Nanopore sequencing of protozoa: Decoding biological information on a string of biochemical molecules into human-readable signals

Authors: Branden Hunter, Timothy Cromwell, Hyunjin Shim

Source: Computational and Structural Biotechnology Journal, Vol 27, Iss , Pp 440-450 (2025)

Subject Terms: Nanopore sequencing, Long-read sequencing, Metagenome, Protozoa, Trypanosome, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2001037025000042; https://doaj.org/toc/2001-0370

Access URL: https://doaj.org/article/5b6308ab7d174f698ab418a8435d0900

Machine Learning–based Photometric Redshifts for Galaxies in the North Ecliptic Pole Wide Field: Catalogs of Spectroscopic and Photometric Redshifts

Authors: Taewan Kim, Jubee Sohn, Ho Seong Hwang, Simon C.-C. Ho, Denis Burgarella, Tomotsugu Goto, Tetsuya Hashimoto, Woong-Seob Jeong, Seong Jin Kim, Matthew A. Malkan, Takamitsu Miyaji, Nagisa Oi, Hyunjin Shim, Hyunmi Song, Narae Hwang, Byeong-Gon Park

Source: The Astrophysical Journal Supplement Series, Vol 277, Iss 2, p 41 (2025)

Subject Terms: Redshift surveys, Galaxies, Galaxy spectroscopy, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/0067-0049

Access URL: https://doaj.org/article/1dcb175b179240938eba4e896e932bcd

Resolved Stellar Mass Estimation of Nearby Late-type Galaxies for the SPHEREx Era: Dependence on Stellar Population Synthesis Models

Authors: Jeong Hwan Lee, Minjin Kim, Taehyun Kim, Hyunjin Shim, Luis C. Ho, Ho Seong Hwang, Hyunmi Song, Dohyeong Kim, Yujin Yang, Woong-Seob Jeong

Source: The Astronomical Journal, Vol 169, Iss 3, p 185 (2025)

Subject Terms: Late-type galaxies, Galaxy stellar content, Astronomy, QB1-991

File Description: electronic resource

Relation: https://doaj.org/toc/1538-3881

Access URL: https://doaj.org/article/ac6567b2fc864c05b48554ee56f210b0

Green Peas in the Southern Sky: Broadband Color Selection and Spectroscopic Follow-up

Authors: Yejin Jeong, Hyunjin Shim, Eunchong Kim, Jeong Hwan Lee

Source: The Astrophysical Journal, Vol 981, Iss 1, p 56 (2025)

Subject Terms: Emission line galaxies, Galaxies, Starburst galaxies, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/1538-4357

Access URL: https://doaj.org/article/578b946a1d40432aaccd0d50674e8624

A pangenome analysis of ESKAPE bacteriophages: the underrepresentation may impact machine learning models

Authors: Jeesu Lee, Branden Hunter, Hyunjin Shim

Source: Frontiers in Molecular Biosciences, Vol 11 (2024)

Subject Terms: ESKAPE pathogens, pangenome, protein prediction, unbalanced datasets, bacteriophages, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2024.1395450/full; https://doaj.org/toc/2296-889X

Access URL: https://doaj.org/article/d0fe4df5fcb84b9fa92f41be32a20d44

Sequencing, Fast and Slow: Profiling Microbiomes in Human Samples with Nanopore Sequencing

Authors: Yunseol Park, Jeesu Lee, Hyunjin Shim

Source: Applied Biosciences, Vol 2, Iss 3, Pp 437-458 (2023)

Subject Terms: diagnostic for bacterial infection, long-read sequencing, human microbiome, nanopore Flongle, native DNA, antimicrobial resistance, Biochemistry, QD415-436, Biology (General), QH301-705.5, Biotechnology, TP248.13-248.65

File Description: electronic resource

Relation: https://www.mdpi.com/2813-0464/2/3/28; https://doaj.org/toc/2813-0464

Access URL: https://doaj.org/article/4f743e07db7b4c4fb297611e8d60adff

CRISPR-Cas-Docker: web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Authors: Ho-min Park, Jongbum Won, Yunseol Park, Esla Timothy Anzaku, Joris Vankerschaver, Arnout Van Messem, Wesley De Neve, Hyunjin Shim

Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-6 (2023)

Subject Terms: CRISPR-Cas systems, In silico docking, Protein tertiary structure, RNA tertiary structure, RNA secondary structure, Machine learning-based classification, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/722e0901285745c1a1937105abefba2a

In silico optimization of RNA–protein interactions for CRISPR-Cas13-based antimicrobials

Authors: Ho-min Park, Yunseol Park, Urta Berani, Eunkyu Bang, Joris Vankerschaver, Arnout Van Messem, Wesley De Neve, Hyunjin Shim

Source: Biology Direct, Vol 17, Iss 1, Pp 1-16 (2022)

Subject Terms: CRISPR-based antimicrobials, RNA–protein interaction, RNA secondary structure, RNA tertiary structure, In silico docking, Drug design, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1745-6150

Access URL: https://doaj.org/article/b308d82b646046378486402cc62f7eb7

Accuracy of Stellar Mass-to-light Ratios of Nearby Galaxies in the Near Infrared

Authors: Taehyun Kim, Minjin Kim, Luis C. Ho, Yang A. Li, Woong-Seob Jeong, Dohyeong Kim, Yongjung Kim, Bomee Lee, Dongseob Lee, Jeong Hwan Lee, Jeonghyun Pyo, Hyunjin Shim, Suyeon Son, Hyunmi Song, Yujin Yang

Source: The Astronomical Journal, Vol 169, Iss 1, p 44 (2024)

Subject Terms: Galaxies, Astronomy, QB1-991

File Description: electronic resource

Relation: https://doaj.org/toc/1538-3881

Access URL: https://doaj.org/article/c1f112785f1c4e5784b01c4f60ae9029

Exploring Unobscured Quasi-stellar Objects in the Southern Hemisphere with KS4

Authors: Yongjung Kim, Minjin Kim, Myungshin Im, Seo-Won Chang, Mankeun Jeong, Woowon Byun, Joonho Kim, Dohyeong Kim, Hyunjin Shim, Hyunmi Song

Source: The Astrophysical Journal Supplement Series, Vol 275, Iss 2, p 46 (2024)

Subject Terms: Quasars, Photometry, Catalogs, Galaxies, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/0067-0049

Access URL: https://doaj.org/article/17fdd28e12424a63859ae61405d0e4fd

Erratum: 'Photometric Selection of Unobscured QSOs at the Ecliptic Poles: KMTNet in the South Field and Pan-STARRS in the North Field' (2023, ApJS, 268, 57)

Authors: Woowon Byun, Minjin Kim, Yun-Kyeong Sheen, Dongseob Lee, Luis C. Ho, Jongwan Ko, Kwang-Il Seon, Hyunjin Shim, Dohyeong Kim, Yongjung Kim, Joon Hyeop Lee, Hyunjin Jeong, Jong-Hak Woo, Woong-Seob Jeong, Byeong-Gon Park, Sang Chul Kim, Yongseok Lee, Sang-Mok Cha, Hyunmi Song, Donghoon Son, Yujin Yang

Source: The Astrophysical Journal Supplement Series, Vol 272, Iss 2, p 50 (2024)

Subject Terms: Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/0067-0049

Access URL: https://doaj.org/article/6792b96805bc49c3a3a38e3398615bf6

SCUBA-2 Ultra Deep Imaging EAO Survey (STUDIES). V. Confusion-limited Submillimeter Galaxy Number Counts at 450 μm and Data Release for the COSMOS Field

Authors: Zhen-Kai Gao, Chen-Fatt Lim, Wei-Hao Wang, Chian-Chou Chen, Ian Smail, Scott C. Chapman, Xian Zhong Zheng, Hyunjin Shim, Tadayuki Kodama, Yiping Ao, Siou-Yu Chang, David L. Clements, James S. Dunlop, Luis C. Ho, Yun-Hsin Hsu, Chorng-Yuan Hwang, Ho Seong Hwang, M. P. Koprowski, Douglas Scott, Stephen Serjeant, Yoshiki Toba, Sheona A. Urquhart

Source: The Astrophysical Journal, Vol 971, Iss 1, p 117 (2024)

Subject Terms: Catalogs, Cosmic background radiation, Galaxy evolution, High-redshift galaxies, Submillimeter astronomy, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/1538-4357

Access URL: https://doaj.org/article/62eb05dc86594c2798a6d4e66ec14cab

The Calibration of Polycyclic Aromatic Hydrocarbon Dust Emission as a Star Formation Rate Indicator in the AKARI NEP Survey

Authors: Helen Kyung Kim, Matthew A. Malkan, Toshinobu Takagi, Nagisa Oi, Denis Burgarella, Takamitsu Miyaji, Hyunjin Shim, Hideo Matsuhara, Tomotsugu Goto, Yoichi Ohyama, Veronique Buat, Seong Jin Kim

Source: The Astrophysical Journal, Vol 974, Iss 2, p 253 (2024)

Subject Terms: Star formation, Polycyclic aromatic hydrocarbons, Interstellar dust, Infrared galaxies, Infrared photometry, Spectral energy distribution, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/1538-4357

Access URL: https://doaj.org/article/9810b024b04343f6a789b6cd9b055267

Using a knowledge structure perspective to improve in-service teachers’ content knowledge about active galaxies

Authors: Heungjin Eom, Hyunjin Shim

Source: Physical Review Physics Education Research, Vol 19, Iss 2, p 020108 (2023)

Subject Terms: Special aspects of education, LC8-6691, Physics, QC1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2469-9896

Access URL: https://doaj.org/article/404166b9579f4c249cf58cdfe1867e3b

Investigating the Genomic Background of CRISPR-Cas Genomes for CRISPR-Based Antimicrobials

Authors: Hyunjin Shim

Source: Evolutionary Bioinformatics, Vol 18 (2022)

Subject Terms: Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/1176-9343

Access URL: https://doaj.org/article/6a0bb485b37a40218b313631cdae8c75

Estimators of Bolometric Luminosity and Black Hole Mass with Mid-infrared Continuum Luminosities for Dust-obscured Quasars: Prevalence of Dust-obscured SDSS Quasars

Authors: Dohyeong Kim, Myungshin Im, Minjin Kim, Yongjung Kim, Suhyun Shin, Hyunjin Shim, Hyunmi Song

Source: The Astrophysical Journal, Vol 954, Iss 2, p 156 (2023)

Subject Terms: Supermassive black holes, Quasars, Active galactic nuclei, Infrared astronomy, Galaxy evolution, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/1538-4357

Access URL: https://doaj.org/article/aa492c5b990040468e1c431da1339803

Metallicity–PAH Relation of MIR-selected Star-forming Galaxies in AKARI North Ecliptic Pole-wide Survey

Authors: Hyunjin Shim, Ho Seong Hwang, Woong-Seob Jeong, Yoshiki Toba, Minjin Kim, Dohyeong Kim, Hyunmi Song, Tetsuya Hashimoto, Takago Nakagawa, Ambra Nanni, William J. Pearson, Toshinobu Takagi

Source: The Astronomical Journal, Vol 165, Iss 2, p 31 (2023)

Subject Terms: Galaxy evolution, Infrared galaxies, Polycyclic aromatic hydrocarbons, Spectral energy distribution, Galaxy properties, Astronomy, QB1-991

File Description: electronic resource

Relation: https://doaj.org/toc/1538-3881

Access URL: https://doaj.org/article/5c5f77febbaf4b4cb6f7602d04b3351e

The JCMT SCUBA-2 Survey of the James Webb Space Telescope North Ecliptic Pole Time-Domain Field

Authors: Minhee Hyun, Myungshin Im, Ian R. Smail, William D. Cotton, Jack E. Birkin, Satoshi Kikuta, Hyunjin Shim, Christopher N. A. Willmer, James J. Condon, Rogier A. Windhorst, Seth H. Cohen, Rolf A. Jansen, Chun Ly, Yuichi Matsuda, Giovanni G. Fazio, A. M. Swinbank, Haojing Yan

Source: The Astrophysical Journal Supplement Series, Vol 264, Iss 1, p 19 (2023)

Subject Terms: Galaxy evolution, High-redshift galaxies, Galaxy formation, Submillimeter astronomy, Galaxy counts, Ultraluminous infrared galaxies, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/0067-0049

Access URL: https://doaj.org/article/1509940e11c24e32b32748de0019bcfe

Three Innovations of Next-Generation Antibiotics: Evolvability, Specificity, and Non-Immunogenicity

Authors: Hyunjin Shim

Source: Antibiotics, Vol 12, Iss 2, p 204 (2023)

Subject Terms: antimicrobial resistance, alternative antibiotics, next-generation antibiotics, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2079-6382/12/2/204; https://doaj.org/toc/2079-6382

Access URL: https://doaj.org/article/1c2139edfb1342afb9976a6dd86aa18e

Photometric Selection of Unobscured QSOs at the Ecliptic Poles: KMTNet in the South Field and Pan-STARRS in the North Field

Authors: Woowon Byun, Minjin Kim, Yun-Kyeong Sheen, Dongseob Lee, Luis C. Ho, Jongwan Ko, Kwang-Il Seon, Hyunjin Shim, Dohyeong Kim, Yongjung Kim, Joon Hyeop Lee, Hyunjin Jeong, Jong-Hak Woo, Woong-Seob Jeong, Byeong-Gon Park, Sang Chul Kim, Yongseok Lee, Sang-Mok Cha, Hyunmi Song, Donghoon Son, Yujin Yang

Source: The Astrophysical Journal Supplement Series, Vol 268, Iss 2, p 57 (2023)

Subject Terms: Quasars, Photometry, Catalogs, Galaxies, Astrophysics, QB460-466

File Description: electronic resource

Relation: https://doaj.org/toc/0067-0049

Access URL: https://doaj.org/article/de42569e2f334ce09eb7470eaa2a0e05