System- and Sample-agnostic Isotropic 3D Microscopy by Weakly Physics-informed, Domain-shift-resistant Axial Deblurring

Authors: Han, Jiashu, Liu, Kunzan, Isaacson, Keith B., Monakhova, Kristina, Griffith, Linda G., You, Sixian

Subject Terms: Physics - Optics, Electrical Engineering and Systems Science - Image and Video Processing, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2406.06337

Deep and Dynamic Metabolic and Structural Imaging in Living Tissues

Authors: Liu, Kunzan, Cao, Honghao, Shashaty, Kasey, Yu, Li-Yu, Spitz, Sarah, Pramotton, Francesca Michela, Wan, Zhengpeng, Kan, Ellen L., Tevonian, Erin N., Levy, Manuel, Lendaro, Eva, Kamm, Roger D., Griffith, Linda G., Wang, Fan, Qiu, Tong, You, Sixian

Subject Terms: Physics - Optics, Physics - Biological Physics

Access URL: http://arxiv.org/abs/2404.11901

Learned, uncertainty-driven adaptive acquisition for photon-efficient scanning microscopy

Authors: Ye, Cassandra Tong, Han, Jiashu, Liu, Kunzan, Angelopoulos, Anastasios, Griffith, Linda, Monakhova, Kristina, You, Sixian

Source: Optics Express Vol. 33, Issue 6, 2025

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Physics - Optics

Access URL: http://arxiv.org/abs/2310.16102

A Call for New Theories on the Pathogenesis and Pathophysiology of Endometriosis

Authors: Canis, Michel, Abbott, Jason, Abrao, Mauricio, Al-Jefout, Moamar, Bedaiwy, Mohamed, Benagiano, Giuseppe, Burns, Katherine A., Carmona, Francisco, Chapron, Charles, Critchley, Hilary O.D., de Ziegler, Dominique, Falcone, Tommaso, Fazleabas, Asgerally, Ferrero, Simone, Garcia-Velasco, Juan A., Gargett, Caroline, Greaves, Erin, Griffith, Linda G., Guo, Sun-Wei, Habiba, Marwan, Harada, Tasuku, Hull, Mary Louise, Johnson, Neil P., Kaufman, Yuval, Issacson, Keith B, Khan, Khaleque N., Kim, Mee-Ran, Koninckx, Philippe A., Lessey, Bruce A., Martin, Dan, Matsuzaki, Sachiko, Mishra, Gita, Osuga, Yutaka, Petraglia, Felice, Popov, Alexander, Roman, Horace, Romano, Andrea, Saunders, Philippa, Seckin, Tamer, Somigliana, Edgardo, Taylor, Hugh S., Taylor, Robert N., Vercellini, Paolo, Vigano, Paola

Source: In The Journal of Minimally Invasive Gynecology May 2024 31(5):371-377

Allogeneic hematopoietic cell transplantation is effective for p47phox chronic granulomatous disease: A Primary Immune Deficiency Treatment Consortium study

Authors: Grunebaum, Eyal, Arnold, Danielle E., Logan, Brent, Parikh, Suhag, Marsh, Rebecca A., Griffith, Linda M., Mallhi, Kanwaldeep, Chellapandian, Deepak, Lim, Stephanie Si, Deal, Christin L., Kapoor, Neena, Murguía-Favela, Luis, Falcone, Emilia Liana, Prasad, Vinod K., Touzot, Fabien, Bleesing, Jack J., Chandrakasan, Shanmuganathan, Heimall, Jennifer R., Bednarski, Jeffrey J., Broglie, Larisa A., Chong, Hey Jin, Kapadia, Malika, Prockop, Susan, Dávila Saldaña, Blachy J., Schaefer, Edo, Bauchat, Andrea L., Teira, Pierre, Chandra, Sharat, Parta, Mark, Cowan, Morton J., Dvorak, Christopher C., Haddad, Elie, Kohn, Donald B., Notarangelo, Luigi D., Pai, Sung-Yun, Puck, Jennifer M., Pulsipher, Michael A., Torgerson, Troy R., Malech, Harry L., Kang, Elizabeth M., Leiding, Jennifer W.

Source: In The Journal of Allergy and Clinical Immunology May 2024 153(5):1423-1431

Relevance of lymphocyte proliferation to PHA in severe combined immunodeficiency (SCID) and T cell lymphopenia

Authors: Abraham, Roshini S., Basu, Amrita, Heimall, Jennifer R., Dunn, Elizabeth, Yip, Alison, Kapadia, Malika, Kapoor, Neena, Satter, Lisa Forbes, Buckley, Rebecca, O'Reilly, Richard, Cuvelier, Geoffrey D.E., Chandra, Sharat, Bednarski, Jeffrey, Chaudhury, Sonali, Moore, Theodore B., Haines, Hilary, Dávila Saldaña, Blachy J., Chellapandian, Deepakbabu, Rayes, Ahmad, Chen, Karin, Caywood, Emi, Chandrakasan, Shanmuganathan, Lugt, Mark Thomas Vander, Ebens, Christen, Teira, Pierre, Shereck, Evan, Miller, Holly, Aquino, Victor, Eissa, Hesham, Yu, Lolie C., Gillio, Alfred, Madden, Lisa, Knutsen, Alan, Shah, Ami J., DeSantes, Kenneth, Barnum, Jessie, Broglie, Larisa, Joshi, Avni Y., Kleiner, Gary, Dara, Jasmeen, Prockop, Susan, Martinez, Caridad, Mousallem, Talal, Oved, Joseph, Burroughs, Lauri, Marsh, Rebecca, Torgerson, Troy R., Leiding, Jennifer W., Pai, Sung Yun, Kohn, Donald B., Pulsipher, Michael A., Griffith, Linda M., Notarangelo, Luigi D., Cowan, Morton J., Puck, Jennifer, Dvorak, Christopher C., Haddad, Elie

Source: In Clinical Immunology April 2024 261

Posttransplantation late complications increase over time for patients with SCID: A Primary Immune Deficiency Treatment Consortium (PIDTC) landmark study

Authors: Eissa, Hesham, Thakar, Monica S., Shah, Ami J., Logan, Brent R., Griffith, Linda M., Dong, Huaying, Parrott, Roberta E., O’Reilly, Richard J., Dara, Jasmeen, Kapoor, Neena, Forbes Satter, Lisa, Chandra, Sharat, Kapadia, Malika, Chandrakasan, Shanmuganathan, Knutsen, Alan, Jyonouchi, Soma C., Molinari, Lyndsay, Rayes, Ahmad, Ebens, Christen L., Teira, Pierre, Dávila Saldaña, Blachy J., Burroughs, Lauri M., Chaudhury, Sonali, Chellapandian, Deepak, Gillio, Alfred P., Goldman, Fredrick, Malech, Harry L., DeSantes, Kenneth, Cuvelier, Geoff D.E., Rozmus, Jacob, Quinones, Ralph, Yu, Lolie C., Broglie, Larisa, Aquino, Victor, Shereck, Evan, Moore, Theodore B., Vander Lugt, Mark T., Mousallem, Talal I., Oved, Joeseph H., Dorsey, Morna, Abdel-Azim, Hisham, Martinez, Caridad, Bleesing, Jacob H., Prockop, Susan, Kohn, Donald B., Bednarski, Jeffrey J., Leiding, Jennifer, Marsh, Rebecca A., Torgerson, Troy, Notarangelo, Luigi D., Pai, Sung-Yun, Pulsipher, Michael A., Puck, Jennifer M., Dvorak, Christopher C., Haddad, Elie, Buckley, Rebecca H., Cowan, Morton J., Heimall, Jennifer

Source: In The Journal of Allergy and Clinical Immunology January 2024 153(1):287-296

Genotype, oxidase status, and preceding infection or autoinflammation do not affect allogeneic HCT outcomes for CGD

Authors: Leiding, Jennifer W., Arnold, Danielle E., Parikh, Suhag, Logan, Brent, Marsh, Rebecca A., Griffith, Linda M., Wu, Ruizhe, Kidd, Sharon, Mallhi, Kanwaldeep, Chellapandian, Deepak, Si Lim, Stephanie J., Grunebaum, Eyal, Falcone, E. Liana, Murguia-Favela, Luis, Grossman, Debbi, Prasad, Vinod K., Heimall, Jennifer R., Touzot, Fabien, Burroughs, Lauri M., Bleesing, Jack, Kapoor, Neena, Dara, Jasmeen, Williams, Olatundun, Kapadia, Malika, Oshrine, Benjamin R., Bednarski, Jeffrey J., Rayes, Ahmad, Chong, Hey, Cuvelier, Geoffrey D. E., Forbes Satter, Lisa R., Martinez, Caridad, Vander Lugt, Mark T., Yu, Lolie C., Chandrakasan, Shanmuganathan, Joshi, Avni, Prockop, Susan E., Dávila Saldaña, Blachy J., Aquino, Victor, Broglie, Larisa A., Ebens, Christen L., Madden, Lisa M., DeSantes, Kenneth, Milner, Jordan, Rangarajan, Hemalatha G., Shah, Ami J., Gillio, Alfred P., Knutsen, Alan P., Miller, Holly K., Moore, Theodore B., Graham, Pamela, Bauchat, Andrea, Bunin, Nancy J., Teira, Pierre, Petrovic, Aleksandra, Chandra, Sharat, Abdel-Azim, Hisham, Dorsey, Morna J., Birbrayer, Olga, Cowan, Morton J., Dvorak, Christopher C., Haddad, Elie, Kohn, Donald B., Notarangelo, Luigi D., Pai, Sung-Yun, Puck, Jennifer M., Pulsipher, Michael A., Torgerson, Troy R., Malech, Harry L., Kang, Elizabeth M.

Source: In Blood 14 December 2023 142(24):2105-2118

Intestinal microbiome and metabolome signatures in patients with chronic granulomatous disease

Authors: Chandrasekaran, Prabha, Han, Yu, Zerbe, Christa S., Heller, Theo, DeRavin, Suk See, Kreuzberg, Samantha A., Marciano, Beatriz E., Siu, Yik, Jones, Drew R., Abraham, Roshini S., Stephens, Michael C., Tsou, Amy M., Snapper, Scott, Conlan, Sean, Subramanian, Poorani, Quinones, Mariam, Grou, Caroline, Calderon, Virginie, Deming, Clayton, Leiding, Jennifer W., Arnold, Danielle E., Logan, Brent R., Griffith, Linda M., Petrovic, Aleksandra, Mousallem, Talal I., Kapoor, Neena, Heimall, Jennifer R., Barnum, Jessie L., Kapadia, Malika, Wright, Nicola, Rayes, Ahmad, Chandra, Sharat, Broglie, Larisa A., Chellapandian, Deepak, Deal, Christin L., Grunebaum, Eyal, Lim, Stephanie Si, Mallhi, Kanwaldeep, Marsh, Rebecca A., Murguia-Favela, Luis, Parikh, Suhag, Touzot, Fabien, Cowan, Morton J., Dvorak, Christopher C., Haddad, Elie, Kohn, Donald B., Notarangelo, Luigi D., Pai, Sung-Yun, Puck, Jennifer M., Pulsipher, Michael A., Torgerson, Troy R., Kang, Elizabeth M., Malech, Harry L., Segre, Julia A., Bryant, Clare E., Holland, Steven M., Falcone, Emilia Liana

Source: In The Journal of Allergy and Clinical Immunology December 2023 152(6):1619-1633

Organoid co-culture model of the human endometrium in a fully synthetic extracellular matrix enables the study of epithelial-stromal crosstalk

Authors: Gnecco, Juan S., Brown, Alexander, Buttrey, Kira, Ives, Clara, Goods, Brittany A., Baugh, Lauren, Hernandez-Gordillo, Victor, Loring, Megan, Isaacson, Keith B., Griffith, Linda G.

Source: In Med 11 August 2023 4(8):554-579

Measuring the effect of newborn screening on survival after haematopoietic cell transplantation for severe combined immunodeficiency: a 36-year longitudinal study from the Primary Immune Deficiency Treatment Consortium

Authors: Thakar, Monica S ^*, Logan, Brent R, Puck, Jennifer M, Dunn, Elizabeth A, Buckley, Rebecca H, Cowan, Morton J, O'Reilly, Richard J, Kapoor, Neena, Satter, Lisa Forbes, Pai, Sung-Yun, Heimall, Jennifer, Chandra, Sharat, Ebens, Christen L, Chellapandian, Deepak, Williams, Olatundun, Burroughs, Lauri M, Saldana, Blachy Davila, Rayes, Ahmad, Madden, Lisa M, Chandrakasan, Shanmuganathan, Bednarski, Jeffrey J, II, DeSantes, Kenneth B, Cuvelier, Geoffrey D E, Teira, Pierre, Gillio, Alfred P, Eissa, Hesham, Knutsen, Alan P, Goldman, Frederick D, Aquino, Victor M, Shereck, Evan B, Moore, Theodore B, Caywood, Emi H, Lugt, Mark T Vander, Rozmus, Jacob, Broglie, Larisa, Yu, Lolie C, Shah, Ami J, Andolina, Jeffrey R, Liu, Xuerong, Parrott, Roberta E, Dara, Jasmeen, Prockop, Susan, Martinez, Caridad A, Kapadia, Malika, Jyonouchi, Soma C, Sullivan, Kathleen E, Bleesing, Jack J, Chaudhury, Sonali, Petrovic, Aleksandra, Keller, Michael D, Quigg, Troy C, Parikh, Suhag, Shenoy, Shalini, Seroogy, Christine, Rubin, Tamar, Decaluwe, Hélène, Routes, John M, Torgerson, Troy R, Leiding, Jennifer W, Pulsipher, Michael A, Kohn, Donald B, Griffith, Linda M, Haddad, Elie ^*, Dvorak, Christopher C ^*, Notarangelo, Luigi D ^*

Source: In The Lancet 8-14 July 2023 402(10396):129-140

The diagnosis of severe combined immunodeficiency: Implementation of the PIDTC 2022 Definitions

Authors: Dvorak, Christopher C., Haddad, Elie, Heimall, Jennifer, Dunn, Elizabeth, Cowan, Morton J., Pai, Sung-Yun, Kapoor, Neena, Satter, Lisa Forbes, Buckley, Rebecca H., O’Reilly, Richard J., Chandra, Sharat, Bednarski, Jeffrey J., Williams, Olatundun, Rayes, Ahmad, Moore, Theodore B., Ebens, Christen L., Davila Saldana, Blachy J., Petrovic, Aleksandra, Chellapandian, Deepak, Cuvelier, Geoffrey D.E., Vander Lugt, Mark T., Caywood, Emi H., Chandrakasan, Shanmuganathan, Eissa, Hesham, Goldman, Frederick D., Shereck, Evan, Aquino, Victor M., Desantes, Kenneth B., Madden, Lisa M., Miller, Holly K., Yu, Lolie, Broglie, Larisa, Gillio, Alfred, Shah, Ami J., Knutsen, Alan P., Andolina, Jeffrey P., Joshi, Avni Y., Szabolcs, Paul, Kapadia, Malika, Martinez, Caridad A., Parrot, Roberta E., Sullivan, Kathleen E., Prockop, Susan E., Abraham, Roshini S., Thakar, Monica S., Leiding, Jennifer W., Kohn, Donald B., Pulsipher, Michael A., Griffith, Linda M., Notarangelo, Luigi D., Puck, Jennifer M.

Source: In The Journal of Allergy and Clinical Immunology February 2023 151(2):547-555

The diagnosis of severe combined immunodeficiency (SCID): The Primary Immune Deficiency Treatment Consortium (PIDTC) 2022 Definitions

Authors: Dvorak, Christopher C., Haddad, Elie, Heimall, Jennifer, Dunn, Elizabeth, Buckley, Rebecca H., Kohn, Donald B., Cowan, Morton J., Pai, Sung-Yun, Griffith, Linda M., Cuvelier, Geoffrey D.E., Eissa, Hesham, Shah, Ami J., O’Reilly, Richard J., Pulsipher, Michael A., Wright, Nicola A.M., Abraham, Roshini S., Satter, Lisa Forbes, Notarangelo, Luigi D., Puck, Jennifer M.

Source: In The Journal of Allergy and Clinical Immunology February 2023 151(2):539-546

Aberrant T-cell exhaustion in severe combined immunodeficiency survivors with poor T-cell reconstitution after transplantation

Authors: Labrosse, Roxane, Boufaied, Ines, Bourdin, Benoîte, Gona, Saideep, Randolph, Haley E., Logan, Brent R., Bourbonnais, Sara, Berthe, Chloé, Chan, Wendy, Buckley, Rebecca H., Parrott, Roberta E., Cuvelier, Geoffrey D.E., Kapoor, Neena, Chandra, Sharat, Dávila Saldaña, Blachy J., Eissa, Hesham, Goldman, Fred D., Heimall, Jennifer, O’Reilly, Richard, Chaudhury, Sonali, Kolb, Edward A., Shenoy, Shalini, Griffith, Linda M., Pulsipher, Michael, Kohn, Donald B., Notarangelo, Luigi D., Pai, Sung-Yun, Cowan, Morton J., Dvorak, Christopher C., Haddad, Élie, Puck, Jennifer M., Barreiro, Luis B., Decaluwe, Hélène

Source: In The Journal of Allergy and Clinical Immunology January 2023 151(1):260-271

Biology-Inspired Dynamic Microphysiological System Approaches to Revolutionize Basic Research, Healthcare and Animal Welfare.

Authors: Marx, Uwe, Beken, Sonja, Zaozao Chen, Dehne, Eva-Maria, Doherty, Ann, Ewart, Lorna, Fitzpatrick, Suzanne C., Griffith, Linda G., Zhongze Gu, Hartung, Thomas, Hickman, James, Ingber, Donald E., Seiichi Ishida, Jayoung Jeong, Leist, Marcel, Levin, Lisa, Mendrick, Donna L., Pallocca, Giorgia, Platz, Stefan, Raschke, Marian

Source: Altex; 2025, Vol. 42 Issue 2, p204-223, 20p

Outcomes following treatment for ADA-deficient severe combined immunodeficiency: a report from the PIDTC

Authors: Cuvelier, Geoffrey D.E. ^*, Logan, Brent R., Prockop, Susan E., Buckley, Rebecca H., Kuo, Caroline Y., Griffith, Linda M., Liu, Xuerong, Yip, Alison, Hershfield, Michael S., Ayoub, Paul G., Moore, Theodore B., Dorsey, Morna J., O'Reilly, Richard J., Kapoor, Neena, Pai, Sung-Yun, Kapadia, Malika, Ebens, Christen L., Forbes Satter, Lisa R., Burroughs, Lauri M., Petrovic, Aleksandra, Chellapandian, Deepak, Heimall, Jennifer, Shyr, David C., Rayes, Ahmad, Bednarski, Jeffrey J., Chandra, Sharat, Chandrakasan, Shanmuganathan, Gillio, Alfred P., Madden, Lisa, Quigg, Troy C., Caywood, Emi H., Dávila Saldaña, Blachy J., DeSantes, Kenneth, Eissa, Hesham, Goldman, Frederick D., Rozmus, Jacob, Shah, Ami J., Vander Lugt, Mark T., Thakar, Monica S., Parrott, Roberta E., Martinez, Caridad, Leiding, Jennifer W., Torgerson, Troy R., Pulsipher, Michael A., Notarangelo, Luigi D., Cowan, Morton J., Dvorak, Christopher C., Haddad, Elie, Puck, Jennifer M., Kohn, Donald B.

Source: In Blood 18 August 2022 140(7):685-705

Toward a Better Understanding of the Atypical Features of Chronic Graft-Versus-Host Disease: A Report from the 2020 National Institutes of Health Consensus Project Task Force

Authors: Cuvelier, Geoffrey D.E., Schoettler, Michelle, Buxbaum, Nataliya P., Pinal-Fernandez, Iago, Schmalzing, Marc, Distler, Jörg H.W., Penack, Olaf, Santomasso, Bianca D., Zeiser, Robert, Angstwurm, Klemens, MacDonald, Kelli P.A., Kimberly, W. Taylor, Taylor, Naomi, Bilic, Ervina, Banas, Bernhard, Buettner-Herold, Maike, Sinha, Namita, Greinix, Hildegard T., Pidala, Joseph, Schultz, Kirk R., Williams, Kirsten M., Inamoto, Yoshihiro, Cutler, Corey, Griffith, Linda M., Lee, Stephanie J., Sarantopoulos, Stefanie, Pavletic, Steven Z., Wolff, Daniel

Source: In Transplantation and Cellular Therapy August 2022 28(8):426-445

The nuclear receptor THRB facilitates differentiation of human PSCs into more mature hepatocytes

Authors: Ma, Haiting, de Zwaan, Esmée, Guo, Yang Eric, Cejas, Paloma, Thiru, Prathapan, van de Bunt, Martijn, Jeppesen, Jacob F., Syamala, Sudeepa, Dall’Agnese, Alessandra, Abraham, Brian J., Fu, Dongdong, Garrett-Engele, Carrie, Lee, Tong Ihn, Long, Henry W., Griffith, Linda G., Young, Richard A., Jaenisch, Rudolf

Source: In Cell Stem Cell 5 May 2022 29(5):795-809

Poor T-cell receptor β repertoire diversity early posttransplant for severe combined immunodeficiency predicts failure of immune reconstitution

Authors: Delmonte, Ottavia M., Castagnoli, Riccardo, Yu, Jason, Dvorak, Christopher C., Cowan, Morton J., Dávila Saldaña, Blachy J., De Ravin, Suk See, Mamcarz, Ewelina, Chang, Catherine K., Daley, Stephen R., Griffith, Linda M., Notarangelo, Luigi D., Puck, Jennifer M.

Source: In The Journal of Allergy and Clinical Immunology March 2022 149(3):1113-1119

Endometrial cytokines in patients with and without endometriosis evaluated for infertility

Authors: Jørgensen, Hilde, Fedorcsak, Peter, Isaacson, Keith, Tevonian, Erin, Xiao, Amy, Beste, Michael, Qvigstad, Erik, Lauffenburger, Douglas, Griffith, Linda

Source: In Fertility and Sterility March 2022 117(3):629-640