RETRACTED ARTICLE: RNA editing of BFP, a point mutant of GFP, using artificial APOBEC1 deaminase to restore the genetic code.

Authors: Bhakta, Sonali¹ (AUTHOR), Sakari, Matomo¹ (AUTHOR), Tsukahara, Toshifumi¹ (AUTHOR) tukahara@jaist.ac.jp

Source: Scientific Reports. 2/14/2025, Vol. 15 Issue 1, p1-13. 13p.

Subject Terms: *HAIRPIN (Genetics), *LIFE sciences, *CYTOLOGY, *RNA editing, *SYNTHETIC enzymes

Iron-mediated post-transcriptional regulation in Toxoplasma gondii.

Authors: Sloan, Megan A.¹ (AUTHOR) megan.sloan@glasgow.ac.uk, Scott, Adam¹ (AUTHOR), Aghabi, Dana¹ (AUTHOR), Mrvova, Lucia¹ (AUTHOR), Harding, Clare R.¹ (AUTHOR) clare.harding@glasgow.ac.uk

Source: PLoS Pathogens. 2/3/2025, Vol. 21 Issue 1, p1-32. 32p.

Subject Terms: *MESSENGER RNA, *HAIRPIN (Genetics), *GENE expression, *IRON, *CELL lines

A Dual-Cycle Isothermal Amplification Method for microRNA Detection: Combination of a Duplex-Specific Nuclease Enzyme-Driven DNA Walker with Improved Catalytic Hairpin Assembly.

Authors: Han, Yu¹ (AUTHOR) hanyu.jlmu@vip.163.com, Han, Shuang¹ (AUTHOR), Ren, Ting¹ (AUTHOR), Han, Liu¹ (AUTHOR), Ma, Xiangyu¹ (AUTHOR), Huang, Lijing¹ (AUTHOR), Sun, Xin¹ (AUTHOR) hanyu.jlmu@vip.163.com

Source: International Journal of Molecular Sciences. Jan2025, Vol. 26 Issue 2, p689. 12p.

Subject Terms: *GENE expression, *HAIRPIN (Genetics), *DNA probes, *DEOXYRIBOZYMES, *GENETIC transcription

Binding-driven forward tearing protospacer activated CRISPR-Cas12a system and applications for microRNA detection.

Authors: Zhao, Lina¹ (AUTHOR), Deng, Xiangyu² (AUTHOR), Li, Yuqing¹ (AUTHOR), Zhao, Qing¹ (AUTHOR), Xiao, Lizhu¹ (AUTHOR), Xue, Jianjiang² (AUTHOR), Chen, Anyi³ (AUTHOR) chenay@cqmu.edu.cn, Cheng, Wei⁴ (AUTHOR), Zhao, Min¹ (AUTHOR) zhaomin@cqmu.edu.cn

Source: Journal of Nanobiotechnology. 11/8/2024, Vol. 22 Issue 1, p1-14. 14p.

Subject Terms: *HAIRPIN (Genetics), *NUCLEIC acids, *CRISPRS, *MOLECULAR diagnosis, *DNA

Chain extension-mediated colorimetric and sensitive detection of osteosarcoma-related miRNA based on CHA-cooperated self-priming.

Authors: Liu, Wen¹ (AUTHOR), Yang, Yunfei¹ (AUTHOR), Xiao, Gongyi¹ (AUTHOR), Tang, Chun¹ (AUTHOR), Deng, Zhongliang¹ (AUTHOR) zhongliang_deng@sina.com

Source: Journal of Analytical Science & Technology. 11/7/2024, Vol. 15 Issue 1, p1-7. 7p.

Subject Terms: *HAIRPIN (Genetics), *DNA polymerases, *MICRORNA, *QUALITY of life, *OSTEOSARCOMA

Catalytic hairpin assembly-triggered endonuclease-mediated cascade signal recycling for sensitive and colorimetric miRNA detection.

Authors: Xiong, Xinkui¹ (AUTHOR), Chen, Chen¹ (AUTHOR), Zang, Bao¹ (AUTHOR) zangbaofqin@sina.com

Source: Journal of Analytical Science & Technology. 11/5/2024, Vol. 15 Issue 1, p1-8. 8p.

Subject Terms: *HAIRPIN (Genetics), *HORSERADISH peroxidase, *ESOPHAGEAL cancer, *MICRORNA, *CANCER diagnosis

Lateral Flow Assay for Preeclampsia Screening Using DNA Hairpins and Surface-Enhanced Raman-Active Nanoprobes Targeting hsa-miR-17-5p.

Authors: Ng, Ka Wai¹, ngkerry1997@tamu.edu, Jaitpal, Siddhant¹, sjaitpal@tamu.edu, Vu, Ngoc Nhu¹, nvu1@exchange.tamu.edu, San Juan, Angela Michelle T.¹, angelasanjuan08@tamu.edu, Tripathy, Sayantan¹, tripathysayantan@gmail.com, Kodam, Rohit Sai¹, rohitsaikodam@tamu.edu, Bastiray, Abhishek², bastiray@exchange.tamu.edu, Cho, Jae-Hyun², jaehyun.cho@ag.tamu.edu, Choudhury, Mahua³, mchoudhury@tamu.edu, Coté, Gerard L.^1,4,5, gcote@tamu.edu, Mabbott, Samuel^1,4, smabbott@tamu.edu

Source: Biosensors (2079-6374); Nov2024, Vol. 14 Issue 11, p535, 15p

Translation regulation by RNA stem-loops can reduce gene expression noise.

Authors: Çelik, Candan^1,2 (AUTHOR) candanc@aydin.edu.tr, Bokes, Pavol^1,3 (AUTHOR), Singh, Abhyudai⁴ (AUTHOR)

Source: BMC Bioinformatics. 10/22/2024, Vol. 25 Issue 1, p1-22. 22p.

Subject Terms: *HAIRPIN (Genetics), *GENETIC translation, *GENE expression, *STOCHASTIC models, *PROTEIN expression

Kinetic Studies on the Interaction of HIV-1 Gag Protein with the HIV-1 RNA Packaging Signal.

Authors: Rink, Constance¹ (AUTHOR) connie.rink@nih.gov, Kroupa, Tomas¹ (AUTHOR), Datta, Siddhartha A. K.¹ (AUTHOR), Rein, Alan¹ (AUTHOR) reina@mail.nih.gov

Source: Viruses (1999-4915). Oct2024, Vol. 16 Issue 10, p1517. 10p.

Subject Terms: *GAG proteins, *HAIRPIN (Genetics), *VIRAL proteins, *BINDING sites, *HIV, *GLYCOSAMINOGLYCANS

Structural and Dynamical Properties of Nucleic Acid Hairpins Implicated in Trinucleotide Repeat Expansion Diseases.

Authors: Pan, Feng^1,2 (AUTHOR) fpan3.ncsu@gmail.com, Xu, Pengning^1,3 (AUTHOR) cmroland@ncsu.edu, Roland, Christopher¹ (AUTHOR), Sagui, Celeste¹ (AUTHOR), Weninger, Keith¹ (AUTHOR) krwening@ncsu.edu

Source: Biomolecules (2218-273X). Oct2024, Vol. 14 Issue 10, p1278. 25p.

Subject Terms: *TRINUCLEOTIDE repeats, *HAIRPIN (Genetics), *MOLECULAR structure, *MOLECULAR dynamics, *HAIRPINS

Chaperone Copolymer-Assisted Catalytic Hairpin Assembly for Highly Sensitive Detection of Adenosine.

Authors: Liao, Yazhen¹ (AUTHOR), Yin, Xiaoxue¹ (AUTHOR), Liu, Wenqian¹ (AUTHOR) 21220856000036@hainanu.edu.cn, Du, Zhenrui¹ (AUTHOR), Du, Jie¹ (AUTHOR) dujie@hainanu.edu.cn

Source: Polymers (20734360). Aug2024, Vol. 16 Issue 15, p2179. 13p.

Subject Terms: *HAIRPIN (Genetics), *NUCLEIC acids, *EXCHANGE reactions, *SIGNAL detection, *DETECTION limit

Synthesis and properties of RNA constrained by a 2'‐O‐disulfide bridge.

Authors: Traoré, Diallo¹ (AUTHOR), Biecher, Elisa¹ (AUTHOR), Mallet, Manon¹ (AUTHOR), Rouanet, Sonia¹ (AUTHOR), Vasseur, Jean‐Jacques¹ (AUTHOR), Smietana, Michael¹ (AUTHOR), Dupouy, Christelle¹ (AUTHOR) christelle.dupouy@umontpellier.fr

Source: ChemistryOpen. Aug2024, Vol. 13 Issue 8, p1-7. 7p.

Subject Terms: *HAIRPIN (Genetics), *NUCLEIC acids, *RNA synthesis, *PHOSPHORAMIDITES, *URIDINE

Mutations in the Receptor Binding Domain of Severe Acute Respiratory Coronavirus-2 Omicron Variant Spike Protein Significantly Stabilizes Its Conformation.

Authors: Peters, Michael H.¹ (AUTHOR) mpeters@vcu.edu

Source: Viruses (1999-4915). Jun2024, Vol. 16 Issue 6, p912. 12p.

Subject Terms: *SARS-CoV-2 Omicron variant, *HAIRPIN (Genetics), *SARS-CoV-2, *BOUND states, *HYDROGEN bonding

Catalytic Hairpin Assembly-Based Self-Ratiometric Gel Electrophoresis Detection Platform for Reliable Nucleic Acid Analysis.

Authors: Xi, Qiang¹, xiqiang@hnu.edu.cn, Wang, Si-Yi¹, wangsiyi0066@163.com, Deng, Xiao-Bing¹, xdyyyjk@163.com, Zhang, Chong-Hua², xdyyyjk@163.com

Source: Biosensors (2079-6374); May2024, Vol. 14 Issue 5, p232, 10p

Plasmon–emitter coupling in cytosine-rich hairpin DNA-templated silver nanoclusters: Thermal reversibility, white light emission, and dynamics inside live cells.

Authors: Chakraborty, Subhajit¹ (AUTHOR), Pramanik, Srikrishna¹ (AUTHOR), Shekhar, Shashi¹ (AUTHOR), Mukherjee, Saptarshi¹ (AUTHOR) saptarshi@iiserb.ac.in

Source: Journal of Chemical Physics. 4/21/2024, Vol. 160 Issue 15, p1-11. 11p.

Subject Terms: *HAIRPIN (Genetics), *BIOCHEMISTRY, *FLUORESCENCE yield, *BIOLOGICAL systems, *LUMINESCENT probes, *PHOTOLUMINESCENT polymers

Utility of oligonucleotide in upregulating circular RNA production in a cellular model.

Authors: Ni, Lu¹ (AUTHOR), Yamada, Takeshi¹ (AUTHOR), Nakatani, Kazuhiko¹ (AUTHOR) nakatani@sanken.osaka-u.ac.jp

Source: Scientific Reports. 4/6/2024, Vol. 14 Issue 1, p1-10. 10p.

Subject Terms: *CIRCULAR RNA, *HAIRPIN (Genetics), *HELA cells, *SPLICEOSOMES, *CELL physiology, *INTRONS

Development of a transgenic rice line with strong and broad resistance against four devastating rice viruses through expressing a single hairpin RNA construct.

Authors: Li, Chenyang^1,2 (AUTHOR), Wu, Jianxiang¹ (AUTHOR), Fu, Shuai¹ (AUTHOR), Xu, Yi¹ (AUTHOR), Wang, Yaqin¹ (AUTHOR), Yang, Xiuling³ (AUTHOR), Lan, Ying² (AUTHOR), Lin, Feng² (AUTHOR), Du, Linlin² (AUTHOR), Zhou, Tong² (AUTHOR) zhoutong@jaas.ac.cn, Zhou, Xueping^1,3 (AUTHOR) zzhou@zju.edu.cn

Source: Plant Biotechnology Journal. Aug2024, Vol. 22 Issue 8, p2142-2144. 3p.

Subject Terms: *HAIRPIN (Genetics), *TRANSGENIC rice, *HYBRID rice, *RICE, *RNA, *LAODELPHAX striatellus

DNA-based assay for calorimetric determination of protein concentrations in pure or mixed solutions.

Authors: Eskew, Matthew W.^1,2 (AUTHOR) meskew@thermocaplabs.com, Reardon, Patrick³ (AUTHOR), Benight, Albert S.^1,2,4 (AUTHOR)

Source: PLoS ONE. 3/1/2024, Vol. 19 Issue 2, p1-20. 20p.

Subject Terms: *GLOBULAR proteins, *HAIRPIN (Genetics), *DIFFERENTIAL scanning calorimetry, *NUCLEOTIDE sequence, *PROTEINS, *PROTEIN stability

Successful CRISPR/Cas9-mediated HDR at individual DNA breakpoints using TFO-based targeted template design.

Authors: Ebrahimi, Zahra¹, Kazemi, Bahram^1,2, Salehi, Mohammad^1,2, Jajarmi, Vahid^1,2 v.jajarmi@gmail.com

Source: Electronic Journal of Biotechnology. Mar2024, Vol. 68, p41-46. 6p.

Subject Terms: *DESIGN templates, *HAIRPIN (Genetics), *COMPLEMENTARY DNA, *DNA, *DNA insertion elements, *DNA repair, *CRISPRS

Discovery, classification and application of the CPISPR-Cas13 system.

Authors: Nie, Xiaojuan¹ (AUTHOR), Wang, Dandan² (AUTHOR), Pan, Ye³ (AUTHOR), Hua, Ye⁴ (AUTHOR), Lü, Peng² (AUTHOR), Yang, Yanhua² (AUTHOR) yanhuayang@126.com

Source: Technology & Health Care. 2024, Vol. 32 Issue 2, p525-544. 20p.

Subject Terms: *CRISPRS, *HAIRPIN (Genetics), *GENOME editing, *PROKARYOTES, *VETERINARY therapeutics, *GENETIC regulation