Sensing chemical-induced DNA damage using CRISPR/Cas9-mediated gene-deletion yeast-reporter strains.

Authors: Yamamoto, Kosuke¹, Tochikawa, Shintaro¹, Miura, Yuuki¹, Matsunobu, Shogo¹, Hirose, Yuu^1,2, Eki, Toshihiko¹, eki@chem.tut.ac.jp

Source: Applied Microbiology & Biotechnology; 2/1/2024, Vol. 108 Issue 1, p1-17, 17p

Reduced graphene oxide increases cells with enlarged outer membrane of Citrifermentans bremense and exopolysaccharides secretion

Authors: Meng, Lingyu, Xie, Li, Hirose, Yuu, Nishiuchi, Takumi, Yoshida, Naoko

Source: In Biosensors and Bioelectronics 15 December 2022 218

Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE

Authors: Nagae, Takayuki, Unno, Masashi, Koizumi, Taiki, Miyanoiri, Yohei, Fujisawa, Tomotsumi, Masui, Kento, Kamo, Takanari, Wada, Kei, Eki, Toshihiko, Ito, Yutaka, Hirose, Yuu, Mishima, Masaki

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 May . 118(20), 1-10.

Access URL: https://www.jstor.org/stable/27040412

16S rRNA Sequencing Detected Profftella, Liberibacter, Wolbachia , and Diplorickettsia from Relatives of the Asian Citrus Psyllid

Authors: Nakabachi, Atsushi, Malenovský, Igor, Gjonov, Ilia, Hirose, Yuu

Source: Microbial Ecology, 2020 Aug 01. 80(2), 410-422.

Access URL: https://www.jstor.org/stable/48740081

Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters

Authors: Shimura, Yohei, Fujisawa, Takatomo, Hirose, Yuu, Misawa, Naomi, Kanesaki, Yu, Nakamura, Yasukazu, Kawachi, Masanobu

Source: In Harmful Algae January 2021 101

Microbiome of psyllids of the family Aphalaridae, including Aphalara itadori, a biocontrol agent against Reynoutria spp.

Authors: Nishino, Kyosuke, Inoue, Hiromitsu, Hirose, Yuu, Nakabachi, Atsushi

Source: Entomologia Experimentalis et Applicata; Nov2024, Vol. 172 Issue 11, p1033-1045, 13p

Subject Terms: JAPANESE knotweed, FLUORESCENCE in situ hybridization, BIOLOGICAL pest control agents, INSECT reproduction, PARASITIC insects

Metabolic Control of Gametophore Shoot Formation through Arginine in the Moss Physcomitrium patens

Authors: Kawade, Kensuke, Horiguchi, Gorou, Hirose, Yuu, Oikawa, Akira, Hirai, Masami Yokota, Saito, Kazuki, Fujita, Tomomichi, Tsukaya, Hirokazu

Source: In Cell Reports 8 September 2020 32(10)

Efficient synthesis of γ-oxo carboxylic esters and isotope-labeled 5-aminolevulinic acid (5-ALA) by Pd(OAc)2/phosphonium tetrafluoroborates catalyzed Fukuyama coupling reaction

Authors: Aoyama, Hiroshi, Iizuka, Yusuke, Kawanishi, Ryouta, Shibatomi, Kazutaka, Arakawa, Yuki, Tsuji, Hideto, Hirose, Yuu, Mishima, Masaki

Source: Tetrahedron letters. 123

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191878324.0x000001&indx=1&recIds=ETOCvdc_100191878324.0x000001

Protochromic absorption changes in the two-cysteine photocycle of a blue/orange cyanobacteriochrome

Alternate Title: Bilin deprotonation in the two-Cys photocycle (English)

Authors: Sato, Teppei, Kikukawa, Takashi, Miyoshi, Risako, Kajimoto, Kousuke, Yonekawa, Chinatsu, Fujisawa, Tomotsumi, Unno, Masashi, Eki, Toshihiko, Hirose, Yuu

Source: In Journal of Biological Chemistry 6 December 2019 294(49):18909-18922

Diverse Chromatic Acclimation Processes Regulating Phycoerythrocyanin and Rod-Shaped Phycobilisome in Cyanobacteria

Authors: Hirose, Yuu, Chihong, Song, Watanabe, Mai, Yonekawa, Chinatsu, Murata, Kazuyoshi, Ikeuchi, Masahiko, Eki, Toshihiko

Source: In Molecular Plant 6 May 2019 12(5):715-725

Characterization of a novel class of glyoxylate reductase belonging to the β-hydroxyacid dehydrogenase family in Acetobacter aceti

Authors: Kumsab, Jakkaphan, Tobe, Ryuta, Kurihara, Tatsuo, Hirose, Yuu, Omori, Taketo, Mihara, Hisaaki

Source: Bioscience, biotechnology, and biochemistry. 84(11):2303-2310

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111260105.0x000001&indx=1&recIds=ETOCvdc_100111260105.0x000001

Unusual features in the photosynthetic machinery of Halorhodospira halochloris DSM 1059 revealed by complete genome sequencing

Authors: Tsukatani, Yusuke, Hirose, Yuu, Harada, Jiro, Yonekawa, Chinatsu, Tamiaki, Hitoshi

Source: Photosynthesis research. 140(3):311-319

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127719446.0x000001&indx=1&recIds=ETOCvdc_100127719446.0x000001

Acidophilic green algal genome provides insights into adaptation to an acidic environment

Authors: Hirooka, Shunsuke, Hirose, Yuu, Kanesaki, Yu, Higuchi, Sumio, Fujiwara, Takayuki, Onuma, Ryo, Era, Atsuko, Ohbayashi, Ryudo, Uzuka, Akihiro, Nozaki, Hisayoshi, Yoshikawa, Hirofumi, Miyagishima, Shin-ya

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Sep . 114(39), E8304-E8313.

Access URL: https://www.jstor.org/stable/26488074

The gene transfer agent-like particle of the marine phototrophic bacterium Rhodovulum sulfidophilum

Authors: Nagao, Nobuyoshi, Yamamoto, Junya, Komatsu, Hiroyuki, Suzuki, Hiromichi, Hirose, Yuu, Umekage, So, Ohyama, Takashi, Kikuchi, Yo

Source: In Biochemistry and Biophysics Reports December 2015 4:369-374

A novel characteristic of a phytoplankton as a potential source of straight-chain alkanes.

Authors: Harada, Naomi¹ haradan@jamstec.go.jp, Hirose, Yuu², Chihong, Song³, Kurita, Hirofumi², Sato, Miyako¹, Onodera, Jonaotaro¹, Murata, Kazuyoshi³, Itoh, Fumihiro⁴

Source: Scientific Reports. 7/19/2021, Vol. 11 Issue 1, p1-12. 12p.

Subject Terms: *PHYTOPLANKTON, *ALKANES, *BIOSYNTHESIS, *HYDROCARBONS, *FOSSIL fuels

Sensing chemical-induced genotoxicity and oxidative stress via yeast-based reporter assays using NanoLuc luciferase.

Authors: Shichinohe, Minami, Ohkawa, Shun, Hirose, Yuu, Eki, Toshihiko

Source: PLoS ONE; 11/22/2023, Vol. 18 Issue 11, p1-19, 19p

Subject Terms: GENETIC toxicology, OXIDATIVE stress, REPORTER genes, GENE expression, HYDROGEN peroxide, ZINC oxide, DNA damage

Distinct prokaryotic and eukaryotic communities and networks in two agricultural fields of central Japan with different histories of maize–cabbage rotation.

Authors: Kenmotsu, Harutaro, Masuma, Tomoro, Murakami, Junya, Hirose, Yuu, Eki, Toshihiko

Source: Scientific Reports; 11/18/2023, Vol. 13 Issue 1, p1-14, 14p

Subject Terms: AGRICULTURE, JAPANESE history, NUCLEOTIDE sequencing, ROTATIONAL motion, RIBOSOMAL RNA, CROP rotation, CABBAGE, COLE crops

Geographic Terms: JAPAN

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle

Authors: Hirose, Yuu, Rockwell, Nathan C., Nishiyama, Kaori, Narikawa, Rei, Ukaji, Yutaka, Inomata, Katsuhiko, Lagarias, J. Clark, Ikeuchi, Masahiko

Source: Proceedings of the National Academy of Sciences of the United States of America, 2013 Mar . 110(13), 4974-4979.

Access URL: https://www.jstor.org/stable/42583395

Cyanobacteriochrome CcaS regulates phycoerythrin accumulation in Nostoc punctiforme , a group II chromatic adapter

Authors: Hirose, Yuu, Narikawa, Rei, Katayama, Mitsunori, Ikeuchi, Masahiko

Source: Proceedings of the National Academy of Sciences of the United States of America, 2010 May 01. 107(19), 8854-8859.

Access URL: https://www.jstor.org/stable/25681506

Cyanobacteriochrome CcaS Is the Green Light Receptor That Induces the Expression of Phycobilisome Linker Protein

Authors: Hirose, Yuu, Shimada, Takashi, Narikawa, Rei, Katayama, Mitsunori, Ikeuchi, Masahiko

Source: Proceedings of the National Academy of Sciences of the United States of America, 2008 Jul . 105(28), 9528-9533.

Access URL: https://www.jstor.org/stable/25463007