KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences.

Authors: Iouranova, Alexandra¹ (AUTHOR), Grun, Delphine¹ (AUTHOR), Rossy, Tamara¹ (AUTHOR), Duc, Julien¹ (AUTHOR), Coudray, Alexandre¹ (AUTHOR), Imbeault, Michael^1,2 (AUTHOR), de Tribolet-Hardy, Jonas¹ (AUTHOR), Turelli, Priscilla¹ (AUTHOR), Persat, Alexandre¹ (AUTHOR), Trono, Didier¹ (AUTHOR) didier.trono@epfl.ch

Source: Mobile DNA. Dec2022, Vol. 13 Issue 1, p1-17. 17p.

Subject Terms: *ZINC-finger proteins, *HEREDITY, *GENETIC regulation, *ENDOGENOUS retroviruses, *GERM cells, *GENE expression

Statistical learning quantifies transposable element-mediated cis-regulation.

Authors: Pulver, Cyril, Grun, Delphine, Duc, Julien, Sheppard, Shaoline, Planet, Evarist, Coudray, Alexandre, de Fondeville, Raphaël, Pontis, Julien, Trono, Didier

Source: Genome Biology; 11/10/2023, Vol. 24 Issue 1, p1-40, 40p

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

Authors: Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J., Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164257967.0x000001&indx=1&recIds=ETOCvdc_100164257967.0x000001

Primate-specific transposable elements shape transcriptional networks during human development.

Authors: Pontis, Julien, Pulver, Cyril, Playfoot, Christopher J., Planet, Evarist, Grun, Delphine, Offner, Sandra, Duc, Julien, Manfrin, Andrea, Lutolf, Matthias P., Trono, Didier

Source: Nature Communications; 11/23/2022, Vol. 13 Issue 1, p1-13, 13p

Subject Terms: GENE regulatory networks, GASTRULATION, INTERNAL waves, EMBRYOLOGY, HUMAN genome, BINDING sites

DUX is a non-essential synchronizer of zygotic genome activation.

Authors: De Iaco, Alberto, Verp, Sonia, Offner, Sandra, Grun, Delphine, Trono, Didier

Source: Development (09501991); Feb2020, Vol. 147 Issue 2, p1-6, 6p

Subject Terms: HOMEOBOX proteins, GENOME editing, EMBRYOLOGY, EMBRYOS, CELL division

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Clusters of lineage-specific genes are anchored by ZNF274 in repressive perinucleolar compartments.

Authors: Begnis, Martina¹ martina.begnis@epfl.ch, Duc, Julien¹, Offner, Sandra¹, Grun, Delphine¹, Sheppard, Shaoline¹, Rosspopoff, Olga¹, Trono, Didier¹ didier.trono@epfl.ch

Source: Science Advances. 9/13/2024, Vol. 10 Issue 37, p1-14. 14p.

Subject Terms: *ORGANELLE formation, *GENE clusters, *CELL differentiation, *NUCLEOLUS, *CADHERINS, *ZINC-finger proteins