GrandQC: A comprehensive solution to quality control problem in digital pathology

Authors: Zhilong Weng, Alexander Seper, Alexey Pryalukhin, Fabian Mairinger, Claudia Wickenhauser, Marcus Bauer, Lennert Glamann, Hendrik Bläker, Thomas Lingscheidt, Wolfgang Hulla, Danny Jonigk, Simon Schallenberg, Andrey Bychkov, Junya Fukuoka, Martin Braun, Birgid Schömig-Markiefka, Sebastian Klein, Andreas Thiel, Katarzyna Bozek, George J. Netto, Alexander Quaas, Reinhard Büttner, Yuri Tolkach

Source: Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/da6c09a594ea4edbb78b12d1f24e1a85

UALCAN: An update to the integrated cancer data analysis platform

Authors: Darshan Shimoga Chandrashekar, Santhosh Kumar Karthikeyan, Praveen Kumar Korla, Henalben Patel, Ahmedur Rahman Shovon, Mohammad Athar, George J. Netto, Zhaohui S. Qin, Sidharth Kumar, Upender Manne, Chad J. Crieghton, Sooryanarayana Varambally

Source: Neoplasia: An International Journal for Oncology Research, Vol 25, Iss , Pp 18-27 (2022)

Subject Terms: UALCAN, Cancer gene expression, Bioinformatics, Transcriptomics, Patient survival, lncRNA, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S147655862200001X; https://doaj.org/toc/1476-5586

Access URL: https://doaj.org/article/1a9e0242ef414e7eaa55cb8ccec24f42

ARID1A-deficient bladder cancer is dependent on PI3K signaling and sensitive to EZH2 and PI3K inhibitors

Authors: Hasibur Rehman, Darshan S. Chandrashekar, Chakravarthi Balabhadrapatruni, Saroj Nepal, Sai Akshaya Hodigere Balasubramanya, Abigail K. Shelton, Kasey R. Skinner, Ai-Hong Ma, Ting Rao, Sumit Agarwal, Marie-Lisa Eich, Alyncia D. Robinson, Gurudatta Naik, Upender Manne, George J. Netto, C. Ryan Miller, Chong-xian Pan, Guru Sonpavde, Sooryanarayana Varambally, James E. Ferguson III

Source: JCI Insight, Vol 7, Iss 16 (2022)

Subject Terms: Oncology, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/8e79799b8d1942819fca44a09858150e

Comparison of three validated PD-L1 immunohistochemical assays in urothelial carcinoma of the bladder: interchangeability and issues related to patient selection

Authors: Enrico Munari, Giulia Querzoli, Matteo Brunelli, Marcella Marconi, Marco Sommaggio, Marco A. Cocchi, Guido Martignoni, George J. Netto, Anna Caliò, Linda Quatrini, Francesca R. Mariotti, Claudio Luchini, Ilaria Girolami, Albino Eccher, Diego Segala, Francesco Ciompi, Giuseppe Zamboni, Lorenzo Moretta, Giuseppe Bogina

Source: Frontiers in Immunology, Vol 13 (2022)

Subject Terms: PD-L1, immunohistochemistry, assays, comparison, urothelial, bladder, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2022.954910/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/00d6198449924517bf4712476032448f

Expression and Role of Methylenetetrahydrofolate Dehydrogenase 1 Like (MTHFD1L) in Bladder Cancer

Authors: Marie-Lisa Eich, Maria Del Carmen Rodriguez Pena, Darshan Shimoga Chandrashekar, Alcides Chaux, Sumit Agarwal, Jennifer B. Gordetsky, James E. Ferguson, Guru P. Sonpavde, George J. Netto, Sooryanarayana Varambally

Source: Translational Oncology, Vol 12, Iss 11, Pp 1416-1424 (2019)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1936523319302219; https://doaj.org/toc/1936-5233

Access URL: https://doaj.org/article/b393174b479b45e794681d6ef1c8f1fc

Clinical Application of TERT Promoter Mutations in Urothelial Carcinoma

Authors: Yujiro Hayashi, Kazutoshi Fujita, George J. Netto, Norio Nonomura

Source: Frontiers in Oncology, Vol 11 (2021)

Subject Terms: TERT promoter, telomere, urothelial carcinoma, bladder cancer, upper tract urothelial carcinoma, tumorigenesis, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2021.705440/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/5dda4ab842f043cd90ef4d434873c949

Impact of PD-L1 and PD-1 Expression on the Prognostic Significance of CD8+ Tumor-Infiltrating Lymphocytes in Non-Small Cell Lung Cancer

Authors: Enrico Munari, Marcella Marconi, Giulia Querzoli, Gianluigi Lunardi, Pietro Bertoglio, Francesco Ciompi, Alice Tosadori, Albino Eccher, Nicola Tumino, Linda Quatrini, Paola Vacca, Giulio Rossi, Alberto Cavazza, Guido Martignoni, Matteo Brunelli, George J. Netto, Lorenzo Moretta, Giuseppe Zamboni, Giuseppe Bogina

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: PD-L1, PD-1, lung cancer, immunoscore, CD8, TILs, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.680973/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/38fce130e5484fd6927b40f8831e269c

Clinical Significance of Hotspot Mutation Analysis of Urinary Cell-Free DNA in Urothelial Bladder Cancer

Authors: Yujiro Hayashi, Kazutoshi Fujita, Kyosuke Matsuzaki, Marie-Lisa Eich, Eisuke Tomiyama, Makoto Matsushita, Yoko Koh, Kosuke Nakano, Cong Wang, Yu Ishizuya, Taigo Kato, Koji Hatano, Atsunari Kawashima, Takeshi Ujike, Motohide Uemura, Ryoichi Imamura, George J. Netto, Norio Nonomura

Source: Frontiers in Oncology, Vol 10 (2020)

Subject Terms: bladder cancer, TERT promoter, FGFR3, cell-free DNA, liquid biopsy, UroVysion, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fonc.2020.00755/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/1dccd974f7014f8996888db2fa8234bf

A Role for De Novo Purine Metabolic Enzyme PAICS in Bladder Cancer Progression

Authors: Balabhadrapatruni V.S.K. Chakravarthi, Maria Del Carmen Rodriguez Pena, Sumit Agarwal, Darshan S. Chandrashekar, Sai Akshaya Hodigere Balasubramanya, Fayez J. Jabboure, Andres Matoso, Trinity J. Bivalacqua, Katayoon Rezaei, Alcides Chaux, William E. Grizzle, Guru Sonpavde, Jennifer Gordetsky, George J. Netto, Sooryanarayana Varambally

Source: Neoplasia: An International Journal for Oncology Research, Vol 20, Iss 9, Pp 894-904 (2018)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1476558618301842; https://doaj.org/toc/1476-5586

Access URL: https://doaj.org/article/cd4b584fb32843918638b0684eaee565

AIM1 is an actin-binding protein that suppresses cell migration and micrometastatic dissemination

Authors: Michael C. Haffner, David M. Esopi, Alcides Chaux, Meltem Gürel, Susmita Ghosh, Ajay M. Vaghasia, Harrison Tsai, Kunhwa Kim, Nicole Castagna, Hong Lam, Jessica Hicks, Nicolas Wyhs, Debika Biswal Shinohara, Paula J. Hurley, Brian W. Simons, Edward M. Schaeffer, Tamara L. Lotan, William B. Isaacs, George J. Netto, Angelo M. De Marzo, William G. Nelson, Steven S. An, Srinivasan Yegnasubramanian

Source: Nature Communications, Vol 8, Iss 1, Pp 1-17 (2017)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/41b0a231505343d098eefebb391e055f

Lymph node density predicts recurrence and death after inguinal lymph node dissection for penile cancer

Authors: Mark W. Ball, Zeyad R. Schwen, Joan S. Ko, Alexa Meyer, George J. Netto, Arthur L. Burnett, Trinity J. Bivalacqua

Source: Investigative and Clinical Urology, Vol 58, Iss 1, Pp 20-26 (2017)

Subject Terms: Lymph node excision, Neoplasm staging, Penile neoplasms, Survival analysis, Diseases of the genitourinary system. Urology, RC870-923

File Description: electronic resource

Relation: https://www.icurology.org/Synapse/Data/PDFData/2020ICU/icu-58-20.pdf; https://doaj.org/toc/2466-0493; https://doaj.org/toc/2466-054X

Access URL: https://doaj.org/article/6e2df5b5aab84885aa1135945d0d9371

Cadaveric Orthotopic Auxiliary Split Liver Transplantation and Kidney Transplantation: An Alternative for Type 1 Primary Hyperoxaluria.

Authors: Nicholas Onaca, Edmund Q Sanchez, Larry B Melton, George J Netto, Karl A Glastad, Patriciu A Martin, Takehisa Ueno, Marlon F Levy, Robert M Goldstein, Goran B Klintmalm

Source: Transplantation; Aug2005, Vol. 80 Issue 3, p421-424, 4p

The changing clinical presentation of recurrent primary biliary cirrhosis after liver transplantation.

Authors: Edmund Q. Sanchez, Marlon F. Levy, Robert M. Goldstein, Carlos G. Fasola, Glenn W. Tillery, George J. Netto, David L. Watkins, Jeffrey S. Weinstein, Natalie G. Murray, Derek Byers, Laura L. Christensen, Goran B. Klintmalm

Source: Transplantation; 12/15/2003, Vol. 76 Issue 11, p1583-1588, 6p

Meta-analysis of the robustness of COVID-19 diagnostic kit performance during the early pandemic

Authors: George J Netto, Chandrakumar Shanmugam, Michael Behring, Vishwas Luthra, Sixto M Leal, Sooryanarayana Varambally, Upender Manne

Source: BMJ Open, Vol 12, Iss 4 (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://bmjopen.bmj.com/content/12/4/e053912.full; https://doaj.org/toc/2044-6055

Access URL: https://doaj.org/article/823a7200410f41fcb7169bf1a22fd208

ATF2 promotes urothelial cancer outgrowth via cooperation with androgen receptor signaling

Authors: Satoshi Inoue, Taichi Mizushima, Hiroki Ide, Guiyang Jiang, Takuro Goto, Yujiro Nagata, George J Netto, Hiroshi Miyamoto

Source: Endocrine Connections, Vol 7, Iss 12, Pp 1397-1408 (2018)

Subject Terms: androgen receptor, ATF2, ERK, neoplastic transformation, prognosticator, tumor progression, urothelial cancer, Diseases of the endocrine glands. Clinical endocrinology, RC648-665

File Description: electronic resource

Relation: https://ec.bioscientifica.com/view/journals/ec/7/12/EC-18-0364.xml; https://doaj.org/toc/2049-3614

Access URL: https://doaj.org/article/cecb66f276b44ab0a051ad6c0c21e96a

Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

Authors: Simeon U Springer, Chung-Hsin Chen, Maria Del Carmen Rodriguez Pena, Lu Li, Christopher Douville, Yuxuan Wang, Joshua David Cohen, Diana Taheri, Natalie Silliman, Joy Schaefer, Janine Ptak, Lisa Dobbyn, Maria Papoli, Isaac Kinde, Bahman Afsari, Aline C Tregnago, Stephania M Bezerra, Christopher VandenBussche, Kazutoshi Fujita, Dilek Ertoy, Isabela W Cunha, Lijia Yu, Trinity J Bivalacqua, Arthur P Grollman, Luis A Diaz, Rachel Karchin, Ludmila Danilova, Chao-Yuan Huang, Chia-Tung Shun, Robert J Turesky, Byeong Hwa Yun, Thomas A Rosenquist, Yeong-Shiau Pu, Ralph H Hruban, Cristian Tomasetti, Nickolas Papadopoulos, Ken W Kinzler, Bert Vogelstein, Kathleen G Dickman, George J Netto

Source: eLife, Vol 7 (2018)

Subject Terms: Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/43237; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/2a64088993e947c28fb98bda8c6de228

Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy

Authors: Simeon U Springer, Chung-Hsin Chen, Maria Del Carmen Rodriguez Pena, Lu Li, Christopher Douville, Yuxuan Wang, Joshua David Cohen, Diana Taheri, Natalie Silliman, Joy Schaefer, Janine Ptak, Lisa Dobbyn, Maria Papoli, Isaac Kinde, Bahman Afsari, Aline C Tregnago, Stephania M Bezerra, Christopher VandenBussche, Kazutoshi Fujita, Dilek Ertoy, Isabela W Cunha, Lijia Yu, Trinity J Bivalacqua, Arthur P Grollman, Luis A Diaz, Rachel Karchin, Ludmila Danilova, Chao-Yuan Huang, Chia-Tung Shun, Robert J Turesky, Byeong Hwa Yun, Thomas A Rosenquist, Yeong-Shiau Pu, Ralph H Hruban, Cristian Tomasetti, Nickolas Papadopoulos, Ken W Kinzler, Bert Vogelstein, Kathleen G Dickman, George J Netto

Source: eLife, Vol 7 (2018)

Subject Terms: liquid biopsy, cancer, urine, bladder, renal pelvis, ureter, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/32143; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/035e9fc0aa4749039ab3ee51913706ab

Clinical Validation of the 2005 ISUP Gleason Grading System in a Cohort of Intermediate and High Risk Men Undergoing Radical Prostatectomy.

Authors: Sheila F Faraj, Stephania M Bezerra, Kasra Yousefi, Helen Fedor, Stephanie Glavaris, Misop Han, Alan W Partin, Elizabeth Humphreys, Jeffrey Tosoian, Michael H Johnson, Elai Davicioni, Bruce J Trock, Edward M Schaeffer, Ashley E Ross, George J Netto

Source: PLoS ONE, Vol 11, Iss 1, p e0146189 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4712132?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/0cd410d6a9be422b8d79e702c394ca8c

Global 5-Hydroxymethylcytosine Levels Are Profoundly Reduced in Multiple Genitourinary Malignancies.

Authors: Enrico Munari, Alcides Chaux, Ajay M Vaghasia, Diana Taheri, Sarah Karram, Stephania M Bezerra, Nilda Gonzalez Roibon, William G Nelson, Srinivasan Yegnasubramanian, George J Netto, Michael C Haffner

Source: PLoS ONE, Vol 11, Iss 1, p e0146302 (2016)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4718593?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/03aacf1a6c2c42a89079b9fe901d1a27