DNEA: an R package for fast and versatile data-driven network analysis of metabolomics data

Authors: Christopher Patsalis, Gayatri Iyer, Marci Brandenburg, Alla Karnovsky, George Michailidis

Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-19 (2024)

Subject Terms: Network analysis, Pathway analysis, Partial correlation, Metabolomics, Enrichment analysis, Network visualization, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/c46d5f12270a4f8cbce0356028992676

Analysing and visualising mobility vulnerability and recovery across Florida neighbourhoods: a case study of Hurricane Ian

Authors: Jinpeng Wang, Yujie Hu, Li Duan, George Michailidis

Source: Regional Studies, Regional Science, Vol 11, Iss 1, Pp 384-386 (2024)

Subject Terms: Human mobility, mobility networks, spatial networks, mobile phone location data, vulnerability, recovery, Regional economics. Space in economics, HT388, Regional planning, HT390-395

File Description: electronic resource

Relation: https://doaj.org/toc/2168-1376

Access URL: https://doaj.org/article/daa57291f2f84e51a326dee16089312e

Returners and explorers dichotomy in the face of natural hazards

Authors: Zeyu He, Yujie Hu, Leo L. Duan, George Michailidis

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/f0513034183d4be0aa883412ea45d828

Serum lipidomic determinants of human diabetic neuropathy in type 2 diabetes

Authors: Farsad Afshinnia, Evan L. Reynolds, Thekkelnaycke M. Rajendiran, Tanu Soni, Jaeman Byun, Masha G. Savelieff, Helen C. Looker, Robert G. Nelson, George Michailidis, Brian C. Callaghan, Subramaniam Pennathur, Eva L. Feldman

Source: Annals of Clinical and Translational Neurology, Vol 9, Iss 9, Pp 1392-1404 (2022)

Subject Terms: Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571, Neurology. Diseases of the nervous system, RC346-429

File Description: electronic resource

Relation: https://doaj.org/toc/2328-9503

Access URL: https://doaj.org/article/d318044b851d4b8d8d34b931e9b4f96b

Challenges for Anomaly Detection in Large-Scale Cyber-Physical Systems

Authors: George Michailidis

Source: Harvard Data Science Review, Vol 5, Iss 1 (2023)

Subject Terms: Electronic computers. Computer science, QA75.5-76.95

File Description: electronic resource

Relation: https://doaj.org/toc/2644-2353

Access URL: https://doaj.org/article/4b960839aa1142d28a32e72defadfddc

County-level longitudinal clustering of COVID-19 mortality to incidence ratio in the United States

Authors: Nasim Vahabi, Masoud Salehi, Julio D. Duarte, Abolfazl Mollalo, George Michailidis

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-22 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/714dc68c8436436e912b5be6eea3f40b

Unsupervised Multi-Omics Data Integration Methods: A Comprehensive Review

Authors: Nasim Vahabi, George Michailidis

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: multi-omics, unsupervised integration, data-ensemble, model-ensemble, sequential analysis, clustering method, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.854752/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/0f491756aa944488b891e3200e1a9202

Diminished retinal complex lipid synthesis and impaired fatty acid β-oxidation associated with human diabetic retinopathy

Authors: Patrice E. Fort, Thekkelnaycke M. Rajendiran, Tanu Soni, Jaeman Byun, Yang Shan, Helen C. Looker, Robert G. Nelson, Matthias Kretzler, George Michailidis, Jerome E. Roger, Thomas W. Gardner, Steven F. Abcouwer, Subramaniam Pennathur, Farsad Afshinnia

Source: JCI Insight, Vol 6, Iss 19 (2021)

Subject Terms: Ophthalmology, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/dbaa7f52a5e1422898c64c6489cc2f2b

Reliability and Construct Validity of the Greek Gratitude Questionnaire (GQ6) in a sample of children aged 11 to 12 years

Authors: George Michailidis, Aikaterini Maridaki-Kassotaki

Source: Dialogues in Clinical Neuroscience & Mental Health, Vol 3, Iss 1, Pp 56-62 (2020)

Subject Terms: gratitude questionnaire, greek version, reliability, construct validity, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.obrela-journal.gr/index.php/obrela/article/view/176; https://doaj.org/toc/2585-2795

Access URL: https://doaj.org/article/2493bfdcf65645019eeb0b4ed03c206f

A comparative study of topology-based pathway enrichment analysis methods

Authors: Jing Ma, Ali Shojaie, George Michailidis

Source: BMC Bioinformatics, Vol 20, Iss 1, Pp 1-14 (2019)

Subject Terms: Pathway enrichment analysis, Pathway topology, Type I error, Power, Differential network biology, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-019-3146-1; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/b45a3262994f415aac024d4b021849c4

Cox-sMBPLS: An Algorithm for Disease Survival Prediction and Multi-Omics Module Discovery Incorporating Cis-Regulatory Quantitative Effects

Authors: Nasim Vahabi, Caitrin W. McDonough, Ankit A. Desai, Larisa H. Cavallari, Julio D. Duarte, George Michailidis

Source: Frontiers in Genetics, Vol 12 (2021)

Subject Terms: multi-omics, supervised Integration, cis-regulatory quantitative, multi-block PLS, survival analysis, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.701405/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/7600cec8fb8c4048b469ab2e0fb954b7

Shared and distinct lipid-lipid interactions in plasma and affected tissues in a diabetic mouse model

Authors: Kelli M. Sas, Jiahe Lin, Thekkelnaycke M. Rajendiran, Tanu Soni, Viji Nair, Lucy M. Hinder, Hosagrahar V. Jagadish, Thomas W. Gardner, Steven F. Abcouwer, Frank C. Brosius, III, Eva L. Feldman, Matthias Kretzler, George Michailidis, Subramaniam Pennathur

Source: Journal of Lipid Research, Vol 59, Iss 2, Pp 173-183 (2018)

Subject Terms: diabetes, eye, kidney, mass spectrometry, nerve, systems biology, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0022227520342231; https://doaj.org/toc/0022-2275

Access URL: https://doaj.org/article/ba85df96d23e4dfc9895cf6bfd30b5d5

Lipid Alterations in African American Men with Prostate Cancer

Authors: Anindita Ravindran, Danthasinghe Waduge Badrajee Piyarathna, Jie Gohlke, Vasanta Putluri, Tanu Soni, Stacy Lloyd, Patricia Castro, Subramaniam Pennathur, Jeffrey A. Jones, Michael Ittmann, Nagireddy Putluri, George Michailidis, Thekkelnaycke M. Rajendiran, Arun Sreekumar

Source: Metabolites, Vol 12, Iss 1, p 8 (2021)

Subject Terms: lipidomics, prostate cancer health disparity, biochemical recurrence, cholesteryl esters, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-1989/12/1/8; https://doaj.org/toc/2218-1989

Access URL: https://doaj.org/article/d4b748a2eb2141c9a7c51357cc6c18e7

Lipidomic Signature of Progression of Chronic Kidney Disease in the Chronic Renal Insufficiency Cohort

Authors: Farsad Afshinnia, Thekkelnaycke M. Rajendiran, Alla Karnovsky, Tanu Soni, Xue Wang, Dawei Xie, Wei Yang, Tariq Shafi, Matthew R. Weir, Jiang He, Carolyn S. Brecklin, Eugene P. Rhee, Jeffrey R. Schelling, Akinlolu Ojo, Harold Feldman, George Michailidis, Subramaniam Pennathur, Lawrence J. Appel, Alan S. Go, John W. Kusek, James P. Lash, Raymond R. Townsend

Source: Kidney International Reports, Vol 1, Iss 4, Pp 256-268 (2016)

Subject Terms: chronic kidney disease, lipids, proteinuria, Diseases of the genitourinary system. Urology, RC870-923

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2468024916300596; https://doaj.org/toc/2468-0249

Access URL: https://doaj.org/article/4a8f3a0aac714db3adde2e9053e8e68c

Inhibition of the hexosamine biosynthetic pathway promotes castration-resistant prostate cancer

Authors: Akash K. Kaushik, Ali Shojaie, Katrin Panzitt, Rajni Sonavane, Harene Venghatakrishnan, Mohan Manikkam, Alexander Zaslavsky, Vasanta Putluri, Vihas T. Vasu, Yiqing Zhang, Ayesha S. Khan, Stacy Lloyd, Adam T. Szafran, Subhamoy Dasgupta, David A. Bader, Fabio Stossi, Hangwen Li, Susmita Samanta, Xuhong Cao, Efrosini Tsouko, Shixia Huang, Daniel E. Frigo, Lawrence Chan, Dean P. Edwards, Benny A. Kaipparettu, Nicholas Mitsiades, Nancy L. Weigel, Michael Mancini, Sean E. McGuire, Rohit Mehra, Michael M. Ittmann, Arul M. Chinnaiyan, Nagireddy Putluri, Ganesh S. Palapattu, George Michailidis, Arun Sreekumar

Source: Nature Communications, Vol 7, Iss 1, Pp 1-12 (2016)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/928bd0a4d45444ac89e49f796339b9e4

Application of Differential Network Enrichment Analysis for Deciphering Metabolic Alterations

Authors: Gayatri R. Iyer, Janis Wigginton, William Duren, Jennifer L. LaBarre, Marci Brandenburg, Charles Burant, George Michailidis, Alla Karnovsky

Source: Metabolites, Vol 10, Iss 12, p 479 (2020)

Subject Terms: partial correlation networks, differential networks, enrichment analysis, metabolic disorders, metabolomics and lipidomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-1989/10/12/479; https://doaj.org/toc/2218-1989

Access URL: https://doaj.org/article/5c3d8939e6fc417cb1729c6818e544e1

On the formation of Dodd-Frank Act derivatives regulations.

Authors: Shawn Mankad, George Michailidis, Andrei Kirilenko

Source: PLoS ONE, Vol 14, Iss 3, p e0213730 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/1b3b87206d154d25879036d6ce67c6ab

Threshold Value Estimation Using Adaptive Two-Stage Plans in R

Authors: Shawn Mankad, George Michailidis, Moulinath Banerjee

Source: Journal of Statistical Software, Vol 67, Iss 1, Pp 1-19 (2015)

Subject Terms: threshold estimation, two-stage estimation, R, Statistics, HA1-4737

File Description: electronic resource

Relation: https://www.jstatsoft.org/index.php/jss/article/view/2376; https://doaj.org/toc/1548-7660

Access URL: https://doaj.org/article/c0d9226ad965410caca2d9318f4b445a

Variable selection in omics data: A practical evaluation of small sample sizes.

Authors: Alexander Kirpich, Elizabeth A Ainsworth, Jessica M Wedow, Jeremy R B Newman, George Michailidis, Lauren M McIntyre

Source: PLoS ONE, Vol 13, Iss 6, p e0197910 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0197910&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/cd3e0f697836411cb9dbdd7408ebfb48

Pathway-Centric Integrative Analysis Identifies RRM2 as a Prognostic Marker in Breast Cancer Associated with Poor Survival and Tamoxifen Resistance

Authors: Nagireddy Putluri, Suman Maity, Ramakrishna Kommagani, Chad J. Creighton, Vasanta Putluri, Fengju Chen, Sarmishta Nanda, Salil Kumar Bhowmik, Atsushi Terunuma, Tiffany Dorsey, Agostina Nardone, Xiaoyong Fu, Chad Shaw, Tapasree Roy Sarkar, Rachel Schiff, John P. Lydon, Bert W. O’Malley, Stefan Ambs, Gokul M. Das, George Michailidis, Arun Sreekumar

Source: Neoplasia: An International Journal for Oncology Research, Vol 16, Iss 5, Pp 390-402 (2014)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S147655861400061X; https://doaj.org/toc/1476-5586

Access URL: https://doaj.org/article/73ffcf9c2f0a43e69ef35d2b0b955497