVID-19 mRNA vaccine failure in immunocompromised adults

Authors: Juan H-Vázquez, Paloma Cal-Sabater, Elisa Arribas-Rodríguez, Aida Fiz-López, Candido Perez-Segurado, Álvaro Martín-Muñoz, Ángel De Prado, Marina Perez Mazzali, Carolina G. de Castro, Alejandro G. del Hierro, Ignacio de la Fuente Graciani, Sonia Pérez González, Sara Gutiérrez, Pablo Tellería, Cristina Novoa, Silvia Rojo Rello, Antonio Garcia-Blesa, Rosa Sedano, Ana María Martínez García, Sonsoles Garcinuño Pérez, Marta Domínguez-Gil, Cristina Hernán García, Ma Mercedes Guerra, Eduardo Muñoz-Sánchez, Cristina Barragan-Pérez, Soraya Diez Morales, Oriana Casazza Donnarumma, Daniel Ramos Pollo, Natalia Santamarta Solla, Paula Ma Álvarez Manzanares, Sara Bravo, Cristina García Alonso, Luis Alberto Avendaño Fernández, Jenifer Gay Alonso, José A. Garrote, Eduardo Arranz, José María Eiros, Fernando Rescalvo Santiago, Carolina Quevedo Villegas, Eduardo Tamayo, Antonio Orduña, Carlos Dueñas, María Jesús Peñarrubia, Sara Cuesta-Sancho, María Montoya, David Bernardo

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: computational cytometry, vaccine failure, COVID-19, immunome, immunocompromised adult, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1405217/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/5e00e40de8c641538e2fc8cc4ff5fa3f

Soluble immune checkpoints: implications for cancer prognosis and response to immune checkpoint therapy and conventional therapies

Authors: Stephanie C. Pitts, Jeffrey Schlom, Renee N. Donahue

Source: Journal of Experimental & Clinical Cancer Research, Vol 43, Iss 1, Pp 1-32 (2024)

Subject Terms: Peripheral immunome, Blood analyses, Soluble immune checkpoints, Biomarkers, Immune checkpoint inhibitors, Conventional cancer therapies, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1756-9966

Access URL: https://doaj.org/article/9a7a67bd92584ad988f0fb41a0f405ba

Circulating immunome fingerprint in eosinophilic esophagitis is associated with clinical response to proton pump inhibitor treatment

Authors: Lola Ugalde-Triviño, Francisca Molina-Jiménez, Juan H-Vázquez, Carlos Relaño-Rupérez, Laura Arias-González, Sergio Casabona, María Teresa Pérez-Fernández, Verónica Martín-Domínguez, Jennifer Fernández-Pacheco, Alfredo J. Lucendo, David Bernardo, Cecilio Santander, Pedro Majano

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: spectral cytometry, biomarker, eosinophilic esophagitis, plasmacytoid dendritic cells, immunome, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1374611/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/daa6704294954306980f91ad20ebac31

Decidual leukocytes respond to African lineage Zika virus infection with mild anti-inflammatory changes during acute infection in rhesus macaques

Authors: Michelle R. Koenig, Jessica Vazquez, Fernanda B. Leyva Jaimes, Ann M. Mitzey, Aleksandar K. Stanic, Thaddeus G. Golos

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: Zika virus, decidua, inflammation, immunome, rhesus macaque, pregnancy, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1363169/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/c4b5f3eabe0549428e38f31a4e5f1833

Antibody reactive immunomes of Ehrlichia chaffeensis and E. canis are diverse and defined by conformational antigenic determinants

Authors: Tian Luo, Jignesh G. Patel, Xiaofeng Zhang, Jere W. McBride

Source: Frontiers in Cellular and Infection Microbiology, Vol 13 (2024)

Subject Terms: Ehrlichia, antibody epitope, conformation-dependent, immunome, immunomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2023.1321291/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/516ddcdfdaca473bbaa2373282e9ffa9

Exploring the joint potential of inflammation, immunity, and receptor-based biomarkers for evaluating ME/CFS progression

Authors: Uldis Berkis, Simons Svirskis, Angelika Krumina, Sabine Gravelsina, Anda Vilmane, Diana Araja, Zaiga Nora-Krukle, Modra Murovska

Source: Frontiers in Immunology, Vol 14 (2023)

Subject Terms: Myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS), immunome, inflammatome, artificial intelligence (AI) supported diagnosis, prognostic and therapy assessment biomarkers, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2023.1294758/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/cb1d39d0abfc4c358a43ff114c397f82

Immunogenetics

Contributors: Langerak, Anton W.

Subject Terms: The immunome, Adaptive immune cells, Antigen receptors, Immunoinformatics, T-cell receptors, Lymphocytes

File Description: image/jpeg

Relation: Methods in Molecular Biology

Access URL: https://directory.doabooks.org/handle/20.500.12854/84379
https://library.oapen.org/handle/20.500.12657/57008
https://library.oapen.org/bitstream/20.500.12657/57008/1/978-1-0716-2115-8.pdf

Faecal metabolite deficit, gut inflammation and diet in Parkinson's disease: Integrative analysis indicates inflammatory response syndrome

Authors: Aisha Augustin, Adrien Le Guennec, Chianna Umamahesan, Aidan Kendler‐Rhodes, Rosalind M. Tucker, Elena Chekmeneva, Panteleimon Takis, Matthew Lewis, Karthik Balasubramanian, Neville DeSouza, Benjamin H Mullish, David Taylor, Suzanne Ryan, Kevin Whelan, Yun Ma, Mohammad A. A. Ibrahim, Ingvar Bjarnason, Bu’ Hussain Hayee, André Charlett, Sylvia M. Dobbs, R. John Dobbs, Clive Weller

Source: Clinical and Translational Medicine, Vol 13, Iss 1, Pp n/a-n/a (2023)

Subject Terms: faecal metabolome, intestinal inflammation, Parkinson's disease, systemic immunome, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/2001-1326

Access URL: https://doaj.org/article/ccde67eafabf48f386cee791aff7eb94

The human antibody sequence space and structural design of the V, J regions, and CDRH3 with Rosetta

Authors: Samuel Schmitz, Emily A. Schmitz, James E. Crowe, Jens Meiler

Source: mAbs, Vol 14, Iss 1 (2022)

Subject Terms: Human-likeness, antibody design, rosetta, immunome repertoire, biostatistics, HumanizationABBREVIATIONS, Therapeutics. Pharmacology, RM1-950, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://doaj.org/toc/1942-0862; https://doaj.org/toc/1942-0870

Access URL: https://doaj.org/article/55d70e278c44490795e6dde18e581202

Avian Immunome DB: an example of a user-friendly interface for extracting genetic information

Authors: Ralf C. Mueller, Nicolai Mallig, Jacqueline Smith, Lél Eöery, Richard I. Kuo, Robert H. S. Kraus

Source: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-16 (2020)

Subject Terms: B10K, Avian, Genomics, Immunogenomics, Immunology, Immunome, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-020-03764-3; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/175c91225ee14cda957333afd921a7de

Inflammatory Bowel Disease Therapy: Beyond the Immunome

Authors: Claudio Fiocchi, Dimitrios Iliopoulos

Source: Frontiers in Immunology, Vol 13 (2022)

Subject Terms: inflammatory bowel disease, IBD, immunome, complexity, integration, systems biology, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.864762/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/f33b820e28224587b3175d7fd3f18017

Identification of three subtypes of triple-negative breast cancer with potential therapeutic implications

Authors: Pascal Jézéquel, Olivier Kerdraon, Hubert Hondermarck, Catherine Guérin-Charbonnel, Hamza Lasla, Wilfried Gouraud, Jean-Luc Canon, Andrea Gombos, Florence Dalenc, Suzette Delaloge, Jérôme Lemonnier, Delphine Loussouarn, Véronique Verrièle, Mario Campone

Source: Breast Cancer Research, Vol 21, Iss 1, Pp 1-14 (2019)

Subject Terms: Breast cancer, Triple-negative, Transcriptomics, Molecular subtypes, Immunome, Tertiary lymphoid structures, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13058-019-1148-6; https://doaj.org/toc/1465-542X

Access URL: https://doaj.org/article/c9a534fbdbec4c00829a348e951a5380

Integration of Immunome With Disease-Gene Network Reveals Common Cellular Mechanisms Between IMIDs and Drug Repurposing Strategies

Authors: Abhinandan Devaprasad, Timothy R. D. J. Radstake, Aridaman Pandit

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: IMID (immune-mediated inflammatory diseases), disease-associated cells, disease-associated genes, drug repurposing, machine learning, immunome, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.669400/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/61db59ced0e24efcb01b17618da1616f

Protein-Based Immunome Wide Association Studies (PIWAS) for the Discovery of Significant Disease-Associated Antigens

Authors: Winston A. Haynes, Kathy Kamath, Rebecca Waitz, Patrick S. Daugherty, John C. Shon

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: computational immunology, antigen, immunome, bioinformatics & computational biology, immunology & inflammation, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.625311/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/4081611d5772442ebdf128e99c011aa0

The Future of Blood Testing Is the Immunome

Authors: Ramy A. Arnaout, Eline T. Luning Prak, Nicholas Schwab, Florian Rubelt, the Adaptive Immune Receptor Repertoire Community, Rohit Arora, Rachael Bashford-Rogers, Felix Breden, Syed Ahmad Chan Bukhari, Brian Corrie, Lindsay G. Cowell, Sol Efroni, Christopher Gooley, Victor Greiff, Jason Vander Heiden, Yoshinobu Koguchi, Ton Langerak, Theam Soon Lim, Eline Luning Prak, Encarnita Mariotti-Ferrandiz, Susanna Marquez, Pieter Meysman, Enkelejda Miho, Keshav Motwani, Nima Nouri, Milena Pavlović, Geir Kjetil Sandve, Igor Snapkov, Cinque Soto, Ulrik Stervbo, Johannes Trück, Henk-Jan van den Ham, Corey Watson, Cédric R. Weber

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: adaptive immune receptor repertoire (AIRR), diagnostic test, T-cell receptor repertoire, antibody repertoire, analyses, immunome, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.626793/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/722776cd07cd4898b11d91fbcc3ffabd

Systemic Sclerosis Perturbs the Architecture of the Immunome

Authors: Bhairav Paleja, Andrea Hsiu Ling Low, Pavanish Kumar, Suzan Saidin, Ahmad Lajam, Sharifah Nur Hazirah, Camillus Chua, Lai Li Yun, Salvatore Albani

Source: Frontiers in Immunology, Vol 11 (2020)

Subject Terms: systemic sclerosis, MAIT, mass cytometry, immunome, chronic stimulation, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fimmu.2020.01602/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/baeaeda97260400cb3eb74c553eaec1e

The Human Vaccines Project: Towards a comprehensive understanding of the human immune response to immunization

Authors: Stacey L. Wooden, Wayne C. Koff

Source: Human Vaccines & Immunotherapeutics, Vol 14, Iss 9, Pp 2214-2216 (2018)

Subject Terms: systems vaccinology, experimental clinical trials, licensed vaccines, hepatitis b, influenza, human immunome, cancer, vaccine, development, hepatitis, immune modulators, infectious disease, mathematical modelling, molecular biology, vaccinology, Immunologic diseases. Allergy, RC581-607, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://doaj.org/toc/2164-5515; https://doaj.org/toc/2164-554X

Access URL: https://doaj.org/article/0917f3684c7e49d980354c83b34f8d79