Individualized Cell-Free DNA Monitoring With Chromosomal Junctions for Mesothelioma

Authors: Parikh, Kaushal, Harris, Faye R., Karagouga, Giannoula, Schrandt, Amy, Mandrekar, Jay, Johnson, Sarah, McCune, Alexa, Sadeghian, Dorsay, Roy, Debarshi, Polonis, Katarzyna, Gaitatzes, Athanasios, Bungum, Aaron O., Edell, Eric S., Borad, Mitesh J., Peikert, Tobias, Kosari, Farhad, Cheville, John, Vasmatzis, George, Mansfield, Aaron S.

Source: In JTO Clinical and Research Reports December 2024 5(12)

Epigenomics may begin to explain in vitro differential response to hypomethylating agents in MMR-D hypermethylated endometrial cancer

Authors: El Khoury, Louis Y, Lin, Wan Hsin, Smadbeck, James B, Barrett, Michael T, Sadeghian, Dorsay, McCune, Alexa F, Karagouga, Giannoula, Cheville, John C, Harris, Faye R, Kinsella, Lindsey M, Feathers, Ryan W, Schafer Klein, Janet L, Walther-Antonio, Marina RS, Johnson, Sarah H, Penheiter, Alan R, Cucinella, Giuseppe, Schivardi, Gabriella, Bhagwate, Aditya, Borad, Mitesh J, Mansfield, Aaron S, Murphy, Stephen J, Mariani, Andrea, Vasmatzis, George, Anastasiadis, Panos Z, Weroha, Saravut J, Larish, Alyssa M

Source: Epigenomics. 15(5):283-292

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188661745.0x000001&indx=1&recIds=ETOCvdc_100188661745.0x000001

Renin Production by Juxtaglomerular Cell Tumors and Clear Cell Renal Cell Carcinoma and the Role of Angiotensin Signaling Inhibitors

Authors: Gupta, Sounak, Nichols, Paige, Lohse, Christine M., Kosari, Farhad, Kattah, Andrea G., Harris, Faye R., Karagouga, Giannoula, Mehra, Rohit, Fine, Samson W., Reuter, Victor E., Herrera-Hernandez, Loren, Zganjar, Andrew J., Britton, Cameron J., Potretzke, Aaron M., Boorjian, Stephen A., Thompson, R. Houston, Jimenez, Rafael E., Leibovich, Bradley C., Garovic, Vesna D., Cheville, John C., Sharma, Vidit

Source: In Mayo Clinic Proceedings November 2022 97(11):2050-2064

Theragnostic chromosomal rearrangements in treatment‐naive pancreatic ductal adenocarcinomas obtained via endoscopic ultrasound

Authors: Murphy, Stephen J., Levy, Michael J., Smadbeck, James B., Karagouga, Giannoula, McCune, Alexa F., Harris, Faye R., Udell, Julia B., Johnson, Sarah H., Kerr, Sarah E., Cheville, John C., Kipp, Benjamin R., Vasmatzis, George, Gleeson, Ferga C.

Source: Journal of cellular and molecular medicine. 25(8):4110-4123

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100120122324.0x000001&indx=1&recIds=ETOCvdc_100120122324.0x000001

Optimizing clinical cytology touch preparations for next generation sequencing

Authors: Murphy, Stephen J., Harris, Faye R., Smadbeck, James B., Serla, Vishnu, Karagouga, Giannoula, Johnson, Sarah H., Kosari, Farhad, Pierson, Karlyn E., Bungum, Aaron O., Edell, Eric S., Mansfield, Aaron S., Wigle, Dennis A., Kipp, Benjamin R., Vasmatzis, George, Aubry, Marie Christine

Source: In Genomics November 2020 112(6):5313-5323

Integration of Comprehensive Genomic Analysis and Functional Screening of Affected Molecular Pathways to Inform Cancer Therapy

Authors: Vasmatzis, George, Liu, Minetta C., Reganti, Sowjanya, Feathers, Ryan W., Smadbeck, James, Johnson, Sarah H., Schaefer Klein, Janet L., Harris, Faye R., Yang, Lin, Kosari, Farhad, Murphy, Stephen J., Borad, Mitesh J., Thompson, E. Aubrey, Cheville, John C., Anastasiadis, Panos Z.

Source: In Mayo Clinic Proceedings February 2020 95(2):306-318

Using Genomics to Differentiate Multiple Primaries From Metastatic Lung Cancer

Authors: Murphy, Stephen J., Harris, Faye R., Kosari, Farhad, Barreto Siqueira Parrilha Terra, Simone, Nasir, Aqsa, Johnson, Sarah H., Serla, Vishnu, Smadbeck, James B., Halling, Geoffrey C., Karagouga, Giannoula, Sukov, William R., Leventakos, Konstantinos, Yang, Ping, Peikert, Tobias, Mansfield, Aaron S., Wigle, Dennis A., Yi, Eunhee S., Kipp, Benjamin R., Vasmatzis, George, Aubry, Marie-Christine

Source: In Journal of Thoracic Oncology September 2019 14(9):1567-1582

Mate‐pair sequencing identifies a cryptic BMPR2 mutation in hereditary pulmonary arterial hypertension

Authors: Chalmers, Sarah J., Murphy, Stephen J., Thompson, Laura L., Hoppman, Nicole L., Smadbeck, James B., Balcom, Jessica R., Harris, Faye R., Frantz, Robert P., Vasmatzis, George, E. Wylam, Mark

Source: Pulmonary circulation. 10(3):1-4

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138771852.0x000001&indx=1&recIds=ETOCvdc_100138771852.0x000001

Neoantigenic Potential of Complex Chromosomal Rearrangements in Mesothelioma

Authors: Mansfield, Aaron S., Peikert, Tobias, Smadbeck, James B., Udell, Julia B.M., Garcia-Rivera, Enrique, Elsbernd, Laura, Erskine, Courtney L., Van Keulen, Virginia P., Kosari, Farhad, Murphy, Stephen J., Ren, Hongzheng, Serla, Vishnu V., Schaefer Klein, Janet L., Karagouga, Giannoula, Harris, Faye R., Sosa, Carlos, Johnson, Sarah H., Nevala, Wendy, Markovic, Svetomir N., Bungum, Aaron O., Edell, Eric S., Dong, Haidong, Cheville, John C., Aubry, Marie Christine, Jen, Jin, Vasmatzis, George

Source: In Journal of Thoracic Oncology February 2019 14(2):276-287

Large Chromosomal Rearrangements Yield Biomarkers to Distinguish Low-Risk From Intermediate- and High-Risk Prostate Cancer

Authors: Vasmatzis, George, Kosari, Farhad, Murphy, Stephen J., Terra, Simone, Kovtun, Irina V., Harris, Faye R., Zarei, Shabnam, Smadbeck, James B., Johnson, Sarah H., Gaitatzes, Athanasios G., Therneau, Terry M., Rangel, Laureano J., Knudson, Ryan A., Greipp, Patricia, Sukov, William R., Knutson, Darlene L., Kloft-Nelson, Sara M., Karnes, R. Jeffrey, Cheville, John C.

Source: In Mayo Clinic Proceedings January 2019 94(1):27-36

SVAtools for junction detection of genome-wide chromosomal rearrangements by mate-pair sequencing (MPseq)

Authors: Johnson, Sarah H., Smadbeck, James B., Smoley, Stephanie A., Gaitatzes, Athanasios, Murphy, Stephen J., Harris, Faye R., Drucker, Travis M., Zenka, Roman M., Pitel, Beth A., Rowsey, Ross A., Hoppman, Nicole L., Aypar, Umut, Sukov, William R., Jenkins, Robert B., Feldman, Andrew L., Kearney, Hutton M. ^*, Vasmatzis, George ^*

Source: In Cancer Genetics February 2018 221:1-18

Genomic rearrangements in sporadic lymphangioleiomyomatosis: an evolving genetic story

Authors: Murphy, Stephen J, Terra, Simone B, Harris, Faye R, Nasir, Aqsa, Voss, Jesse S, Smadbeck, James B, Johnson, Sarah H, Serla, Vishnu, Ryu, Jay H, Yi, Eunhee S, Kipp, Benjamin R, Vasmatzis, George, Carmona, Eva M

Source: In Modern Pathology September 2017 30(9):1223-1233

Integrated analysis of the genomic instability of PTEN in clinically insignificant and significant prostate cancer

Authors: Murphy, Stephen J, Karnes, Robert J, Kosari, Farhad, Castellar, B Edgardo R Parilla, Kipp, Benjamin R, Johnson, Sarah H, Terra, Simone, Harris, Faye R, Halling, Geoffrey C, Klein, Janet L Schaefer, Nasir, Aqsa, Bergstrahl, Eric, Rangel, Laureano J, Sukov, William R, Vasmatzis, George, Cheville, John C

Source: In Modern Pathology February 2016 29(2):143-156

Chromosomal rearrangements and copy number abnormalities of TP63 correlate with p63 protein expression in lung adenocarcinoma

Authors: Aubry, Marie-Christine, Roden, Anja, Murphy, Stephen J, Vasmatzis, George, Johnson, Sarah H, Harris, Faye R, Halling, Geoffrey, Knudson, Ryan A, Ketterling, Rhett P, Feldman, Andrew L

Source: In Modern Pathology March 2015 28(3):359-366

Personalized tumor-specific DNA junctions to detect circulating tumor in patients with endometrial cancer.

Authors: Grassi, Tommaso^1,2 (AUTHOR), Harris, Faye R.³ (AUTHOR), Smadbeck, James B.³ (AUTHOR), Murphy, Stephen J.³ (AUTHOR), Block, Matthew S.⁴ (AUTHOR), Multinu, Francesco^1,5 (AUTHOR), Schaefer Klein, Janet L.³ (AUTHOR), Zhang, Piyan³ (AUTHOR), Karagouga, Giannoula³ (AUTHOR), Liu, Minetta C.⁴ (AUTHOR), Larish, Alyssa¹ (AUTHOR), Lemens, Maureen A.¹ (AUTHOR), Sommerfield, Marla Kay S.¹ (AUTHOR), Cappuccio, Serena^1,6 (AUTHOR), Cheville, John C.⁷ (AUTHOR), Vasmatzis, George³ (AUTHOR) Vasmatzis.george@mayo.edu, Mariani, Andrea¹ (AUTHOR)

Source: PLoS ONE. 6/10/2021, Vol. 16 Issue 6, p1-15. 15p.

Subject Terms: *CIRCULATING tumor DNA, *ENDOMETRIAL cancer, *ENDOMETRIAL tumors, *DNA, *CANCER patients, *CHROMOSOMAL rearrangement

Shared and unique genomic structural variants of different histological components within testicular germ cell tumours identified with mate pair sequencing

Authors: Bryce, Alan H., Egan, Jan B., Smadbeck, James B., Johnson, Sarah H., Murphy, Stephen J., Harris, Faye R., Halling, Geoffrey C., Terra, Simone B. S. P., Cheville, John, Pagliaro, Lance, Leibovich, Brad, Costello, Brian A., Vasmatzis, George

Source: Scientific reports. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131235297.0x000001&indx=1&recIds=ETOCvdc_100131235297.0x000001

Characterization of Genetic Findings Underlying Aggressive B-Cell Lymphomas with Atypical Results on MYC Break-Apart Fluorescence in Situ Hybridization (FISH) Analysis

Authors: Gagnon, Marie-France, Penheiter, Alan R ^*, Johnson, Sarah H ^*, Smadbeck, James B ^*, Sadeghian, Dorsay ^*, Harris, Faye R ^*, Karagouga, Giannoula ^*, McCune, Alexa ^*, Hoppman, Nicole L, Xu, Xinjie, Ketterling, Rhett P. ^*, Greipp, Patricia, Peterson, Jess F, Vasmatzis, George ^*, King, Rebecca L., Baughn, Linda B.

Source: In Blood 15 November 2022 140 Supplement 1:9272-9273

Suppression of Somatic Expansion Delays the Onset of Pathophysiology in a Mouse Model of Huntington’s Disease.

Authors: Budworth, Helen¹, Harris, Faye R.², Williams, Paul¹, Lee, Do Yup³, Holt, Amy¹, Pahnke, Jens^4,5, Szczesny, Bartosz⁶, Acevedo-Torres, Karina^7,8, Ayala-Peña, Sylvette^7,8, McMurray, Cynthia T.¹ ctmcmurray@lbl.gov

Source: PLoS Genetics. 8/6/2015, Vol. 11 Issue 8, p1-22. 22p.

Subject Terms: *HUNTINGTON disease, *ALLELES, *GENE expression, *PROTEIN expression, *DISEASE progression, *GENETICS

Targeting HER2 in patient‐derived xenograft ovarian cancer models sensitizes tumors to chemotherapy.

Authors: Harris, Faye R., Zhang, Piyan, Yang, Lin, Hou, Xiaonan, Leventakos, Konstantinos, Weroha, Saravut J., Vasmatzis, George, Kovtun, Irina V.

Source: Molecular Oncology; Feb2019, Vol. 13 Issue 2, p132-152, 21p

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