Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis.

Authors: Brunner, Andreas^1,2, Morero, Natalia Rosalía¹, Wanlu Zhang¹, Hossain, M. Julius³, Lampe, Marko⁴, Pflaumer, Hannah¹, Halavatyi, Aliaksandr⁴, Peters, Jan-Michael⁵, Beckwith, Kai S.^1,6, Ellenberg, Jan^1,7, jan.ellenberg@embl.de

Source: Journal of Cell Biology; 3/3/2025, Vol. 224 Issue 3, p1-S7, 32p

Dextromethorphan inhibits collagen and collagen-like cargo secretion to ameliorate lung fibrosis.

Authors: Khan, Muzamil M., Galea, George, Jung, Juan, Zukowska, Joanna, Lauer, David, Tuechler, Nadine, Halavatyi, Aliaksandr, Tischer, Christian, Haberkant, Per, Stein, Frank, Jung, Ferris, Landry, Jonathan J. M., Khan, Arif M., Oorschot, Viola, Becher, Isabelle, Neumann, Beate, Muley, Thomas, Winter, Hauke, Duerr, Julia, Mall, Marcus A

Source: Science Translational Medicine; 12/18/2024, Vol. 16 Issue 778, p1-15, 15p

Subject Terms: PULMONARY fibrosis, ANTITUSSIVE agents, INTERSTITIAL lung diseases, EXTRACELLULAR matrix, ENDOPLASMIC reticulum

A solid‐phase transfection platform for arrayed CRISPR screens

Authors: Serçin, Özdemirhan, Reither, Sabine, Roidos, Paris, Ballin, Nadja, Palikyras, Spyridon, Baginska, Anna, Rein, Katrin, Llamazares, Maria, Halavatyi, Aliaksandr, Winter, Hauke, Muley, Thomas, Jurkowska, Renata Z, Abdollahi, Amir, Zenke, Frank T, Neumann, Beate, Mardin, Balca R

Source: Molecular systems biology. 16(6)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100111123015.0x000001&indx=1&recIds=ETOCvdc_100111123015.0x000001

Targeted volume correlative light and electron microscopy of an environmental marine microorganism.

Authors: Mocaer, Karel, Mizzon, Giulia, Gunkel, Manuel, Halavatyi, Aliaksandr, Steyer, Anna, Oorschot, Viola, Schorb, Martin, Le Kieffre, Charlotte, Yee, Daniel P., Chevalier, Fabien, Gallet, Benoit, Decelle, Johan, Schwab, Yannick, Ronchi, Paolo

Source: Journal of Cell Science; Aug2023, Vol. 136 Issue 15, p1-12, 12p

Subject Terms: ELECTRON microscopy, MARINE microorganisms, MICROSCOPY, BIOTIC communities, ENVIRONMENTAL sampling

A solid‐phase transfection platform for arrayed CRISPR screens

Authors: Serçin, Özdemirhan, Reither, Sabine, Roidos, Paris, Ballin, Nadja, Palikyras, Spyridon, Baginska, Anna, Rein, Katrin, Llamazares, Maria, Halavatyi, Aliaksandr, Winter, Hauke, Muley, Thomas, Jurkowska, Renata Z, Abdollahi, Amir, Zenke, Frank T, Neumann, Beate, Mardin, Balca R

Source: Molecular systems biology. 15(12)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100095113921.0x000001&indx=1&recIds=ETOCvdc_100095113921.0x000001

Regulation of the COPII secretory machinery via focal adhesions and extracellular matrix signaling

Authors: Jung, Juan, Khan, Muzamil Majid, Landry, Jonathan, Halavatyi, Aliaksandr, Machado, Pedro, Reiss, Miriam, Pepperkok, Rainer

Source: Journal of cell biology. 221(8):e202110081-e202110081

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN629854214&indx=1&recIds=ETOCRN629854214

An integrative simulation model linking major biochemical reactions of actin-polymerization to structural properties of actin filaments

Authors: Halavatyi, Aliaksandr A., Nazarov, Petr V., Medves, Sandrine, van Troys, Marleen, Ampe, Christophe, Yatskou, Mikalai, Friederich, Evelyne

Source: In Biophysical Chemistry 2009 140(1):24-34

RNA polymerase II depletion from the inactive X chromosome territory is not mediated by physical compartmentalization

Authors: Collombet, Samuel, Rall, Isabell, Dugast-Darzacq, Claire, Heckert, Alec, Halavatyi, Aliaksandr, Le Saux, Agnes, Dailey, Gina, Darzacq, Xavier, Heard, Edith

Source: Nature Structural and Molecular Biology; 20230101, Issue: Preprints p1-8, 8p

Strength of interactions in the Notch gene regulatory network determines patterning and fate in the notochord.

Authors: Sánchez-Iranzo, Héctor¹ hector.sanchez@kit.edu, Halavatyi, Aliaksandr², Diz-Muñoz, Alba¹ diz@embl.de

Source: eLife. 6/6/2022, p1-28. 28p.

Subject Terms: *NOTOCHORD, *GENE regulatory networks, *CELL aggregation, *MULTICELLULAR organisms, *GENE expression, *SOCIAL interaction

Pairwise effects between lipid GWAS genes modulate lipid plasma levels and cellular uptake.

Authors: Zimoń, Magdalena, Huang, Yunfeng, Trasta, Anthi, Halavatyi, Aliaksandr, Liu, Jimmy Z., Chen, Chia-Yen, Blattmann, Peter, Klaus, Bernd, Whelan, Christopher D., Sexton, David, John, Sally, Huber, Wolfgang, Tsai, Ellen A., Pepperkok, Rainer, Runz, Heiko

Source: Nature Communications; 11/5/2021, Vol. 12 Issue 1, p1-16, 16p

Subject Terms: BLOOD lipids, GENOME-wide association studies, GENETIC variation, GENETIC testing, HUMAN genetics, LIPIDS, GENE delivery techniques, PHENOTYPES

An open-source semi-automated robotics pipeline for embryo immunohistochemistry.

Authors: Fuqua, Timothy, Jordan, Jeff, Halavatyi, Aliaksandr, Tischer, Christian, Richter, Kerstin, Crocker, Justin

Source: Scientific Reports; 5/13/2021, Vol. 11 Issue 1, p1-16, 16p

Subject Terms: IMMUNOHISTOCHEMISTRY, SYSTEMS biology, MUTAGENESIS, EMBRYOS, CONFOCAL microscopy

Dense and pleiotropic regulatory information in a developmental enhancer.

Authors: Fuqua, Timothy, Jordan, Jeff, van Breugel, Maria Elize, Halavatyi, Aliaksandr, Tischer, Christian, Polidoro, Peter, Abe, Namiko, Tsai, Albert, Mann, Richard S., Stern, David L., Crocker, Justin

Source: Nature; 11/12/2020, Vol. 587 Issue 7833, p235-239, 5p

A mathematical model of actin filament turnover for fitting FRAP data.

Authors: Halavatyi, Aliaksandr A.¹, Nazarov, Petr V.², Tanoury, Ziad Al¹, Apanasovich, Vladimir V.³, Yatskou, Mikalai¹, Friederich, Evelyne¹ evelyne.friederich@uni.lu

Source: European Biophysics Journal. Mar2010, Vol. 39 Issue 4, p669-677. 9p. 2 Graphs.

Subject Terms: *ACTIN, *MATHEMATICAL models, *POLYMERIZATION, *FLUORESCENCE, *STOCHASTIC differential equations, *ALGORITHMS

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

A microtubule-independent role of p150^glued in secretory cargo concentration at endoplasmic reticulum exit sites.

Authors: Verissimo, Fatima, Halavatyi, Aliaksandr, Pepperkok, Rainer, Weiss, Matthias

Source: Journal of Cell Science; Nov2015, Vol. 128 Issue 22, p4160-4170, 11p, 2 Charts

Subject Terms: ADAPTOR proteins, CARRIER proteins, MICROTUBULE-associated proteins, PROTEIN synthesis, ENDOPLASMIC reticulum

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

Quantitative Kinetic Study of the Actin-Bundling Protein L-Plastin and of Its Impact on Actin Turn-Over.

Authors: Tanoury, Ziad Al, Schaffner-Reckinger, Elisabeth, Halavatyi, Aliaksandr, Hoffmann, Cé line, Moes, Michèle, Hadzic, Ermin, Catillon, Marie, Yatskou, Mikalai, Friederich, Evelyne

Source: PLoS ONE; 2010, Vol. 5 Issue 2, p1-13, 13p, 3 Color Photographs, 2 Graphs

Subject Terms: LEUKOCYTES, CANCER cells, ACTIN, ACTOMYOSIN, PHOSPHORYLATION, FLUORESCENCE, CELL adhesion, POLYMERIZATION, CHEMICAL reactions

Nuclear pores dilate and constrict in cellulo.

Authors: Zimmerli, Christian E., Allegretti, Matteo, Rantos, Vasileios, Goetz, Sara K., Obarska-Kosinska, Agnieszka, Zagoriy, Ievgeniia, Halavatyi, Aliaksandr, Hummer, Gerhard, Mahamid, Julia, Kosinski, Jan, jan.kosinski@embl.de, Beck, Martin, martin.beck@biophys.mpg.de

Source: Science; 12/10/2021, Vol. 374 Issue 6573, p1341-1341, 1p, 1 Color Photograph