Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris.

Authors: Jennifer W Israel, Megan L Martik, Maria Byrne, Elizabeth C Raff, Rudolf A Raff, David R McClay, Gregory A Wray

Source: PLoS Biology, Vol 14, Iss 3, p e1002391 (2016)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4778923?pdf=render; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/a084fcedf9d14af88a769584312ead87

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

Authors: David A Garfield, Daniel E Runcie, Courtney C Babbitt, Ralph Haygood, William J Nielsen, Gregory A Wray

Source: PLoS Biology, Vol 11, Iss 10, p e1001696 (2013)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3812118?pdf=render; https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/e2acbfd0fce14935ba7c34ecf410eed3

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Authors: Yoichiro Shibata, Nathan C Sheffield, Olivier Fedrigo, Courtney C Babbitt, Matthew Wortham, Alok K Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Stephen C J Parker, Elliott H Margulies, Gregory A Wray, Terrence S Furey, Gregory E Crawford

Source: PLoS Genetics, Vol 8, Iss 6, p e1002789 (2012)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3386175?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/9e59bc8a7ca044b99408318226a660e2

A pipeline to determine RT-QPCR control genes for evolutionary studies: application to primate gene expression across multiple tissues.

Authors: Olivier Fedrigo, Lisa R Warner, Adam D Pfefferle, Courtney C Babbitt, Peter Cruz-Gordillo, Gregory A Wray

Source: PLoS ONE, Vol 5, Iss 9, p e12489 (2010)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2932733?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f3ce320882b24a83a0fcfb2378e372a4

Genomic insights into Plasmodium vivax population structure and diversity in central Africa

Authors: Valerie Gartner, Benjamin D. Redelings, Claudia Gaither, Jonathan B. Parr, Albert Kalonji, Fernandine Phanzu, Nicholas F. Brazeau, Jonathan J. Juliano, Gregory A. Wray

Source: Malaria Journal, Vol 23, Iss 1, Pp 1-9 (2024)

Subject Terms: Malaria, Plasmodium vivax, Genome, Duffy negative, Sub-Saharan Africa, Central Africa, Arctic medicine. Tropical medicine, RC955-962, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: https://doaj.org/toc/1475-2875

Access URL: https://doaj.org/article/b557223c014248cb943f2f6fb4a153f6

Ancient and recent positive selection transformed opioid cis-regulation in humans.

Authors: Matthew V Rockman, Matthew W Hahn, Nicole Soranzo, Fritz Zimprich, David B Goldstein, Gregory A Wray

Source: PLoS Biology, Vol 3, Iss 12, p e387 (2005)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/e1421faa42f2409cb8a8191d538bae03

CRISPR/Cas9-Mediated Disruption of Endo16 Cis-Regulatory Elements in Sea Urchin Embryos

Authors: Lili Xing, Lingyu Wang, Femke Roos, Michelle Lee, Gregory A. Wray

Source: Fishes, Vol 8, Iss 2, p 118 (2023)

Subject Terms: CRISPR/Cas9, Endo16, enhancer, gene disruption, sea urchin, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.mdpi.com/2410-3888/8/2/118; https://doaj.org/toc/2410-3888

Access URL: https://doaj.org/article/337e097aac694e8fa937865af4e0246b

Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function

Authors: Alejandro Berrio, Valerie Gartner, Gregory A. Wray

Source: PeerJ, Vol 8, p e10234 (2020)

Subject Terms: SARS-CoV-2, Evolution, Positive selection, COVID-19, Genome, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/10234.pdf; https://peerj.com/articles/10234/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/70c10f80dbc247e382bd7f23c28fb4d1

The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo

Authors: Nicholas F. Brazeau (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Cedar L. Mitchell (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Andrew P. Morgan (Medical Scientist Training Program, School of Medicine, University of North Carolina), Molly Deutsch-Feldman (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Oliver John Watson (Medical Research Council Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Imperial College London), Kyaw L. Thwai (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Pere Gelabert (Department of Evolutionary Anthropology, Faculty of Life Sciences, University of Vienna), Lucy van Dorp (UCL Genetics Institute, University College London), Corinna Y. Keeler (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Andreea Waltmann (Institute for Global Health and Infectious Diseases, School of Medicine, University of North Carolina), Michael Emch (epartment of Geography, University of North Carolina), Valerie Gartner (Department of Biology, Duke University), Ben Redelings (Department of Biology, Duke University), Gregory A. Wray (Department of Biology, Duke University), Melchior K. Mwandagalirwa (Kinshasa School of Public Health), Antoinette K. Tshefu (Kinshasa School of Public Health), Joris L. Likwela (Programme National de la Lutte Contre le Paludisme, Kinshasa), Jessie K. Edwards (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Robert Verity (Medical Research Council Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, Imperial College London), Jonathan B. Parr (Division of Infectious Diseases, School of Medicine, University of North Carolina), Steven R. Meshnick (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina), Jonathan J. Juliano (Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1604228

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Feedback circuits are numerous in embryonic gene regulatory networks and offer a stabilizing influence on evolution of those networks

Authors: Abdull Jesus Massri, Brennan McDonald, Gregory A. Wray, David R. McClay

Source: EvoDevo, Vol 14, Iss 1, Pp 1-13 (2023)

Subject Terms: Gene regulatory networks, Feedback circuits, Evolutionary mechanism, Embryonic specification, Sea urchin development, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2041-9139

Access URL: https://doaj.org/article/60a80f33b3924f3c81d85468c7c385f1

The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo

Authors: Nicholas F. Brazeau, Cedar L. Mitchell, Andrew P. Morgan, Molly Deutsch-Feldman, Oliver John Watson, Kyaw L. Thwai, Pere Gelabert, Lucy van Dorp, Corinna Y. Keeler, Andreea Waltmann, Michael Emch, Valerie Gartner, Ben Redelings, Gregory A. Wray, Melchior K. Mwandagalirwa, Antoinette K. Tshefu, Joris L. Likwela, Jessie K. Edwards, Robert Verity, Jonathan B. Parr, Steven R. Meshnick, Jonathan J. Juliano

Source: Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/c229f4eb257540259fec2b069685f790

The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia

Authors: Hao Song, Ximing Guo, Lina Sun, Qianghui Wang, Fengming Han, Haiyan Wang, Gregory A. Wray, Phillip Davidson, Qing Wang, Zhi Hu, Cong Zhou, Zhenglin Yu, Meijie Yang, Jie Feng, Pu Shi, Yi Zhou, Libin Zhang, Tao Zhang

Source: BMC Biology, Vol 19, Iss 1, Pp 1-20 (2021)

Subject Terms: IAP gene family, Molecular evolution, Mollusca, Gene duplication, Divergence, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/6f1326837e3045d88aa78e7c3b44cbea

Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral

Authors: Alejandro Berrio, Ralph Haygood, Gregory A. Wray

Source: BMC Genomics, Vol 21, Iss 1, Pp 1-16 (2020)

Subject Terms: Adaptation, Positive selection, Analytical method, adaptiPhy, Proxy, Neutral, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-6752-4; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/95f402ed3e1a4081a71ac844dc7f3a62

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia

Authors: Julien Bryois, Melanie E. Garrett, Lingyun Song, Alexias Safi, Paola Giusti-Rodriguez, Graham D. Johnson, Annie W. Shieh, Alfonso Buil, John F. Fullard, Panos Roussos, Pamela Sklar, Schahram Akbarian, Vahram Haroutunian, Craig A. Stockmeier, Gregory A. Wray, Kevin P. White, Chunyu Liu, Timothy E. Reddy, Allison Ashley-Koch, Patrick F. Sullivan, Gregory E. Crawford

Source: Nature Communications, Vol 9, Iss 1, Pp 1-15 (2018)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/08c8eca6a4644c7a80907c7bfa108e99