The genomic origin of early maize in eastern North America

Authors: Ramos-Madrigal, Jazmín ^{1, 14, ∗}, Fritz, Gayle J. ², Schroeder, Bryon ³, Smith, Bruce ⁴, Sánchez-Barreiro, Fátima ¹, Carøe, Christian ¹, Runge, Anne Kathrine Wiborg ⁵, Boer, Sarah ⁵, McGrath, Krista ⁵, Vieira, Filipe G. ⁶, Liu, Shanlin ^{7, 8}, da Fonseca, Rute R. ⁹, Guo, Chunxue ⁸, Zhang, Guojie ¹⁰, Petersen, Bent ^{1, 11}, Sicheritz-Pontén, Thomas ^{1, 11}, Gopalakrishnan, Shyam ^{1, 12}, Gilbert, M. Thomas P. ^{1, 13}, Wales, Nathan ^{5, ∗∗}

Source: In Cell 9 January 2025 188(1):33-43

Transient growth in a flat plate boundary layer under a stream with uniform shear

Authors: Gopalakrishnan, Shyam Sunder, Mandal, Alakesh Chandra

Subject Terms: Physics - Fluid Dynamics

Access URL: http://arxiv.org/abs/2107.08696

Experimental studies on the frequency selection in flat plate wakes: mean flow stability analyses and low dimensional modeling

Authors: Dutta, Dipankar, Kanshana, Indra, Gopalakrishnan, Shyam Sunder, Mandal, Alakesh Chandra

Subject Terms: Physics - Fluid Dynamics

Access URL: http://arxiv.org/abs/2106.01247

Dissipative light bullets in Kerr cavities: multi-stability, clustering, and rogue waves

Authors: Gopalakrishnan, Shyam Sunder, Panajotov, Krassimir, Taki, Majid, Tlidi, Mustapha

Source: Phys. Rev. Lett. 126, 153902 (2021)

Subject Terms: Physics - Optics, Nonlinear Sciences - Pattern Formation and Solitons

Access URL: http://arxiv.org/abs/2011.09195

Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region

Authors: Skovrind, Mikkel, Pacheco, George, Christensen, Emil Aputsiaq Flindt, Gopalakrishnan, Shyam, Fietz, Katharina, Holm-Hansen, Tore Hejl, Vieira, Filipe Garrett, Krag, Marcus Anders, Carl, Henrik, Gilbert, M.Thomas P., Olsen, Morten Tange, Møller, Peter Rask

Source: In Fisheries Research December 2023 268

The ancestry and geographical origins of St Helena’s liberated Africans

Authors: Sandoval-Velasco, Marcela, Jagadeesan, Anuradha, Ramos-Madrigal, Jazmín, Ávila-Arcos, María C., Fortes-Lima, Cesar A., Watson, Judy, Johannesdóttir, Erna, Cruz-Dávalos, Diana I., Gopalakrishnan, Shyam, Moreno-Mayar, J. Víctor, Niemann, Jonas, Renaud, Gabriel, Robson Brown, Katharine A., Bennett, Helena, Pearson, Andrew, Helgason, Agnar, Gilbert, M. Thomas P., Schroeder, Hannes

Source: In The American Journal of Human Genetics 7 September 2023 110(9):1590-1599

The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs

Authors: Ciucani, Marta Maria, Ramos-Madrigal, Jazmín, Hernández-Alonso, Germán, Carmagnini, Alberto, Aninta, Sabhrina Gita, Sun, Xin, Scharff-Olsen, Camilla Hjorth, Lanigan, Liam Thomas, Fracasso, Ilaria, Clausen, Cecilie G., Aspi, Jouni, Kojola, Ilpo, Baltrūnaitė, Laima, Balčiauskas, Linas, Moore, Jane, Åkesson, Mikael, Saarma, Urmas, Hindrikson, Maris, Hulva, Pavel, Bolfíková, Barbora Černá, Nowak, Carsten, Godinho, Raquel, Smith, Steve, Paule, Ladislav, Nowak, Sabina, Mysłajek, Robert W., Lo Brutto, Sabrina, Ciucci, Paolo, Boitani, Luigi, Vernesi, Cristiano, Stenøien, Hans K., Smith, Oliver, Frantz, Laurent, Rossi, Lorenzo, Angelici, Francesco Maria, Cilli, Elisabetta, Sinding, Mikkel-Holger S., Gilbert, M. Thomas P., Gopalakrishnan, Shyam

Source: In iScience 18 August 2023 26(8)

The genetic history of Scandinavia from the Roman Iron Age to the present

Authors: Rodríguez-Varela, Ricardo, Moore, Kristjan H.S., Ebenesersdóttir, S. Sunna, Kilinc, Gulsah Merve, Kjellström, Anna, Papmehl-Dufay, Ludvig, Alfsdotter, Clara, Berglund, Birgitta, Alrawi, Loey, Kashuba, Natalija, Sobrado, Verónica, Lagerholm, Vendela Kempe, Gilbert, Edmund, Cavalleri, Gianpiero L., Hovig, Eivind, Kockum, Ingrid, Olsson, Tomas, Alfredsson, Lars, Hansen, Thomas F., Werge, Thomas, Munters, Arielle R., Bernhardsson, Carolina, Skar, Birgitte, Christophersen, Axel, Turner-Walker, Gordon, Gopalakrishnan, Shyam, Daskalaki, Eva, Omrak, Ayça, Pérez-Ramallo, Patxi, Skoglund, Pontus, Girdland-Flink, Linus, Gunnarsson, Fredrik, Hedenstierna-Jonson, Charlotte, Gilbert, M. Thomas P., Lidén, Kerstin, Jakobsson, Mattias, Einarsson, Lars, Victor, Helena, Krzewińska, Maja, Zachrisson, Torun, Storå, Jan, Stefánsson, Kári, Helgason, Agnar, Götherström, Anders

Source: In Cell 5 January 2023 186(1):32-46

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

Authors: Feuerborn, Tatiana R., Carmagnini, Alberto, Losey, Robert J., Nomokonova, Tatiana, Askeyev, Arthur, Askeyev, Igor, Askeyev, Oleg, Antipina, Ekaterina E., Appelt, Martin, Bachura, Olga P., Beglane, Fiona, Bradley, Daniel G., Daly, Kevin G., Gopalakrishnan, Shyam, Gregersen, Kristian Murphy, Guo, Chunxue, Gusev, Andrei V., Jones, Carleton, Kosintsev, Pavel A., Kuzmin, Yaroslav V., Mattiangeli, Valeria, Perri, Angela R., Plekhanov, Andrei V., Ramos-Madrigal, Jazmín, Schmidt, Anne Lisbeth, Shaymuratova, Dilyara, Smith, Oliver, Yavorskaya, Lilia V., Zhang, Guojie, Willerslev, Eske, Meldgaard, Morten, Gilbert, M. Thomas P., Larson, Greger, Dalén, Love, Hansen, Anders J., Sinding, Mikkel-Holger S., Frantz, Laurent

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Sep . 118(39), 1-5.

Access URL: https://www.jstor.org/stable/27075815

Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities

Authors: Piñeiro, Rosalía, Hardy, Olivier J., Tovar, Carolina, Gopalakrishnan, Shyam, Vieira, Filipe Garrett, Gilbert, M. Thomas P.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Jul 01. 118(27), 1-9.

Access URL: https://www.jstor.org/stable/27052378

Conservation genomics of the endangered Seychelles Magpie‐Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

Authors: Cavill, Emily L., Gopalakrishnan, Shyam, Puetz, Lara C., Ribeiro, Ângela M., Mak, Sarah S. T., da Fonseca, Rute R., Pacheco, George, Dunlop, Bronwyn, Accouche, Wilna, Shah, Nirmal, Zora, Anna, Calabrese, Licia, Genner, Martin, Jones, Gareth, Guo, Chunxue, Zhang, Guojie, Gilbert, M. Thomas P.

Source: Ibis. 164(2):396-410

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100144217849.0x000001&indx=1&recIds=ETOCvdc_100144217849.0x000001

Beyond population size: Whole-genome data reveal bottleneck legacies in the peninsular Italian wolf.

Authors: Battilani, Daniele, Gargiulo, Roberta, Caniglia, Romolo, Fabbri, Elena, Madrigal, Jazmín Ramos-, Fontsere, Claudia, Ciucani, Marta Maria, Gopalakrishnan, Shyam, Girardi, Matteo, Fracasso, Ilaria, Mastroiaco, Matteo, Ciucci, Paolo, Vernesi, Cristiano

Source: Journal of Heredity; Jan2025, Vol. 116 Issue 1, p10-23, 14p

Subject Terms: GENETIC load, WOLVES, GENETIC variation, HABITAT conservation, GENOMICS, INBREEDING

Ancient Maltese genomes and the genetic geography of Neolithic Europe

Authors: Ariano, Bruno, Mattiangeli, Valeria, Breslin, Emily M., Parkinson, Eóin W., McLaughlin, T. Rowan, Thompson, Jess E., Power, Ronika K., Stock, Jay T., Mercieca-Spiteri, Bernardette, Stoddart, Simon, Malone, Caroline, Gopalakrishnan, Shyam, Cassidy, Lara M., Bradley, Daniel G.

Source: In Current Biology 20 June 2022 32(12):2668-2680

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

Authors: Fotakis, Anna K., Denham, Sean D., Mackie, Meaghan, Orbegozo, Miren Iraeta, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper V., Cappellini, Enrico, Zhang, Guojie, Christophersen, Axel, Gilbert, M. Thomas P., Vågene, Åshild J.

Source: Philosophical Transactions: Biological Sciences, 2020 Nov . 375(1812), 1-10.

Access URL: https://www.jstor.org/stable/27097704

The evolutionary history of extinct and living lions

Authors: de Manuel, Marc, Barnett, Ross, Sandoval-Velasco, Marcela, Yamaguchi, Nobuyuki, Vieira, Filipe Garrett, Mendoza, M. Lisandra Zepeda, Liu, Shiping, Martin, Michael D., Sinding, Mikkel-Holger S., Mak, Sarah S. T., Carøe, Christian, Liu, Shanlin, Guo, Chunxue, Zheng, Jiao, Zazula, Grant, Baryshnikov, Gennady, Eizirik, Eduardo, Koepfli, Klaus-Peter, Johnson, Warren E., Antunes, Agostinho, Sicheritz-Ponten, Thomas, Gopalakrishnan, Shyam, Larson, Greger, Yang, Huanming, O’Brien, Stephen J., Hansen, Anders J., Zhang, Guojie, Marques-Bonet, Tomas, Gilbert, M. Thomas P.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2020 May . 117(20), 10927-10934.

Access URL: https://www.jstor.org/stable/26931155

Influence of past climate change on phylogeography and demographic history of narwhals, Monodon monoceros

Authors: Louis, Marie, Skovrind, Mikkel, Castruita, Jose Alfredo Samaniego, Garilao, Cristina, Kaschner, Kristin, Gopalakrishnan, Shyam, Haile, James S., Lydersen, Christian, Kovacs, Kit M., Garde, Eva, Heide-Jørgensen, Mads Peter, Postma, Lianne, Ferguson, Steven H., Willerslev, Eske, Lorenzen, Eline D.

Source: Proceedings: Biological Sciences, 2020 Apr . 287(1925), 1-9.

Access URL: https://www.jstor.org/stable/27096287

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

Authors: Liu, Shanlin, Westbury, Michael V., Dussex, Nicolas, Mitchell, Kieren J., Sinding, Mikkel-Holger S., Heintzman, Peter D., Duchêne, David A., Kapp, Joshua D., von Seth, Johanna, Heiniger, Holly, Sánchez-Barreiro, Fátima, Margaryan, Ashot, André-Olsen, Remi, De Cahsan, Binia, Meng, Guanliang, Yang, Chentao, Chen, Lei, van der Valk, Tom, Moodley, Yoshan, Rookmaaker, Kees, Bruford, Michael W., Ryder, Oliver, Steiner, Cynthia, Bruins-van Sonsbeek, Linda G.R., Vartanyan, Sergey, Guo, Chunxue, Cooper, Alan, Kosintsev, Pavel, Kirillova, Irina, Lister, Adrian M., Marques-Bonet, Tomas, Gopalakrishnan, Shyam, Dunn, Robert R., Lorenzen, Eline D., Shapiro, Beth, Zhang, Guojie, Antoine, Pierre-Olivier, Dalén, Love, Gilbert, M. Thomas P.

Source: In Cell 16 September 2021 184(19):4874-4885

Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū

Authors: Niemann, Jonas, Gopalakrishnan, Shyam, Yamaguchi, Nobuyuki, Ramos-Madrigal, Jazmín, Wales, Nathan, Gilbert, M. Thomas P., Sinding, Mikkel-Holger S.

Source: In iScience 22 January 2021 24(1)

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

Authors: Sánchez‐Barreiro, Fátima, Gopalakrishnan, Shyam, Ramos‐Madrigal, Jazmín, Westbury, Michael V., Manuel, Marc, Margaryan, Ashot, Ciucani, Marta M., Vieira, Filipe G., Patramanis, Yannis, Kalthoff, Daniela C., Timmons, Zena, Sicheritz‐Pontén, Thomas, Dalén, Love, Ryder, Oliver A., Zhang, Guojie, Marquès‐Bonet, Tomás, Moodley, Yoshan, Gilbert, M. Thomas P.

Source: Molecular ecology. 30(23):6355-6369

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100136049487.0x000001&indx=1&recIds=ETOCvdc_100136049487.0x000001

Circumpolar phylogeography and demographic history of beluga whales reflect past climatic fluctuations

Authors: Skovrind, Mikkel, Louis, Marie, Westbury, Michael V., Garilao, Cristina, Kaschner, Kristin, Castruita, José Alfredo Samaniego, Gopalakrishnan, Shyam, Knudsen, Steen Wilhelm, Haile, James S., Dalén, Love, Meshchersky, Ilya G., Shpak, Olga V., Glazov, Dmitry M., Rozhnov, Viatcheslav V., Litovka, Dennis I., Krasnova, Vera V., Chernetsky, Anton D., Bel'kovich, Vsevolod M., Lydersen, Christian, Kovacs, Kit M., Heide‐Jørgensen, Mads Peter, Postma, Lianne, Ferguson, Steven H., Lorenzen, Eline D.

Source: Molecular ecology. 30(11):2543-2559

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100123875759.0x000001&indx=1&recIds=ETOCvdc_100123875759.0x000001