A transcriptional and regulatory map of mouse somite maturation

Authors: Ibarra-Soria, Ximena, Thierion, Elodie, Mok, Gi Fay, Münsterberg, Andrea E., Odom, Duncan T., Marioni, John C.

Source: In Developmental Cell 9 October 2023 58(19):1983-1995

A single-cell molecular map of mouse gastrulation and early organogenesis

Authors: Pijuan-Sala, Blanca, Griffiths, Jonathan, Guibentif, Carolina, Hiscock, Tom, Jawaid, Wajid, Calero-Nieto, Fernando, Mulas, Carla, Ibarra-Soria, Ximena, Tyser, Richard, Ho, Debbie, Reik, Wolf, Srinivas, Shankar, Simons, Benjamin, Nichols, Jennifer, Marioni, John, Göttgens, Berthold

Source: Nature. 566(7745):490-495

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134236149.0x000001&indx=1&recIds=ETOCvdc_100134236149.0x000001

Multi-omics profiling of mouse gastrulation at single-cell resolution

Authors: Argelaguet, Ricard, Clark, Stephen J., Mohammed, Hisham, Stapel, L. Carine, Krueger, Christel, Kapourani, Chantriolnt-Andreas, Imaz-Rosshandler, Ivan, Lohoff, Tim, Xiang, Yunlong, Hanna, Courtney W., Smallwood, Sebastien, Ibarra-Soria, Ximena, Buettner, Florian, Sanguinetti, Guido, Xie, Wei, Krueger, Felix, Göttgens, Berthold, Rugg-Gunn, Peter J., Kelsey, Gavin, Dean, Wendy, Nichols, Jennifer, Stegle, Oliver, Marioni, John C., Reik, Wolf

Source: Nature. 576(7787):487-491

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193495353.0x000001&indx=1&recIds=ETOCvdc_100193495353.0x000001

CTCF maintains regulatory homeostasis of cancer pathways

Authors: Aitken, Sarah, Ibarra-Soria, Ximena, Kentepozidou, Elissavet, Flicek, Paul, Feig, Christine, Marioni, John, Odom, Duncan

Source: Genome biology. 19(1):1-17

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174858506.0x000001&indx=1&recIds=ETOCvdc_100174858506.0x000001

Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation

Authors: Ibarra-Soria, Ximena, Jawaid, Wajid, Pijuan-Sala, Blanca, Ladopoulos, Vasileios, Scialdone, Antonio, Jörg, David, Tyser, Richard C. V., Calero-Nieto, Fernando, Mulas, Carla, Nichols, Jennifer, Vallier, Ludovic, Srinivas, Shankar, Simons, Benjamin, Göttgens, Berthold, Marioni, John

Source: Nature cell biology. 20(2):127-134

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100102162289.0x000001&indx=1&recIds=ETOCvdc_100102162289.0x000001

BCL11A Haploinsufficiency Causes an Intellectual Disability Syndrome and Dysregulates Transcription

Authors: Dias, Cristina, Estruch, Sara B., Graham, Sarah A., McRae, Jeremy, Sawiak, Stephen J., Hurst, Jane A., Joss, Shelagh K., Holder, Susan E., Morton, Jenny E.V., Turner, Claire, Thevenon, Julien, Mellul, Kelly, Sánchez-Andrade, Gabriela, Ibarra-Soria, Ximena, Deriziotis, Pelagia, Santos, Rui F., Lee, Song-Choon, Faivre, Laurence, Kleefstra, Tjitske, Liu, Pentao, Hurles, Mathew E., Fisher, Simon E., Logan, Darren W.

Source: In The American Journal of Human Genetics 4 August 2016 99(2):253-274

Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens.

Authors: Alda-Catalinas, Celia, Ibarra-Soria, Ximena, Flouri, Christina, Gordillo, Jorge Esparza, Cousminer, Diana, Hutchinson, Anna, Sun, Bin, Pembroke, William, Ullrich, Sebastian, Krejci, Adam, Cortes, Adrian, Acevedo, Alison, Malla, Sunir, Fishwick, Carl, Drewes, Gerard, Rapiteanu, Radu

Source: Genome Biology; 2/2/2024, Vol. 25 Issue 1, p1-27, 27p

Cyclic Regulation of Sensory Perception by a Female Hormone Alters Behavior

Authors: Dey, Sandeepa, Chamero, Pablo, Pru, James K., Chien, Ming-Shan, Ibarra-Soria, Ximena, Spencer, Kathryn R., Logan, Darren W., Matsunami, Hiroaki, Peluso, John J., Stowers, Lisa

Source: In Cell 4 June 2015 161(6):1334-1344

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

Authors: Kentepozidou, Elissavet, Aitken, Sarah J., Feig, Christine, Stefflova, Klara, Ibarra-Soria, Ximena, Odom, Duncan T., Roller, Maša, Flicek, Paul

Source: Genome biology. 21(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129316252.0x000001&indx=1&recIds=ETOCvdc_100129316252.0x000001

Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons

Authors: Barnes, If H. A., Ibarra-Soria, Ximena, Fitzgerald, Stephen, Gonzalez, Jose M., Davidson, Claire, Hardy, Matthew P., Manthravadi, Deepa, Van Gerven, Laura, Jorissen, Mark, Zeng, Zhen, Khan, Mona, Mombaerts, Peter, Harrow, Jennifer, Logan, Darren W., Frankish, Adam

Source: BMC genomics. 21(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164262978.0x000001&indx=1&recIds=ETOCvdc_100164262978.0x000001

Context-dependent individualization of nucleotides and virtual genomic hybridization allow the precise location of human SNPs

Authors: Reyes, José, Gómez-Romero, Laura, Ibarra-Soria, Ximena, Palacios-Flores, Kim, Arriola, Luis R., Wences, Alejandro, García, Delfino, Boege, Margareta, Dávila, Guillermo, Flores, Margarita, Palacios, Rafael

Source: Proceedings of the National Academy of Sciences of the United States of America, 2011 Sep . 108(37), 15294-15299.

Access URL: https://www.jstor.org/stable/41352086

Trappc9 deficiency causes parent-of-origin dependent microcephaly and obesity.

Authors: Liang, Zhengzheng S.¹, liangzz@fas.harvard.edu, Cimino, Irene², Yalcin, Binnaz³, Raghupathy, Narayanan⁴, Vancollie, Valerie E.¹, Ibarra-Soria, Ximena⁵, Firth, Helen V.⁶, Rimmington, Debra², Farooqi, I. Sadaf⁷, Lelliott, Christopher J.¹, Munger, Steven C.⁴, O'Rahilly, Stephen², Ferguson-Smith, Anne C.⁸, Coll, Anthony P.², liangzz@fas.harvard.edu, Logan, Darren W.¹, liangzz@fas.harvard.edu

Source: PLoS Genetics; 9/2/2020, Vol. 16 Issue 9, p1-26, 26p

Pregnancy and estrogen enhance neural progenitor-cell proliferation in the vomeronasal sensory epithelium.

Authors: Oboti, Livio^1,2, Ibarra-Soria, Ximena³, Pérez-Gómez, Anabel¹, Schmid, Andreas¹, Pyrski, Martina¹, Paschek, Nicole¹, Kircher, Sarah¹, Logan, Darren W.^3,4, Leinders-Zufall, Trese¹, Zufall, Frank¹, Chamero, Pablo^1,5 pablo.chamero@uks.eu

Source: BMC Biology. 11/30/2015, Vol. 13, p1-17. 17p.

Subject Terms: *PROGENITOR cells, *PREGNANCY, *ESTROGEN, *OLFACTORY receptors, *SEX hormones

The Olfactory Transcriptomes of Mice.

Authors: Ibarra-Soria, Ximena¹, Levitin, Maria O.¹, Saraiva, Luis R.^1,2, Logan, Darren W.¹

Source: PLoS Genetics. Sep2014, Vol. 10 Issue 9, p1-17. 17p.

Subject Terms: *LABORATORY mice, *MICE genetics, *PSEUDOGENES, *COMPARATIVE genomics, *OLFACTORY nerve

The genomic basis of vomeronasal-mediated behaviour.

Authors: Ibarra-Soria, Ximena¹, Levitin, Maria, Logan, Darren¹ dl5@sanger.ac.uk

Source: Mammalian Genome. Feb2014, Vol. 25 Issue 1/2, p75-86. 12p.

Subject Terms: *VOMERONASAL organ, *SENSORY neurons, *PHEROMONES, *BEHAVIORAL assessment, *MAMMAL genetics, *PROTEIN genetics

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Single cell census of early murine organogenesis reveals a novel pathway regulating generation of blood progenitors

Authors: Jawaid, Wajid, Ibarra - Soria, Ximena, Pijuan - Sala, Blanca, Ladopoulo, Vasileios, Calero-Nieto, Fernando, Scialdone, Antonio, Jorg, David, Vallier, Ludovic, Simons, Benjamin, Gottgens, Berthold, Marioni, John

Source: In Experimental Hematology September 2017 53 Supplement:S94-S94