Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

Authors: Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guesdes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, M. Isabel, Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, G. Craig, Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, C. Robin, Finkers, Richard

Source: In Molecular Plant 7 March 2022 15(3):520-536

An updated gene atlas for maize reveals organ‐specific and stress‐induced genes

Authors: Hoopes, Genevieve M., Hamilton, John P., Wood, Joshua C., Esteban, Eddi, Pasha, Asher, Vaillancourt, Brieanne, Provart, Nicholas J., Buell, C. Robin

Source: Plant journal. 97(6):1154-1167

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100082966216.0x000001&indx=1&recIds=ETOCvdc_100082966216.0x000001

Keeping time in the dark: Potato diel and circadian rhythmic gene expression reveals tissue‐specific circadian clocks

Authors: Hoopes, Genevieve M., Zarka, Daniel, Feke, Ann, Acheson, Kaitlyn, Hamilton, John P., Douches, David, Buell, C. Robin, Farré, Eva M.

Source: Plant direct. 6(7)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157141226.0x000001&indx=1&recIds=ETOCvdc_100157141226.0x000001

TrackMate: An open and extensible platform for single-particle tracking

Authors: Tinevez, Jean-Yves, Perry, Nick, Schindelin, Johannes, Hoopes, Genevieve M., Reynolds, Gregory D., Laplantine, Emmanuel, Bednarek, Sebastian Y., Shorte, Spencer L., Eliceiri, Kevin W.

Source: In Methods 15 February 2017 115:80-90

The tepary bean genome provides insight into evolution and domestication under heat stress.

Authors: Moghaddam, Samira Mafi, Oladzad, Atena, Koh, Chushin, Ramsay, Larissa, Hart, John P., Mamidi, Sujan, Hoopes, Genevieve, Sreedasyam, Avinash, Wiersma, Andrew, Zhao, Dongyan, Grimwood, Jane, Hamilton, John P., Jenkins, Jerry, Vaillancourt, Brieanne, Wood, Joshua C., Schmutz, Jeremy, Kagale, Sateesh, Porch, Timothy, Bett, Kirstin E., Buell, C. Robin

Source: Nature Communications; 5/11/2021, Vol. 12 Issue 1, p1-14, 14p

Subject Terms: COMMON bean, BEANS, FOOD crops, GENOMES, DISEASE resistance of plants, LEGUMES

Geographic Terms: SONORAN Desert

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