Training self-supervised peptide sequence models on artificially chopped proteins

Authors: Sadeh, Gil, Wang, Zichen, Grewal, Jasleen, Rangwala, Huzefa, Price, Layne

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Machine Learning, Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2211.06428

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

Authors: Ellrott, Kyle ^{1, 25, ∗}, Wong, Christopher K. ^{2, 25}, Yau, Christina ^{3, 4, 25}, Castro, Mauro A.A. ^{5, 25}, Lee, Jordan A. ^{1, 25}, Karlberg, Brian J. ^{1, 25}, Grewal, Jasleen K. ^{6, 19, 25}, Lagani, Vincenzo ^{7, 8, 20, 25}, Tercan, Bahar ^{9, 25}, Friedl, Verena ², Hinoue, Toshinori ¹⁰, Uzunangelov, Vladislav ^{2, 21}, Westlake, Lindsay ^{11, 12}, Loinaz, Xavier ¹¹, Felau, Ina ¹³, Wang, Peggy I. ¹³, Kemal, Anab ¹³, Caesar-Johnson, Samantha J. ¹³, Shmulevich, Ilya ⁹, Lazar, Alexander J. ¹⁴, Tsamardinos, Ioannis ^{7, 15, 16}, Hoadley, Katherine A. ¹⁷, Robertson, A. Gordon ^{6, 22}, Knijnenburg, Theo A. ^{9, 23}, Benz, Christopher C. ⁴, Stuart, Joshua M. ², Zenklusen, Jean C. ¹³, Cherniack, Andrew D. ^{11, 12, 18, 26, ∗∗}, Laird, Peter W. ^{10, 26, 27, ∗∗∗}

Source: In Cancer Cell 10 February 2025 43(2):195-212

Neurofilament light and glial fibrillary acidic protein in mood and anxiety disorders: A systematic review and meta-analysis

Authors: JY Kang, Matthew ^{a, b, ⁎}, Grewal, Jasleen ^c, Eratne, Dhamidhu ^{a, b}, Malpas, Charles ^{d, e}, Chiu, Wei-Hsuan ^{a, b}, Katisko, Kasper ^f, Solje, Eino ^{f, g}, Santillo, Alexander F ^h, Mitchell, Philip B. ⁱ, Hopwood, Malcolm ^b, Velakoulis, Dennis ^{a, b}

Source: In Brain Behavior and Immunity January 2025 123:1091-1102

Understanding the barriers and facilitators of healthcare services for brain injury and concurrent mental health and substance use issues: a qualitative study.

Authors: Grewal, Jasleen^1,2 (AUTHOR), Kennedy, Cole J.^3,4 (AUTHOR), Mamman, Rinni^1,2 (AUTHOR), Biagioni, Janelle Breese⁵ (AUTHOR), Garcia-Barrera, Mauricio A.^3,4 (AUTHOR), Schmidt, Julia^1,2,6 (AUTHOR) julia.schmidt@ubc.ca

Source: BMC Health Services Research. 8/2/2024, Vol. 24 Issue 1, p1-11. 11p.

Priorities for quality of life after traumatic brain injury.

Authors: Grewal, Jasleen^1,2 (AUTHOR), Citton, Kix^3,4 (AUTHOR), Sing, Geoff^4,5 (AUTHOR), Biagioni, Janelle Breese⁶ (AUTHOR), Schmidt, Julia^1,2,7 (AUTHOR) julia.schmidt@ubc.ca

Source: PLoS ONE. 7/5/2024, Vol. 19 Issue 7, p1-18. 18p.

Subject Terms: *BRAIN injuries, *QUALITY of life, *CIRCLE, *BASIC needs, *SOCIAL support, *EVERYDAY life

Biopsychosocial factors of quality of life in individuals with moderate to severe traumatic brain injury: a scoping review.

Authors: Mamman, Rinni^1,2 (AUTHOR), Grewal, Jasleen^1,2 (AUTHOR), Garrone, Juliana Nicole³ (AUTHOR), Schmidt, Julia^2,4 (AUTHOR) julia.schmidt@ubc.ca

Source: Quality of Life Research. Apr2024, Vol. 33 Issue 4, p877-901. 25p.

Subject Terms: *BRAIN injuries, *QUALITY of life, *PSYCHOLOGICAL factors, *HOSPITAL admission & discharge, *INTRACRANIAL pressure, *SOCIAL participation

The impact of whole genome and transcriptome analysis (WGTA) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies

Authors: Tessier‐Cloutier, Basile, Grewal, Jasleen K, Jones, Martin R, Pleasance, Erin, Shen, Yaoqing, Cai, Ellen, Dunham, Chris, Hoang, Lynn, Horst, Basil, Huntsman, David G, Ionescu, Diana, Karnezis, Anthony N, Lee, Anna F, Lee, Cheng Han, Lee, Tae Hoon, Twa, David DW, Mungall, Andrew J, Mungall, Karen, Naso, Julia R, Ng, Tony, Schaeffer, David F, Sheffield, Brandon S, Skinnider, Brian, Smith, Tyler, Williamson, Laura, Zhong, Ellia, Regier, Dean A, Laskin, Janessa, Marra, Marco A, Gilks, C Blake, Jones, Steven JM, Yip, Stephen

Source: Journal of pathology.Clinical research. 8(4):395-407

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100151817136.0x000001&indx=1&recIds=ETOCvdc_100151817136.0x000001

Corrigendum to "Neurofilament light and glial fibrillary acidic protein in mood and anxiety disorders: A systematic review and meta-analysis" [Brain, Behavior, and Immunity 123 (2025) 1091–1102].

Authors: Kang, Matthew J.Y.^1,2 (AUTHOR) Matthew.kang1@unimelb.edu.au, Grewal, Jasleen³ (AUTHOR) Jas.grewal@alfred.org.au, Eratne, Dhamidhu^1,2 (AUTHOR) deratne@unimelb.edu.au, Malpas, Charles^4,5 (AUTHOR) charles.malpas@unimelb.edu.au, Chiu, Wei-Hsuan^1,2 (AUTHOR) whchiu@student.unimelb.edu.au, Katisko, Kasper⁶ (AUTHOR) kasper.katisko@uef.fi, Solje, Eino^6,7 (AUTHOR) eino.solje@uef.fi, Santillo, Alexander F.⁸ (AUTHOR) alexander.frizell_santillo@med.lu.se, Mitchell, Philip B.⁹ (AUTHOR) phil.mitchell@unsw.edu.au, Hopwood, Malcolm² (AUTHOR) mhopwood@unimelb.edu.au, Velakoulis, Dennis^1,2 (AUTHOR) Dennis.Velakoulis@mh.org.au

Source: Brain, Behavior & Immunity. Mar2025, Vol. 125, p466-470. 5p.

Strong diagnostic performance of plasma ptau217 for CSF biomarker-defined young-onset Alzheimer disease in a diagnostically heterogeneous clinical cohort.

Authors: Eratne, Dhamidhu, Li, Qiao-Xin, Lewis, Courtney, Dang, Christa, Kang, Matthew J. Y., Grewal, Jasleen, Loi, Samantha, Walterfang, Mark, Evans, Andrew H., Malpas, Charles B., Pedrini, Steve, Martins, Ralph, Chatterjee, Pratishtha, Zetterberg, Henrik, Blennow, Kaj, Berkovic, Samuel F., Santillo, Alexander F., Collins, Steven, Masters, Colin L., Velakoulis, Dennis

Source: Journal of Neurology; Jan2025, Vol. 272 Issue 1, p1-12, 12p

Young and under the influence: A systematic literature review of the impact of cannabis on the driving performance of youth

Authors: Alvarez, Liliana ^*, Colonna, Robert, Kim, Sean, Chen, Caron, Chippure, Katherine, Grewal, Jasleen, Kimm, Chris, Randell, Travis, Leung, Victoria

Source: In Accident Analysis and Prevention March 2021 151

Plasma and CSF neurofilament light chain distinguish neurodegenerative from primary psychiatric conditions in a clinical setting.

Authors: Eratne, Dhamidhu, Kang, Matthew J. Y., Lewis, Courtney, Dang, Christa, Malpas, Charles B., Keem, Michael, Grewal, Jasleen, Marinov, Vladimir, Coe, Amy, Kaylor‐Hughes, Cath, Borchard, Thomas, Keng‐Hong, Chhoa, Waxmann, Alexandra, Saglam, Burcu, Kalincik, Tomas, Kanaan, Richard, Kelso, Wendy, Evans, Andrew, Farrand, Sarah, Loi, Samantha

Source: Alzheimer's & Dementia: The Journal of the Alzheimer's Association; Nov2024, Vol. 20 Issue 11, p7989-8001, 13p

The use of virtual reality for activities of daily living rehabilitation after brain injury: A scoping review.

Authors: Grewal, Jasleen^1,2, Eng, Janice J.^2,3, Sakakibara, Brodie M.^2,4,5, Schmidt, Julia^2,5 julia.schmidt@ubc.ca

Source: Australian Occupational Therapy Journal. Oct2024, Vol. 71 Issue 5, p868-893. 26p.

Subject Terms: *ARM physiology, *REHABILITATION for brain injury patients, *MEDICAL information storage & retrieval systems, *MOTOR ability, *RESEARCH funding, *TASK performance, *SHOPPING, *OCCUPATIONAL therapists, *CINAHL database, *FUNCTIONAL status, *TREATMENT effectiveness, *DESCRIPTIVE statistics, *OCCUPATIONAL therapy, *VIRTUAL reality, *SYSTEMATIC reviews, *SOCIAL context, *MEDLINE, *ELECTROMYOGRAPHY, *ABILITY, *CONCEPTUAL structures, *ATTITUDES of medical personnel, *INDIVIDUALIZED medicine, *DATA analysis software, *ACTIVITIES of daily living, *TRAINING, *COGNITION, *PSYCHOLOGY information storage & retrieval systems, *RANGE of motion of joints, *EVALUATION

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Casting a Wider NET: An Unusual Cause of Acute Liver Failure in a Pregnant Patient

Authors: Grewal, Jasleen, Benhammou, Jihane, Patel, Priyal V., Saab, Sammy, Choi, Gina

Source: Digestive diseases and sciences. 65(11):3102-3105

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100176116242.0x000001&indx=1&recIds=ETOCvdc_100176116242.0x000001

Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes

Authors: Pleasance, Erin, Titmuss, Emma, Williamson, Laura, Kwan, Harwood, Culibrk, Luka, Zhao, Eric Y., Dixon, Katherine, Fan, Kevin, Bowlby, Reanne, Jones, Martin R., Shen, Yaoqing, Grewal, Jasleen K., Ashkani, Jahanshah, Wee, Kathleen, Grisdale, Cameron J., Thibodeau, My Linh, Bozoky, Zoltan, Pearson, Hillary, Majounie, Elisa, Vira, Tariq, Shenwai, Reva, Mungall, Karen L., Chuah, Eric, Davies, Anna, Warren, Mya, Reisle, Caralyn, Bonakdar, Melika, Taylor, Gregory A., Csizmok, Veronika, Chan, Simon K., Zong, Zusheng, Bilobram, Steve, Muhammadzadeh, Amir, D'Souza, Darryl, Corbett, Richard D., MacMillan, Daniel, Carreira, Marcus, Choo, Caleb, Bleile, Dustin, Sadeghi, Sara, Zhang, Wei, Wong, Tina, Cheng, Dean, Brown, Scott D., Holt, Robert A., Moore, Richard A., Mungall, Andrew J., Zhao, Yongjun, Nelson, Jessica, Fok, Alexandra, Ma, Yussanne, Lee, Michael K. C., Lavoie, Jean-Michel, Mendis, Shehara, Karasinska, Joanna M., Deol, Balvir, Fisic, Ana, Schaeffer, David F., Yip, Stephen, Schrader, Kasmintan, Regier, Dean A., Weymann, Deirdre, Chia, Stephen, Gelmon, Karen, Tinker, Anna, Sun, Sophie, Lim, Howard, Renouf, Daniel J., Laskin, Janessa, Jones, Steven J. M., Marra, Marco A.

Source: Nature cancer. 1(4):452-468

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172463393.0x000001&indx=1&recIds=ETOCvdc_100172463393.0x000001

Rise of the Machines: Advances in Deep Learning for Cancer Diagnosis

Authors: Levine, Adrian B., Schlosser, Colin, Grewal, Jasleen, Coope, Robin, Jones, Steve J.M., Yip, Stephen

Source: In Trends in Cancer March 2019 5(3):157-169

A qualitative study of individuals with acquired brain injury’ and program facilitators’ experiences in virtual acquired brain injury community support programs.

Authors: Grewal, Jasleen^1,2 (AUTHOR), Vu Nguyen, Sarah³ (AUTHOR), Nonis, Nichola³ (AUTHOR), Singh, Hardeep^4,5,6 (AUTHOR) hardeepk.singh@utoronto.ca

Source: Disability & Rehabilitation. Jul2024, p1-10. 10p.

Subject Terms: *COMMUNITY-based programs, *BRAIN injuries, *VIRTUAL communities, *SOCIAL support, *COMMUNITY support

Herpes zoster vaccination efficacy in the long-term care facility population: a qualitative systematic review

Authors: Senderovich, Helen, Grewal, Jasleen, Mujtaba, Maheen

Source: Current medical research and opinion. 35(8):1451-1462

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100098741095.0x000001&indx=1&recIds=ETOCvdc_100098741095.0x000001

Ulcerative jejunitis in refractory celiac disease diagnosed on capsule endoscopy

Authors: Grewal, Jasleen, Condon, Ashwinee, Marya, Neil B., Kim, Stephen

Source: Gastrointestinal endoscopy. 92(2):430-432

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100117131911.0x000001&indx=1&recIds=ETOCvdc_100117131911.0x000001

Activating mutations in genes related to TCR signaling in angioimmunoblastic and other follicular helper T-cell–derived lymphomas

Authors: Vallois, David ^*, Dobay, Maria Pamela D. ^*, Morin, Ryan D., Lemonnier, François, Missiaglia, Edoardo, Juilland, Mélanie, Iwaszkiewicz, Justyna, Fataccioli, Virginie, Bisig, Bettina, Roberti, Annalisa, Grewal, Jasleen, Bruneau, Julie, Fabiani, Bettina, Martin, Antoine, Bonnet, Christophe, Michielin, Olivier, Jais, Jean-Philippe, Figeac, Martin, Bernard, Olivier A., Delorenzi, Mauro, Haioun, Corinne, Tournilhac, Olivier, Thome, Margot, Gascoyne, Randy D., Gaulard, Philippe, de Leval, Laurence

Source: In Blood 15 September 2016 128(11):1490-1502