Transcriptomic and Multi-Scale Network Analyses Reveal Key Drivers of Cardiovascular Disease

Authors: Tumenbayar, B., Pham, K., Biber, J.C., Drewes, R., Bae, Y.

Source: IEEE Transactions on Molecular, Biological, and Multi-Scale Communications IEEE Trans. Mol. Biol. Multi-Scale Commun. Molecular, Biological, and Multi-Scale Communications, IEEE Transactions on. 11(1):78-90 Mar, 2025

Trends and Prospects in Pig Genomics and Genetics

Contributors: Piórkowska, Katarzyna, Ropka-Molik, Katarzyna

Subject Terms: SESN3, SMAD3, ssc-miR-124-3p, pig, adipogenesis, Iberian, additive, dominance, genetic correlation, crossbreeding, genomic selection, BCL2L2-PABPN1, chimeric RNA, cis-SAGe, genome-wide analysis, RNA-Seq, cardiomyocyte structure, cytoskeleton organization, extracellular matrix, cell culture, transcriptomic analysis, CREB, alternative splicing variants, function, RNA-seq, fibrinogen-like 1, FGL1, fat deposition, selective markers, corpus luteum number, number of stillborn, gene ontology, genomic regions, gene network, pCADD, protein–protein interaction, wild boar, species identification, genetic markers, genetic methods, primary adipocyte cells, adipose tissue, lncRNA-AS, Sus scrofa, STR, genetic differentiation, adipocytes, ddPCR, ECmiRNAs, mesenchymal stem cells, cardiomyocytes, porcine cardiac muscle, long-term in vitro cell culture, stemness markers, Nero Lucano pig, Southern Italy, inbreeding coefficient (FROH), runs of homozygosity (ROH) islands, umbilical hernia, inguinal hernia, DNA methylation, transcript level, Research and information: general, Biology, life sciences, Technology, Engineering, Agriculture, Industrial processes

File Description: application/octet-stream

Access URL: https://directory.doabooks.org/handle/20.500.12854/153155
https://mdpi.com/books/pdfview/book/10433

Genome-wide identification and analysis of the WRKY gene family in Sainfoin (Onobrychis viciifolia) and their response to drought, salt, and alkali stress

Authors: Wenxiang Li, Yinuo Yan, Yanxia Liang, Shiyao Yue, Yaling Liu, Feng Yuan, Mengrong Xu, Dengxia Yi, Jun Li, Yan Zhao, Lili Nan, Wenbo Jiang

Source: BMC Genomics, Vol 26, Iss 1, Pp 1-17 (2025)

Subject Terms: Sainfoin, WRKY family, Drought, Salt, Alkali, Genome-wide analysis, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/7a1734cc2d944774a33fed39fc7260bf

Genome-wide characterization and expression profiling of FIMBRIN gene family members in response to abiotic stress in Medicago sativa

Authors: Juan Wang, Xinru Su, Zhicheng Jia, Wenxin Peng, Liru Dou, Peisheng Mao

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-16 (2025)

Subject Terms: Medicago sativa, Fimbrin gene family, Abiotic stress, Genome-wide analysis, Expression patterns, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/8c72431a2884481b9d1b73f2329d20f1

Genome-wide identification and gene expression pattern analysis of the carotenoid cleavage oxygenase gene family in Fagopyrum tataricum

Authors: Huan Li, Xin Yao, Ailing He, Guoxing Xue, Haizhu Yang, Yu Fan, Sanwei Yang, Jingjun Ruan

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-19 (2025)

Subject Terms: Fagopyrum tataricum, CCO gene family, Genome-wide analysis, Evolution analysis, Expression patterns, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/710729aae7fa421e8fd13c7995b224c3

Genome-wide analysis of the NF-Y gene family in non-heading Chinese cabbage and the involvement of BcNF-YA8 in ABA-mediated flowering regulation

Authors: Yan Li, Yu Tao, Aimei Bai, Haibin Wang, Zhanghong Yu, Tongkun Liu, Xilin Hou, Ying Li

Source: Horticultural Plant Journal, Vol 11, Iss 2, Pp 661-679 (2025)

Subject Terms: Non-heading Chinese cabbage, Nuclear factor Y, Genome-wide analysis, ABA, Flower, Plant culture, SB1-1110

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2468014124000906; https://doaj.org/toc/2468-0141

Access URL: https://doaj.org/article/c55069350c6d4b80b00976a606136fdf

Preserving Privacy for Distributed Genome-Wide Analysis Against Identity Tracing Attacks

Authors: Zhang, Y., Bai, G., Li, X., Nepal, S., Grobler, M., Chen, C., Ko, R.K.L.

Source: IEEE Transactions on Dependable and Secure Computing IEEE Trans. Dependable and Secure Comput. Dependable and Secure Computing, IEEE Transactions on. 20(4):3341-3357 Aug, 2023

Genome-wide identification and expression profiling of WRKY gene family in grain Amaranth (Amaranthus hypochondriacus L.) under salinity and drought stresses

Authors: Akshay Singh, Avantika Maurya, Rajat Gupta, Parampara Joshi, S. Rajkumar, Amit Kumar Singh, Rakesh Bhardwaj, G. P. Singh, Rakesh Singh

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-23 (2025)

Subject Terms: Amaranthus hypochondriacus, WRKY gene family, Genome-wide analysis, Expression profile, Abiotic stresses, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/138c357463f8484c8b2b2ad8568db8b0

Genome-wide identification, characterization, and expression analysis of BZR transcription factor family in Gerbera hybrida

Authors: Qishan Luo, Gan Huang, Xiaohui Lin, Xiaojing Wang, Yaqin Wang

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-17 (2025)

Subject Terms: BZR transcription factor, Expression pattern, Genome-wide analysis, Petal growth, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/50458ff17c1d4a7ca7463122fd863925

Genome-wide identification and expression analysis of ZF-HD family in sunflower (Helianthus annuus L.) under drought and salt stresses

Authors: Kangping Zhang, Ruqian Yan, Xiaoqing Feng, Jingjing Zhang, Yuanyuan Jiang, Lin Li, Jianzhong Guo, Xianping Zhang

Source: BMC Plant Biology, Vol 25, Iss 1, Pp 1-15 (2025)

Subject Terms: Helianthus annuus, ZF-HD gene family, Genome-wide analysis, Abiotic stress, Expression patterns, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/79f800b887c6447aa37a9c76e28113f2

Multifacets in silico study of Plant Defensin 1.1 protein (PDF1.1) in Brassica rapa (turnip)

Authors: Qudsia Naz, Muhammad Farhan Sarwar, Mudassar Fareed Awan, Sajed Ali, Irfan Mughal, Yousuf Shafiq, Irfan Ahmad

Source: FACETS, Vol 10, Iss , Pp 1-16 (2025)

Subject Terms: Brassica rapa, gene ontology, genome-wide analysis, in silico annotation, KEGG analysis, plant defensin proteins (PDFs), Education, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2371-1671

Access URL: https://doaj.org/article/4fd8348cc19b4fbc817f07ec7f8dda94

Genome-wide analysis and identification of nuclear factor Y gene family in switchgrass (Panicum virgatum L.)

Authors: Hadia Hussain, Noor Fatima, Muhammad Sajid, Iqra Mehar, Maryam Noor, Kotb A. Attia, Yaser M. Hafez, Khaled Abdelaal, Tawaf Ali Shah

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-15 (2024)

Subject Terms: Switchgrass, NF-Y gene family, Expression analysis, Genome-wide analysis, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/9c42562b7d984b06bbfe9f5c43e56742

Genome-wide identification and gene expression pattern analysis of the glycoside hydrolase family 1 in Fagopyrum tataricum

Authors: Haizhu Yang, Xin Yao, Weijiao Wu, Ailing He, Chao Ma, Sanwei Yang, Jingjun Ruan

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-23 (2024)

Subject Terms: Fagopyrum tataricum, BGLU gene family, Genome-wide analysis, Evolutionary relationships, Expression patterns, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/2de3d4fdbf8542b38e89c4a9e1ef8c52

The GRAS gene family and its roles in pineapple (Ananas comosus L.) developmental regulation and cold tolerance

Authors: Jinting Lin, Jiahao Wu, Dan Zhang, Xinkai Cai, Lumiao Du, Lin Lu, Chaojia Liu, Shengzhen Chen, Qinglong Yao, Shiyu Xie, Xiaowen Xu, Xiaomei Wang, Ruoyu Liu, Yuan Qin, Ping Zheng

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-19 (2024)

Subject Terms: Pineapple, GRAS transcription factor, Gene expression, Genome-wide analysis, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/e2cef0a0a4b84d1cb874ce0cc93173e0

Genome-wide identification and characterization of Calcium-Dependent Protein Kinase (CDPK) gene family in autotetraploid cultivated alfalfa (Medicago sativa subsp. sativa) and expression analysis under abiotic stresses

Authors: Bingcheng Han, Xueming Dong, Congcong Shi, Zhaoming Wang, Jiwei Chen, Pengzhen Li, Wei Yan, Qiang Zhou, Zhipeng Liu, Longfeng Yan

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-20 (2024)

Subject Terms: Medicago sativa subsp. sativa, MsCDPK gene family, Genome-wide analysis, Tissue-specific expression, Abiotic stress response, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/c5e0482db5004fd2b8fb3d6c206594a9

ZF-HD gene family in rapeseed (Brassica napus L.): genome-wide identification, phylogeny, evolutionary expansion and expression analyses

Authors: Xinrui Xu, Hui Zhou, Qiaohui Yang, Yuyao Yang, Xiaobin Pu

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-17 (2024)

Subject Terms: Brassica napus, ZF-HD gene family, Evolutionary relationship, Genome-wide analysis, Abiotic stress, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/655f071cdbd74b1eab12d3cab3fb2e95

Genomic analysis, evolution and characterization of the heat shock protein-70 gene family in foxtail millet [Setaria italica (L.) P.Beauv.] along with expression analysis under saline conditions

Authors: Jawad Ali, Ali Raza, Muhammad Aakif Khan, Aqib Zeb, Maliha Ghaffar, Maqsood Ahmed Khaskheli

Source: International Journal of Applied and Experimental Biology (2025)

Subject Terms: gene structure, genome-wide analysis, heat shock proteins, hsp70 gene, stress tolerance, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://submissions.eminentscientists.com/index.php/IJAEB/article/view/156; https://doaj.org/toc/2790-6523; https://doaj.org/toc/2790-6531

Access URL: https://doaj.org/article/93f6c08b1e4841ac8701803341da4a92

GRAS transcription factor- Genome-wide identification, characterization and expression analysis in Avena sativa L. under salinity stress

Authors: Muskan Bokolia, Nibha TV, Jangala Chandini Priya, Baljinder Singh

Source: Plant Stress, Vol 15, Iss , Pp 100739- (2025)

Subject Terms: Avena sativa, Transcription factor, GRAS, Expression analysis, Phylogeny, Genome-wide analysis, Plant ecology, QK900-989

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2667064X25000041; https://doaj.org/toc/2667-064X

Access URL: https://doaj.org/article/8789acfa0f03420dac4781738f665452

Genome-wide identification and characterization of the LRX gene family in grapevine (Vitis vinifera L.) and functional characterization of VvLRX7 in plant salt response

Authors: Kai Liu, Xiujie Li, Chaoping Wang, Yan Han, Ziguo Zhu, Bo Li

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-14 (2024)

Subject Terms: Genome-wide analysis, Leucine-rich repeat extensins, Grapevine, Gene expression, Gene function, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/ecb1bc13ce374735af14b044e8428b79

Genome-wide identification and expression analysis of the WRKY gene family reveal essential roles in abiotic stress responses and polysaccharides and flavonoids biosynthesis in Platostoma palustre (Blume) A. J. Paton

Authors: Zhining Chen, Meihua Xu, Changqian Quan, Shu Lin, Jingchun Li, Fan Wei, Danfeng Tang

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-19 (2024)

Subject Terms: Platostoma palustre (Blume) A. J. Paton, WRKY gene family, Genome-wide analysis, Abiotic stress response, Tissue-specific expression, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/21661d92107d4635bbc76875252ed091