UCSF ChimeraX: Structure visualization for researchers, educators, and developers

Authors: Pettersen, Eric F., Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Couch, Gregory S., Croll, Tristan I., Morris, John H., Ferrin, Thomas E.

Source: Protein science. 30(1):70-82

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114175782.0x000001&indx=1&recIds=ETOCvdc_100114175782.0x000001

Evolutionary Conservation Predicts Function of Variants of the Human Organic Cation Transporter, OCT1

Authors: Shu, Yan, Leabman, Maya K., Feng, Bo, Mangravite, Lara M., Huang, Conrad C., Stryke, Doug, Kawamoto, Michiko, Johns, Susan J., DeYoung, Joseph, Carlson, Elaine, Ferrin, Thomas E., Herskowitz, Ira, Giacomini, Kathleen M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2003 May . 100(10), 5902-5907.

Access URL: https://www.jstor.org/stable/3147515

Natural Variation in Human Membrane Transporter Genes Reveals Evolutionary and Functional Constraints

Authors: Leabman, Maya K., Huang, Conrad C., DeYoung, Joseph, Carlson, Elaine J., Taylor, Travis R., de la Cruz, Melanie, Johns, Susan J., Stryke, Doug, Kawamoto, Michiko, Urban, Thomas J., Kroetz, Deanna L., Ferrin, Thomas E., Clark, Andrew G., Risch, Neil, Herskowitz, Ira, Giacomini, Kathleen M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2003 May . 100(10), 5896-5901.

Access URL: https://www.jstor.org/stable/3147514

UCSF Chimera, MODELLER, and IMP: An integrated modeling system

Authors: Yang, Zheng, Lasker, Keren, Schneidman-Duhovny, Dina, Webb, Ben, Huang, Conrad C., Pettersen, Eric F., Goddard, Thomas D., Meng, Elaine C., Sali, Andrej, Ferrin, Thomas E.

Source: In Journal of Structural Biology September 2012 179(3):269-278

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information.

Authors: Morris, John H¹, Soman, Karthik², Akbas, Rabia E², Zhou, Xiaoyuan², Smith, Brett³, Meng, Elaine C¹, Huang, Conrad C¹, Cerono, Gabriel², Schenk, Gundolf⁴, Rizk-Jackson, Angela⁴, Harroud, Adil², Sanders, Lauren⁵, Costes, Sylvain V⁵, Bharat, Krish², Chakraborty, Arjun², Pico, Alexander R⁶, Mardirossian, Taline⁷, Keiser, Michael⁷, Tang, Alice⁸, Hardi, Josef⁹

Source: Bioinformatics; Feb2023, Vol. 39 Issue 2, p1-7, 7p

The Human Multidrug Resistance Protein 4 (MRP4, ABCC4): Functional Analysis of a Highly Polymorphic Gene

Authors: Abla, Nada, Chinn, Leslie W., Nakamura, Tsutomu, Liu, Li, Huang, Conrad C., Johns, Susan J., Kawamoto, Michiko, Stryke, Doug, Taylor, Travis R., Ferrin, Thomas E., Giacomini, Kathleen M., Kroetz, Deanna L. ^*

Source: In The Journal of Pharmacology and Experimental Therapeutics June 2008 325(3):859-868

Visualizing density maps with UCSF Chimera

Authors: Goddard, Thomas D., Huang, Conrad C., Ferrin, Thomas E.

Source: In Journal of Structural Biology 2007 157(1):281-287

Interaction of Methotrexate with Organic-Anion Transporting Polypeptide 1A2 and Its Genetic Variants

Authors: Badagnani, Ilaria, Castro, Richard A., Taylor, Travis R., Brett, Claire M., Huang, Conrad C., Stryke, Douglas, Kawamoto, Michiko, Johns, Susan J., Ferrin, Thomas E., Carlson, Elaine J., Burchard, Esteban G., Giacomini, Kathleen M. ^*

Source: In The Journal of Pharmacology and Experimental Therapeutics August 2006 318(2):521-529

Software Extensions to UCSF Chimera for Interactive Visualization of Large Molecular Assemblies

Authors: Goddard, Thomas D., Huang, Conrad C., Ferrin, Thomas E. ^*

Source: In Structure 2005 13(3):473-482

Comparison of methods for genomic localization of gene trap sequences

Authors: Ferrin Thomas E, Kawamoto Michiko, Stryke Doug, Huang Conrad C, Harper Courtney A, Babbitt Patricia C

Source: BMC Genomics, Vol 7, Iss 1, p 236 (2006)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/7/236; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/02b2d58c17fa49df9b19507fe8dddc93

Tools for integrated sequence-structure analysis with UCSF Chimera

Authors: Huang Conrad C, Couch Gregory S, Pettersen Eric F, Meng Elaine C, Ferrin Thomas E

Source: BMC Bioinformatics, Vol 7, Iss 1, p 339 (2006)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/7/339; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/6c917b4880c94d388a0b920280b1be23

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structureViz: linking Cytoscape and UCSF Chimera.

Authors: Morris, John H., Huang, Conrad C., Babbitt, Patricia C.

Source: Bioinformatics; September 1 2007, Vol. 23 Issue 17, p2345-2347, 3p

PharmGKB Update: I. Genetic Variants of the Organic Cation Transporter 2 (OCT2, SLC22A2)

Authors: Leabman, Maya K., Huang, Conrad C., Stryke, Doug, Johns, Susan J., Kawamoto, Michiko, Ferrin, Thomas E., DeYoung, Joseph, Taylor, Travis R., De La Cruz, Melanie, Herskowitz, Ira, Giacomini, Kathleen M.

Source: In Pharmacological Reviews September 2003 55(3):399-399

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REPRESENTING STRUCTURE-FUNCTION RELATIONSHIPS IN MECHANISTICALLY DIVERSE ENZYME SUPERFAMILIES.

Authors: PEGG, SCOTT C.-H., BROWN, SHOSHANA, OJHA, SUNIL, HUANG, CONRAD C., FERRIN, THOMAS E., BABBITT, PATRICIA C.

Source: Biocomputing 2005 - Proceedings of the Pacific Symposium; 2004, p358-369, 12p

Subject Terms: ENZYMES, PROTEIN engineering, CHEMICAL reactions, CHEMICAL amplification, GRAPHICAL user interfaces