Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data

Authors: Zhao, Corey, Shrestha Gurung, Bichar Dip, Hartman, Tim, Do, Tuyen, Hoffman, Mariah, Gnimpieba, Etienne Z.

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :6896-6898 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Efficient Prediction of Protein-Ligand Binding Using ESM-2 and Mol2vec with Random Forest Model

Authors: Shrestha Gurung, Bichar Dip, Rayamajhi, Manish, Baidya, Anushuya, Growney, Owen, Dongmo Mafo, Helena Naomie, Choi, Yun-Seok, Gnimpieba, Etienne Z.

Source: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2024 IEEE International Conference on. :6893-6895 Dec, 2024

Relation: 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20

Authors: Singh, Ram Nageena, Gnimpieba, Etienne Z., Sani, Rajesh Kumar

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :4509-4512 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery

Authors: Aryal, Shiva, Do, Tuyen, Heyojoo, Bisesh, Chataut, Sandeep, Gurung, Bichar Dip Shrestha, Gadhamshetty, Venkataramana, Gnimpieba, Etienne

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Computation and Language

Access URL: http://arxiv.org/abs/2404.08511

Comparative Study of Domain Driven Terms Extraction Using Large Language Models

Authors: Chataut, Sandeep, Do, Tuyen, Gurung, Bichar Dip Shrestha, Aryal, Shiva, Khanal, Anup, Lushbough, Carol, Gnimpieba, Etienne

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2404.02330

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation

Authors: Shrestha Gurung, Bichar Dip, Khanal, Anup, Hartman, Timothy W., Do, Tuyen, Chataut, Sandeep, Lushbough, Carol, Gadhamshetty, Venkataramana, Gnimpieba, Etienne Z.

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :4500-4502 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach

Authors: Devadig, Ramesh, Shrestha Gurung, Bichar Dip, Gnimpieba, Etienne, Jasthi, Bharath, Gadhamshetty, Venkataramana

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :4494-4496 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model

Authors: Do, Tuyen, Shrestha Gurung, Bichar Dip, Aryal, Shiva, Khanal, Anup, Chataut, Sandeep, Gadhamshetty, Venkataramana, Lushbough, Carol, Gnimpieba, Etienne Z.

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :4497-4499 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning

Authors: Haas, Samuel, Shrestha Gurung, Bichar Dip, Hartman, Timothy W., Do, Tuyen, Gnimpieba, Etienne Z.

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :4503-4505 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets

Authors: Haas, Sam, Hartman, Timothy W., Gurung, Bichar Dip Shrestha, Do, Tuyen, Sani, Rajesh, Gadhamshetty, Venkataramana, Gnimpieba, Etienne

Source: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :3605-3607 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings

Authors: Gurung, Bichar Dip Shrestha, Devadig, Ramesh, Do, Tuyen, Gadhamshetty, Venkataramana, Gnimpieba, Etienne Z.

Source: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :3602-3604 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol

Authors: Singh, Ram Nageena, Gnimpieba, Etienne Z., Sani, Rajesh Kumar

Source: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2022 IEEE International Conference on. :3613-3615 Dec, 2022

Relation: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Microbial Corrosion Prevention by Citrobacter sp. Biofilms

Authors: Sigdel, Pawan, Kandadai, Ananth, Jawaharraj, Kalimuthu, Jasthi, Bharat, Gnimpieba, Etienne, Gadhamshetty, Venkataramana

Subject Terms: Condensed Matter - Materials Science

Access URL: http://arxiv.org/abs/2304.13862

Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research

Authors: Gasper, William, Ma, Jiahao, Ghersi, Dario, Gnimpieba, Etienne Z., Gadhamshetty, Venkataramana, Chundi, Parvathi

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :3570-3577 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Identifying genes involved in biocorrosion from the literature using text-mining

Authors: Thakur, Payal, Rauniyar, Shailabh, Tripathi, Abhilash Kumar, Saxena, Priya, Gopalakrishnan, Vinoj, Singh, Ram Nageena, Olakunle, Mathew A., Gnimpieba, Etienne Z., Sani, Rajesh Kumar

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :3586-3588 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis

Authors: Tripathi, Abhilash Kumar, Saxena, Priya, Thakur, Payal, Rauniyar, Shailabh, Gopalakrishnan, Vinoj, Singh, Ram Nageena, Olakunle, Mathew A., Gnimpieba, Etienne Z., Sani, Rajesh Kumar

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :3589-3591 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20

Authors: Saxena, Priya, Tripathi, Abhilash Kumar, Thakur, Payal, Rauniyar, Shailabh, Gopalakrishnan, Vinoj, Singh, Ram Nageena, Olakunle, Mathew A., Gnimpieba, Etienne Z., Sani, Rajesh Kumar

Source: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2021 IEEE International Conference on. :3583-3585 Dec, 2021

Relation: 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Global challenges and microbial biofilms: Identification of priority questions in biofilm research, innovation and policy

Authors: Coenye, Tom, Ahonen, Merja, Anderson, Skip, Cámara, Miguel, Chundi, Parvathi, Fields, Matthew, Foidl, Ines, Gnimpieba, Etienne Z., Griffin, Kristen, Hinks, Jamie, Loka, Anup R., Lushbough, Carol, MacPhee, Cait, Nater, Natasha, Raval, Rasmita, Slater-Jefferies, Jo, Teo, Pauline, Wilks, Sandra, Yung, Maria, Webb, Jeremy S.

Source: In Biofilm December 2024 8

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities.

Authors: Gnimpieba, Etienne Z¹ (AUTHOR) etienne.gnimpieba@usd.edu, Hartman, Timothy W¹ (AUTHOR), Do, Tuyen¹ (AUTHOR), Zylla, Jessica¹ (AUTHOR), Aryal, Shiva¹ (AUTHOR), Haas, Samuel J¹ (AUTHOR), Agany, Diing D M¹ (AUTHOR), Gurung, Bichar Dip Shrestha¹ (AUTHOR), Doe, Valena² (AUTHOR), Yosufzai, Zelaikha³ (AUTHOR), Pan, Daniel³ (AUTHOR), Campbell, Ross³ (AUTHOR), Huber, Victor C⁴ (AUTHOR), Sani, Rajesh⁵ (AUTHOR), Gadhamshetty, Venkataramana⁵ (AUTHOR), Lushbough, Carol¹ (AUTHOR)

Source: Briefings in Bioinformatics. 2024 Supplement, Vol. 25, p1-8. 8p.

Subject Terms: *PROTEOMICS, *CLOUD storage, *QUORUM sensing, *CLOUD computing, *ESSENTIAL nutrients, *METAGENOMICS

NanoStringBioNet: Integrated R framework for bioscience knowledge discovery from NanoString nCounter data

Authors: Hoffman, Mariah M., Minette, Carrie J., Messerli, Shanta M., Bhardwaj, Ratan D., Gnimpieba, Etienne Z.

Source: 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2017 IEEE International Conference on. :2157-2162 Nov, 2017

Relation: 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)