Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins

Authors: Per Unneberg, Mårten Larsson, Anna Olsson, Ola Wallerman, Anna Petri, Ignas Bunikis, Olga Vinnere Pettersson, Chiara Papetti, Astthor Gislason, Henrik Glenner, Joan E. Cartes, Leocadio Blanco-Bercial, Elena Eriksen, Bettina Meyer, Andreas Wallberg

Source: Nature Communications, Vol 15, Iss 1, Pp 1-29 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a2c1aab5f1694e8dbc3e1d67591d55a4

The genome sequence of the white-tailed eagle, Haliaeetus albicilla (Linnaeus, 1758) [version 1; peer review: 2 approved, 1 approved with reservations]

Authors: Snæbjörn Pálsson, Julia Heintz, Kristinn Haukur Skarphéðinsson, Ann-Sofi Strand, Pernilla Quarfordt, Olga Vinnere Pettersson, Ignas Bunikis

Source: Wellcome Open Research, Vol 9 (2024)

Subject Terms: Haliaeetus albicilla, white-tailed eagle, genome sequence, chromosomal, Accipitriformes, eng, Medicine, Science

File Description: electronic resource

Relation: https://wellcomeopenresearch.org/articles/9-575/v1; https://doaj.org/toc/2398-502X

Access URL: https://doaj.org/article/90cde2dd23cc42e6bd5d2bbb6dd821e5

Long-read sequencing and optical mapping generates near T2T assemblies that resolves a centromeric translocation

Authors: Esmee ten Berk de Boer, Adam Ameur, Ignas Bunikis, Marlene Ek, Eva-Lena Stattin, Lars Feuk, Jesper Eisfeldt, Anna Lindstrand

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-8 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/666df5f649f542c39e9bfde63036f5b2

Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH

Authors: Mariya Lysenkova Wiklander, Elin Övernäs, Johanna Lagensjö, Amanda Raine, Anna Petri, Ann-Christin Wiman, Jon Ramsell, Yanara Marincevic-Zuniga, Henrik Gezelius, Tom Martin, Ignas Bunikis, Sara Ekberg, Rikard Erlandsson, Pontus Larsson, Mai-Britt Mosbech, Susana Häggqvist, Susanne Hellstedt Kerje, Lars Feuk, Adam Ameur, Ulrika Liljedahl, Jessica Nordlund

Source: BMC Research Notes, Vol 16, Iss 1, Pp 1-5 (2023)

Subject Terms: Next-generation sequencing, Long-read, Short-read, Multi-omics, Genomics, Transcriptomics, Medicine, Biology (General), QH301-705.5, Science (General), Q1-390

File Description: electronic resource

Relation: https://doaj.org/toc/1756-0500

Access URL: https://doaj.org/article/5165637138d0472e9926245c93331949

Long-read whole-genome analysis of human single cells

Authors: Joanna Hård, Jeff E. Mold, Jesper Eisfeldt, Christian Tellgren-Roth, Susana Häggqvist, Ignas Bunikis, Orlando Contreras-Lopez, Chen-Shan Chin, Jessica Nordlund, Carl-Johan Rubin, Lars Feuk, Jakob Michaëlsson, Adam Ameur

Source: Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/efffad5a10524d999abe2caf7681ce2d

PB1709: A COMPLETE DIGITAL KARYOTYPE OF THE B-CELL LEUKEMIA REH CELL LINE RESOLVED BY LONG-READ SEQUENCING

Authors: Mariya Lysenkova Wiklander, Gustav Arvidsson, Ignas Bunikis, Anders Lundmark, Amanda Raine, Yanara Marincevic-Zuniga, Henrik Gezelius, Anna Bremer, Lars Feuk, Adam Ameur, Jessica Nordlund

Source: HemaSphere, Vol 7, p e656876f (2023)

Subject Terms: Diseases of the blood and blood-forming organs, RC633-647.5

File Description: electronic resource

Relation: http://journals.lww.com/10.1097/01.HS9.0000973704.65687.6f; https://doaj.org/toc/2572-9241

Access URL: https://doaj.org/article/2942b38f78fa4399a9cc153553232f2b

Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

Authors: Ida Höijer, Josefin Johansson, Sanna Gudmundsson, Chen-Shan Chin, Ignas Bunikis, Susana Häggqvist, Anastasia Emmanouilidou, Maria Wilbe, Marcel den Hoed, Marie-Louise Bondeson, Lars Feuk, Ulf Gyllensten, Adam Ameur

Source: Genome Biology, Vol 21, Iss 1, Pp 1-19 (2020)

Subject Terms: CRISPR-Cas9, On-target, Off-target, Long-read sequencing, Single molecule sequencing, PacBio sequencing, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/faeeee05357040f48367202efe662786

Temporal changes in the vaginal microbiota in self-samples and its association with persistent HPV16 infection and CIN2+

Authors: Malin Berggrund, Inger Gustavsson, Riina Aarnio, Julia Hedlund Lindberg, Karin Sanner, Ingrid Wikström, Stefan Enroth, Ignas Bunikis, Matts Olovsson, Ulf Gyllensten

Source: Virology Journal, Vol 17, Iss 1, Pp 1-9 (2020)

Subject Terms: Vaginal microbiota, Self-sampling, HPV, CIN2+, Cervical cancer, FTA card, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12985-020-01420-z; https://doaj.org/toc/1743-422X

Access URL: https://doaj.org/article/fdcacec767ab420e847436c6306a79f3

Discovery and population genomics of structural variation in a songbird genus

Authors: Matthias H. Weissensteiner, Ignas Bunikis, Ana Catalán, Kees-Jan Francoijs, Ulrich Knief, Wieland Heim, Valentina Peona, Saurabh D. Pophaly, Fritz J. Sedlazeck, Alexander Suh, Vera M. Warmuth, Jochen B. W. Wolf

Source: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/0ba2f1405bfc49e79cbe0e0b69e710ec

A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds

Authors: Andreas Wallberg, Ignas Bunikis, Olga Vinnere Pettersson, Mai-Britt Mosbech, Anna K. Childers, Jay D. Evans, Alexander S. Mikheyev, Hugh M. Robertson, Gene E. Robinson, Matthew T. Webster

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-19 (2019)

Subject Terms: Genome assembly, Single-molecule real-time (SMRT) sequencing, Linked-read sequencing, Optical mapping, Hi-C, Telomeres, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-019-5642-0; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/51c888da991d4db886d2c3dd8c82d76f

The Carniolan Honeybee from Slovenia—A Complete and Annotated Mitochondrial Genome with Comparisons to Closely Related Apis mellifera Subspecies

Authors: Ajda Moškrič, Andraž Marinč, Polonca Ferk, Brane Leskošek, Mai-Britt Mosbech, Ignas Bunikis, Olga Vinnere Pettersson, Lucile Soler, Janez Prešern

Source: Insects, Vol 13, Iss 5, p 403 (2022)

Subject Terms: western honeybee, Apis mellifera carnica, mitochondrial genome, phylogeny, C lineage, annotation, Science

File Description: electronic resource

Relation: https://www.mdpi.com/2075-4450/13/5/403; https://doaj.org/toc/2075-4450

Access URL: https://doaj.org/article/2b6131d4ef354519ac0dee25414bc1f5

Author Correction: Discovery and population genomics of structural variation in a songbird genus

Authors: Matthias H. Weissensteiner, Ignas Bunikis, Ana Catalán, Kees-Jan Francoijs, Ulrich Knief, Wieland Heim, Valentina Peona, Saurabh D. Pophaly, Fritz J. Sedlazeck, Alexander Suh, Vera M. Warmuth, Jochen B. W. Wolf

Source: Nature Communications, Vol 12, Iss 1, Pp 1-1 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/b90f45492a2e4e20bb6e3ff8f1c8d0a5

Complete genome sequence of Borrelia afzelii K78 and comparative genome analysis.

Authors: Wolfgang Schüler, Ignas Bunikis, Jacqueline Weber-Lehman, Pär Comstedt, Sabrina Kutschan-Bunikis, Gerold Stanek, Jutta Huber, Andreas Meinke, Sven Bergström, Urban Lundberg

Source: PLoS ONE, Vol 10, Iss 3, p e0120548 (2015)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/5767610401b74e03a2f1600754196cae

Transcriptome of the alternative ethanol production strain Dekkera bruxellensis CBS 11270 in sugar limited, low oxygen cultivation.

Authors: Ievgeniia A Tiukova, Mats E Petterson, Christian Tellgren-Roth, Ignas Bunikis, Thomas Eberhard, Olga Vinnere Pettersson, Volkmar Passoth

Source: PLoS ONE, Vol 8, Iss 3, p e58455 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3596373?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/828695ffabd74d71a4a0a9d98f30278c

DipA, a pore-forming protein in the outer membrane of Lyme disease spirochetes exhibits specificity for the permeation of dicarboxylates.

Authors: Marcus Thein, Mari Bonde, Ignas Bunikis, Katrin Denker, Albert Sickmann, Sven Bergström, Roland Benz

Source: PLoS ONE, Vol 7, Iss 5, p e36523 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3349712?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/3846788142b249208142a9d1897ef59e

An RND-type efflux system in Borrelia burgdorferi is involved in virulence and resistance to antimicrobial compounds.

Authors: Ignas Bunikis, Katrin Denker, Yngve Ostberg, Christian Andersen, Roland Benz, Sven Bergström

Source: PLoS Pathogens, Vol 4, Iss 2, p e1000009 (2008)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2279261?pdf=render; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/397d9074f384405393fd8da642434cde

Tickborne Relapsing Fever Diagnosis Obscured by Malaria, Togo

Authors: Annika Nordstrand, Ignas Bunikis, Christer Larsson, Kodjo Tsogbe, Tom G. Schwan, Mikael Nilsson, Sven Bergström

Source: Emerging Infectious Diseases, Vol 13, Iss 1, Pp 117-117 (2007)

Subject Terms: Malaria, Borrelia, public health, West Africa, diagnostics, antimicrobial drug treatment, Medicine, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://wwwnc.cdc.gov/eid/article/13/1/06-0670_article; https://doaj.org/toc/1080-6040; https://doaj.org/toc/1080-6059

Access URL: https://doaj.org/article/2bc7b1038bb14f72bbcacdb23ec60711