Repurposing the scientific literature with vision-language models

Authors: Alyakin, Anton, Stryker, Jaden, Alber, Daniel Alexander, Sangwon, Karl L., Duderstadt, Brandon, Save, Akshay, Kurland, David, Frome, Spencer, Singh, Shrutika, Zhang, Jeff, Yang, Eunice, Park, Ki Yun, Orillac, Cordelia, Valliani, Aly A., Neifert, Sean, Liu, Albert, Patel, Aneek, Livia, Christopher, Lau, Darryl, Laufer, Ilya, Rozman, Peter A., Hidalgo, Eveline Teresa, Riina, Howard, Feng, Rui, Hollon, Todd, Aphinyanaphongs, Yindalon, Golfinos, John G., Snyder, Laura, Leuthardt, Eric, Kondziolka, Douglas, Oermann, Eric Karl

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Computation and Language, Computer Science - Human-Computer Interaction

Access URL: http://arxiv.org/abs/2502.19546

Extending SEEDS to a Supervoxel Algorithm for Medical Image Analysis

Authors: Zhao, Chenhui, Jiang, Yan, Hollon, Todd C.

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2502.02409

Super-resolution of biomedical volumes with 2D supervision

Authors: Jiang, Cheng, Gedeon, Alexander, Lyu, Yiwei, Landgraf, Eric, Zhang, Yufeng, Hou, Xinhai, Kondepudi, Akhil, Chowdury, Asadur, Lee, Honglak, Hollon, Todd

Source: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) CVPRW Computer Vision and Pattern Recognition Workshops (CVPRW), 2024 IEEE/CVF Conference on. :6966-6977 Jun, 2024

Relation: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)

Hierarchical Discriminative Learning Improves Visual Representations of Biomedical Microscopy

Authors: Jiang, Cheng, Hou, Xinhai, Kondepudi, Akhil, Chowdury, Asadur, Freudiger, Christian W., Orringer, Daniel A., Lee, Honglak, Hollon, Todd C.

Source: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) CVPR Computer Vision and Pattern Recognition (CVPR), 2023 IEEE/CVF Conference on. :19798-19808 Jun, 2023

Relation: 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)

Step-Calibrated Diffusion for Biomedical Optical Image Restoration

Authors: Lyu, Yiwei, Cha, Sung Jik, Jiang, Cheng, Chowdury, Asadur, Hou, Xinhai, Harake, Edward, Kondepudi, Akhil, Freudiger, Christian, Lee, Honglak, Hollon, Todd C.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2403.13680

A self-supervised framework for learning whole slide representations

Authors: Hou, Xinhai, Jiang, Cheng, Kondepudi, Akhil, Lyu, Yiwei, Chowdury, Asadur, Lee, Honglak, Hollon, Todd C.

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2402.06188

Development and validation of an artificial intelligence model to accurately predict spinopelvic parameters

Authors: Harake, Edward S., Linzey, Joseph R., Jiang, Cheng, Joshi, Rushikesh S., Zaki, Mark M., Jones, Jaes C., Khalsa, Siri S., Lee, John H., Wilseck, Zachary, Joseph, Jacob R., Hollon, Todd C., Park, Paul

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2402.06185

Fine-grained Text Style Transfer with Diffusion-Based Language Models

Authors: Lyu, Yiwei, Luo, Tiange, Shi, Jiacheng, Hollon, Todd C., Lee, Honglak

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2305.19512

Artificial-intelligence-based molecular classification of diffuse gliomas using rapid, label-free optical imaging

Authors: Hollon, Todd C., Jiang, Cheng, Chowdury, Asadur, Nasir-Moin, Mustafa, Kondepudi, Akhil, Aabedi, Alexander, Adapa, Arjun, Al-Holou, Wajd, Heth, Jason, Sagher, Oren, Lowenstein, Pedro, Castro, Maria, Wadiura, Lisa Irina, Widhalm, Georg, Neuschmelting, Volker, Reinecke, David, von Spreckelsen, Niklas, Berger, Mitchel S., Hervey-Jumper, Shawn L., Golfinos, John G., Snuderl, Matija, Camelo-Piragua, Sandra, Freudiger, Christian, Lee, Honglak, Orringer, Daniel A.

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2303.13610

OpenSRH: optimizing brain tumor surgery using intraoperative stimulated Raman histology

Authors: Jiang, Cheng, Chowdury, Asadur, Hou, Xinhai, Kondepudi, Akhil, Freudiger, Christian W., Conway, Kyle, Camelo-Piragua, Sandra, Orringer, Daniel A., Lee, Honglak, Hollon, Todd C.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2206.08439

Rapid Automated Analysis of Skull Base Tumor Specimens Using Intraoperative Optical Imaging and Artificial Intelligence

Authors: Jiang, Cheng, Bhattacharya, Abhishek, Linzey, Joseph, Joshi, Rushikesh S., Cha, Sung Jik, Srinivasan, Sudharsan, Alber, Daniel, Kondepudi, Akhil, Urias, Esteban, Pandian, Balaji, Al-Holou, Wajd, Sullivan, Steve, Thompson, B. Gregory, Heth, Jason, Freudiger, Chris, Khalsa, Siri, Pacione, Donato, Golfinos, John G., Camelo-Piragua, Sandra, Orringer, Daniel A., Lee, Honglak, Hollon, Todd

Source: Neurosurgery 90 (6), 758-767, 2022

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2108.03555

Combined cytotoxic and immune-stimulatory gene therapy for primary adult high-grade glioma: a phase 1, first-in-human trial

Authors: Umemura, Yoshie, Orringer, Daniel, Junck, Larry, Varela, Maria L, West, Molly E J, Faisal, Syed M, Comba, Andrea, Heth, Jason, Sagher, Oren, Leung, Denise, Mammoser, Aaron, Hervey-Jumper, Shawn, Zamler, Daniel, Yadav, Viveka N, Dunn, Patrick, Al-Holou, Wajd, Hollon, Todd, Kim, Michelle M, Wahl, Daniel R, Camelo-Piragua, Sandra, Lieberman, Andrew P, Venneti, Sriram, McKeever, Paul, Lawrence, Theodore, Kurokawa, Ryo, Sagher, Karen, Altshuler, David, Zhao, Lili, Muraszko, Karin, Castro, Maria G, Lowenstein, Pedro R

Source: Lancet oncology. 24(9):1042-1052

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196081198.0x000001&indx=1&recIds=ETOCvdc_100196081198.0x000001

Methods and Impact for Using Federated Learning to Collaborate on Clinical Research

Authors: Cheung, Alexander T. M., Nasir-Moin, Mustafa, (Fred) Kwon, Young Joon, Guan, Jiahui, Liu, Chris, Jiang, Lavender, Raimondo, Christian, Chotai, Silky, Chambless, Lola, Ahmad, Hasan S., Chauhan, Daksh, Yoon, Jang W., Hollon, Todd, Buch, Vivek, Kondziolka, Douglas, Chen, Dinah, Al-Aswad, Lama A., Aphinyanaphongs, Yindalon, Oermann, Eric Karl

Source: Neurosurgery. 92(2):431-438

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194387180.0x000001&indx=1&recIds=ETOCvdc_100194387180.0x000001

A comparison of ventricular volume and linear indices in predicting shunt dependence in aneurysmal subarachnoid hemorrhage

Authors: Talbot-Stetsko, Haley K., Hollon, Todd C., Maher, Cormac O., Pandey, Aditya S., Khalsa, Siri Sahib S.

Source: In World Neurosurgery: X July 2023 19

Subclonal evolution and expansion of spatially distinct THY1-positive cells is associated with recurrence in glioblastoma

Authors: Al-Holou, Wajd N., Wang, Hanxiao, Ravikumar, Visweswaran, Shankar, Sunita, Oneka, Morgan, Fehmi, Ziad, Verhaak, Roel GW, Kim, Hoon, Pratt, Drew, Camelo-Piragua, Sandra, Speers, Corey, Wahl, Daniel R, Hollon, Todd, Sagher, Oren, Heth, Jason A, Muraszko, Karin M., Lawrence, Theodore S., de Carvalho, Ana C, Mikkelsen, Tom, Rao, Arvind, Rehemtulla, Alnawaz

Source: In Neoplasia February 2023 36

Clinical Translation of Stimulated Raman Histology

Authors: Orillac, Cordelia, Hollon, Todd, Orringer, Daniel A.

Source: Methods in molecular biology. 2393:225-236

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN628160101&indx=1&recIds=ETOCRN628160101

Ventricular Volume Change as a Predictor of Shunt-Dependent Hydrocephalus in Aneurysmal Subarachnoid Hemorrhage

Authors: Talbot-Stetsko, Haley K., Pawlowski, Kristen D., Aaron, Bryan L., Adapa, Arjun R., Altshuler, David B., Srinivasan, Sudharsan, Pandey, Aditya S., Maher, Cormac O., Hollon, Todd C., Khalsa, Siri Sahib S.

Source: World neurosurgery. 157:e57-e65

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193617724.0x000001&indx=1&recIds=ETOCvdc_100193617724.0x000001

Rapid Automated Analysis of Skull Base Tumor Specimens Using Intraoperative Optical Imaging and Artificial Intelligence

Authors: Jiang, Cheng, Bhattacharya, Abhishek, Linzey, Joseph R., Joshi, Rushikesh S., Cha, Sung Jik, Srinivasan, Sudharsan, Alber, Daniel, Kondepudi, Akhil, Urias, Esteban, Pandian, Balaji, Al-Holou, Wajd N., Sullivan, Stephen E., Thompson, B. Gregory, Heth, Jason A., Freudiger, Christian W., Khalsa, Siri Sahib S., Pacione, Donato R., Golfinos, John G., Camelo-Piragua, Sandra, Orringer, Daniel A., Lee, Honglak, Hollon, Todd C.

Source: Neurosurgery. 90(6):758-767

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190870521.0x000001&indx=1&recIds=ETOCvdc_100190870521.0x000001

Extent of Resection Research in Skull Base Neurosurgery: Previous Studies and Future Directions

Authors: Hollon, Todd, Fredrickson, Vance, Couldwell, William T.

Source: World neurosurgery. 161:396-404

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165175727.0x000001&indx=1&recIds=ETOCvdc_100165175727.0x000001

Foundation models for fast, label-free detection of glioma infiltration

Authors: Kondepudi, Akhil, Pekmezci, Melike, Hou, Xinhai, Scotford, Katie, Jiang, Cheng, Rao, Akshay, Harake, Edward S., Chowdury, Asadur, Al-Holou, Wajd, Wang, Lin, Pandey, Aditya, Lowenstein, Pedro R., Castro, Maria G., Koerner, Lisa Irina, Roetzer-Pejrimovsky, Thomas, Widhalm, Georg, Camelo-Piragua, Sandra, Movahed-Ezazi, Misha, Orringer, Daniel A., Lee, Honglak, Freudiger, Christian, Berger, Mitchel, Hervey-Jumper, Shawn, Hollon, Todd

Source: Nature; January 2025, Vol. 637 Issue: 8045 p439-445, 7p